mRNA_P-lacustris_contig927.15692.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig927.15692.1
Unique NamemRNA_P-lacustris_contig927.15692.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.410e-19
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 MTLPTYIQGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLL 141
            +TLPTYIQG+Y EAEPLY RATEIWE++LGPEHPLVATALNNRAGLL
Sbjct:  650 VTLPTYIQGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLL 696
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.460e-14
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 TLPTYI----QGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLLS 144
            TL TY+    QGK+ EAEPLY RATEIWE +LGPEHP +ATALNNRAGLLS
Sbjct:  725 TLLTYLPFTSQGKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLS 775
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.480e-14
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 MTLPTYIQGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLL 141
            MTLPT++QG+Y E EP Y RAT IWEK+LGP HP VATALNNRA LL
Sbjct:  595 MTLPTFVQGEYAEGEPQYARATYIWEKALGPAHPQVATALNNRALLL 641
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: A0A6H5KN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN14_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.790e-13
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   25 GKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLL 141
            GK+ EAEPLY RATEIWE +LGPEHP VATALNNRAGLL
Sbjct:    2 GKFAEAEPLYRRATEIWETALGPEHPHVATALNNRAGLL 40
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.240e-10
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   13 TYIQGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLL 141
            T  QGKY EAEPLY R   I+E +LGPEHP VATALNNRAGLL
Sbjct:   27 TVSQGKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLL 69
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 59.7 bits (143), Expect = 5.140e-10
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 QGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGL 138
            QGKYEEAEPLY RA +I E  LGP+HP VAT LNN AGL
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.160e-9
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   22 QGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRA 132
            QGKY+E +PLY RA EI EK+LGP+HP +AT+LNNRA
Sbjct:   50 QGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRA 86
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.630e-9
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   19 IQGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLL 141
            + GKY EA+PLY RA EI E +LGP+HP +AT LNNRAGLL
Sbjct:  611 LMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLL 651
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 6.680e-9
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   19 IQGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLL 141
            IQGKY EAEPLY R+  I EK LGPEHP VAT+L+NRA LL
Sbjct:  692 IQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
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BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.500e-9
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 TYIQGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRA 132
            T  QGKYEEA+PLY RA EI EK+LGP+HP +A  LNN+A
Sbjct:    4 TVFQGKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKA 43
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig927.15692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU94_9PHAE3.410e-1987.23NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE3.460e-1474.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D0_9PHAE3.480e-1474.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN14_9PHAE4.790e-1384.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE2.240e-1074.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295285.140e-1074.36tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
D8LPW2_ECTSI2.160e-970.27TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6W2_ECTSI2.630e-968.29NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G722_ECTSI6.680e-973.17NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5K0C4_9PHAE7.500e-967.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig927contigP-lacustris_contig927:29048..29368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog2880.D7FGQ1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.1630769-CDS-P-lacustris_contig927:29047..292031622817355.1630769-CDS-P-lacustris_contig927:29047..29203Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig927 29048..29203 +
1693495000.9696314-CDS-P-lacustris_contig927:29047..292031693495000.9696314-CDS-P-lacustris_contig927:29047..29203Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig927 29048..29203 +
1622817355.176645-CDS-P-lacustris_contig927:29272..293681622817355.176645-CDS-P-lacustris_contig927:29272..29368Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig927 29273..29368 +
1693495000.9829535-CDS-P-lacustris_contig927:29272..293681693495000.9829535-CDS-P-lacustris_contig927:29272..29368Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig927 29273..29368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig927.15692.1prot_P-lacustris_contig927.15692.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig927 29048..29368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig927.15692.1

>prot_P-lacustris_contig927.15692.1 ID=prot_P-lacustris_contig927.15692.1|Name=mRNA_P-lacustris_contig927.15692.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=84bp
MTLPTYIQGKYEEAEPLYTRATEIWEKSLGPEHPLVATALNNRAGLLSIG
SSYEEAEPLYKRTQEIFEKSLGRDHPNVATILNN
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mRNA from alignment at P-lacustris_contig927:29048..29368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig927.15692.1 ID=mRNA_P-lacustris_contig927.15692.1|Name=mRNA_P-lacustris_contig927.15692.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=321bp|location=Sequence derived from alignment at P-lacustris_contig927:29048..29368+ (Pleurocladia lacustris SAG_25_93)
ATGACGCTGCCCACCTACATCCAGGGCAAGTACGAGGAAGCTGAGCCTCT
ATATACGCGGGCCACTGAGATTTGGGAGAAGTCTTTGGGTCCTGAGCACC
CATTGGTGGCAACGGCGCTCAACAACCGGGCGGGGTTGTTGAGCATTGGT
TCTTCCGTCCATTTCCTCTGCACATTTAGCTTCACCAAATTAACTTTGCT
CTTGCCCGGCACATTACAGGGCAAGTATGAAGAAGCCGAGCCTCTGTACA
AGAGAACGCAGGAGATCTTTGAGAAATCCTTGGGGCGGGATCATCCCAAC
GTTGCAACAATTCTCAACAAC
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Coding sequence (CDS) from alignment at P-lacustris_contig927:29048..29368+

>mRNA_P-lacustris_contig927.15692.1 ID=mRNA_P-lacustris_contig927.15692.1|Name=mRNA_P-lacustris_contig927.15692.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=504bp|location=Sequence derived from alignment at P-lacustris_contig927:29048..29368+ (Pleurocladia lacustris SAG_25_93)
ATGACGCTGCCCACCTACATCCAGGGCAAGTACGAGGAAGCTGAGCCTCT
ATATACGCGGGCCACTGAGATTTGGGAGAAGTCTTTGGGTCCTGAGCACC
CATTGGTGGCAACGGCGCTCAACAACCGGGCGGGGTTGTTGAGCATTGGT
TCTTCCATGACGCTGCCCACCTACATCCAGGGCAAGTACGAGGAAGCTGA
GCCTCTATATACGCGGGCCACTGAGATTTGGGAGAAGTCTTTGGGTCCTG
AGCACCCATTGGTGGCAACGGCGCTCAACAACCGGGCGGGGTTGTTGAGC
ATTGGTTCTTCCTATGAAGAAGCCGAGCCTCTGTACAAGAGAACGCAGGA
GATCTTTGAGAAATCCTTGGGGCGGGATCATCCCAACGTTGCAACAATTC
TCAACAACTATGAAGAAGCCGAGCCTCTGTACAAGAGAACGCAGGAGATC
TTTGAGAAATCCTTGGGGCGGGATCATCCCAACGTTGCAACAATTCTCAA
CAAC
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