mRNA_P-lacustris_contig925.15679.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig925.15679.1
Unique NamemRNA_P-lacustris_contig925.15679.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig925.15679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig925contigP-lacustris_contig925:8996..9511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig925.15679.1prot_P-lacustris_contig925.15679.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig925 9090..9446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.9630995-UTR-P-lacustris_contig925:8995..90891622817352.9630995-UTR-P-lacustris_contig925:8995..9089Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig925 8996..9089 +
1693494999.2845829-UTR-P-lacustris_contig925:8995..90891693494999.2845829-UTR-P-lacustris_contig925:8995..9089Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig925 8996..9089 +
1622817352.9869447-UTR-P-lacustris_contig925:9446..95111622817352.9869447-UTR-P-lacustris_contig925:9446..9511Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig925 9447..9511 +
1693494999.3024695-UTR-P-lacustris_contig925:9446..95111693494999.3024695-UTR-P-lacustris_contig925:9446..9511Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig925 9447..9511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.974876-CDS-P-lacustris_contig925:9089..94461622817352.974876-CDS-P-lacustris_contig925:9089..9446Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig925 9090..9446 +
1693494999.2946007-CDS-P-lacustris_contig925:9089..94461693494999.2946007-CDS-P-lacustris_contig925:9089..9446Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig925 9090..9446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig925.15679.1

>prot_P-lacustris_contig925.15679.1 ID=prot_P-lacustris_contig925.15679.1|Name=mRNA_P-lacustris_contig925.15679.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=119bp
MSALGNKDRRHNKKTNEPLAANTLQQNKDITPNKKPKSQKDDTDEDNDND
NDNDVVRDCSSWNEWRTWHDMAMDQMDRSWRDYEGSILERDFFFSRTKKR
IETEKKVKGNLPRRDADA*
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mRNA from alignment at P-lacustris_contig925:8996..9511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig925.15679.1 ID=mRNA_P-lacustris_contig925.15679.1|Name=mRNA_P-lacustris_contig925.15679.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=516bp|location=Sequence derived from alignment at P-lacustris_contig925:8996..9511+ (Pleurocladia lacustris SAG_25_93)
TAAACAACACCCATCTCCGAACTAGCACGCCTTCCAGCCACCACTCCCTC
CCGTCATTCAAGCCTCTCTCCTCTCTCCTCTCCCTGGCTAAACGATGAGC
GCATTGGGAAACAAAGATCGACGTCACAACAAGAAGACCAATGAGCCGCT
CGCTGCCAACACGCTGCAACAAAACAAGGACATCACACCCAACAAAAAGC
CAAAAAGCCAAAAAGACGACACGGACGAGGATAACGATAACGACAACGAC
AACGACGTCGTTCGCGACTGTTCATCATGGAATGAATGGAGGACATGGCA
TGACATGGCCATGGATCAGATGGATCGATCATGGAGGGATTACGAAGGAA
GTATTTTGGAGCGAGATTTCTTTTTTTCGAGAACGAAAAAAAGAATTGAA
ACGGAAAAAAAAGTAAAGGGAAACTTACCACGACGGGATGCCGACGCCTG
ACCACCACAGCGCGTCTCACTGACGATGCCGTCAAGTCTGATGCGAAGCG
ATAGTGAACGCGTCCC
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Coding sequence (CDS) from alignment at P-lacustris_contig925:8996..9511+

>mRNA_P-lacustris_contig925.15679.1 ID=mRNA_P-lacustris_contig925.15679.1|Name=mRNA_P-lacustris_contig925.15679.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=714bp|location=Sequence derived from alignment at P-lacustris_contig925:8996..9511+ (Pleurocladia lacustris SAG_25_93)
ATGAGCGCATTGGGAAACAAAGATCGACGTCACAACAAGAAGACCAATGA
GCCGCTCGCTGCCAACACGCTGCAACAAAACAAGGACATCACACCCAACA
AAAAGCCAAAAAGCCAAAAAGACGACACGGACGAGGATAACGATAACGAC
AACGACAACGACGTCGTTCGCGACTGTTCATCATGGAATGAATGGAGGAC
ATGGCATGACATGGCCATGGATCAGATGGATCGATCATGGAGGGATTACG
AAGGAAGTATTTTGGAGCGAGATTTCTTTTTTTCGAGAACGAAAAAAAGA
ATTGAAACGGAAAAAAAAGTAAAGGGAAACTTACCACGACGGGATGCCGA
CGCCTGAATGAGCGCATTGGGAAACAAAGATCGACGTCACAACAAGAAGA
CCAATGAGCCGCTCGCTGCCAACACGCTGCAACAAAACAAGGACATCACA
CCCAACAAAAAGCCAAAAAGCCAAAAAGACGACACGGACGAGGATAACGA
TAACGACAACGACAACGACGTCGTTCGCGACTGTTCATCATGGAATGAAT
GGAGGACATGGCATGACATGGCCATGGATCAGATGGATCGATCATGGAGG
GATTACGAAGGAAGTATTTTGGAGCGAGATTTCTTTTTTTCGAGAACGAA
AAAAAGAATTGAAACGGAAAAAAAAGTAAAGGGAAACTTACCACGACGGG
ATGCCGACGCCTGA
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