mRNA_P-lacustris_contig92.15633.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig92.15633.1
Unique NamemRNA_P-lacustris_contig92.15633.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig92.15633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig92contigP-lacustris_contig92:41121..41487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size367
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.8109097-CDS-P-lacustris_contig92:41120..414291622817346.8109097-CDS-P-lacustris_contig92:41120..41429Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig92 41121..41429 +
1693494994.2834096-CDS-P-lacustris_contig92:41120..414291693494994.2834096-CDS-P-lacustris_contig92:41120..41429Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig92 41121..41429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817346.822002-UTR-P-lacustris_contig92:41429..414871622817346.822002-UTR-P-lacustris_contig92:41429..41487Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig92 41430..41487 +
1693494994.293554-UTR-P-lacustris_contig92:41429..414871693494994.293554-UTR-P-lacustris_contig92:41429..41487Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig92 41430..41487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig92.15633.1prot_P-lacustris_contig92.15633.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig92 41121..41429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig92.15633.1

>prot_P-lacustris_contig92.15633.1 ID=prot_P-lacustris_contig92.15633.1|Name=mRNA_P-lacustris_contig92.15633.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=103bp
AAIVWWWCQCVLWVFPAKTNQIHPYLWIRVQGNFLAKDGLLSSCCASFII
LLVRLRRNAKTSRHMYVPHRDIYIYIHDTLLHICSNSSACFHEWVGQPKE
AS*
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mRNA from alignment at P-lacustris_contig92:41121..41487+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig92.15633.1 ID=mRNA_P-lacustris_contig92.15633.1|Name=mRNA_P-lacustris_contig92.15633.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=367bp|location=Sequence derived from alignment at P-lacustris_contig92:41121..41487+ (Pleurocladia lacustris SAG_25_93)
GCTGCTATTGTTTGGTGGTGGTGCCAATGTGTCCTGTGGGTGTTTCCAGC
AAAAACAAATCAAATCCATCCGTATCTGTGGATACGCGTCCAAGGTAACT
TTTTAGCAAAAGATGGGTTGCTCTCGTCGTGCTGTGCCTCTTTTATTATT
TTGCTCGTGAGACTTCGTAGGAATGCCAAGACATCGAGACATATGTATGT
ACCACACAGAGACATTTATATATATATACACGACACGCTCTTGCACATAT
GTAGCAACAGCAGCGCTTGTTTCCATGAGTGGGTTGGGCAACCCAAGGAG
GCAAGCTAGTTGATGTGTGCACACAGTAGCCCTCGTCGGCCTTGCTTGTC
GCACCCCAGCAAAAGCC
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Coding sequence (CDS) from alignment at P-lacustris_contig92:41121..41487+

>mRNA_P-lacustris_contig92.15633.1 ID=mRNA_P-lacustris_contig92.15633.1|Name=mRNA_P-lacustris_contig92.15633.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=618bp|location=Sequence derived from alignment at P-lacustris_contig92:41121..41487+ (Pleurocladia lacustris SAG_25_93)
GCTGCTATTGTTTGGTGGTGGTGCCAATGTGTCCTGTGGGTGTTTCCAGC
AAAAACAAATCAAATCCATCCGTATCTGTGGATACGCGTCCAAGGTAACT
TTTTAGCAAAAGATGGGTTGCTCTCGTCGTGCTGTGCCTCTTTTATTATT
TTGCTCGTGAGACTTCGTAGGAATGCCAAGACATCGAGACATATGTATGT
ACCACACAGAGACATTTATATATATATACACGACACGCTCTTGCACATAT
GTAGCAACAGCAGCGCTTGTTTCCATGAGTGGGTTGGGCAACCCAAGGAG
GCAAGCTAGGCTGCTATTGTTTGGTGGTGGTGCCAATGTGTCCTGTGGGT
GTTTCCAGCAAAAACAAATCAAATCCATCCGTATCTGTGGATACGCGTCC
AAGGTAACTTTTTAGCAAAAGATGGGTTGCTCTCGTCGTGCTGTGCCTCT
TTTATTATTTTGCTCGTGAGACTTCGTAGGAATGCCAAGACATCGAGACA
TATGTATGTACCACACAGAGACATTTATATATATATACACGACACGCTCT
TGCACATATGTAGCAACAGCAGCGCTTGTTTCCATGAGTGGGTTGGGCAA
CCCAAGGAGGCAAGCTAG
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