mRNA_P-lacustris_contig918.15627.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig918.15627.1
Unique NamemRNA_P-lacustris_contig918.15627.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig918.15627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig918contigP-lacustris_contig918:68921..69658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817345.4641376-CDS-P-lacustris_contig918:68920..690371622817345.4641376-CDS-P-lacustris_contig918:68920..69037Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig918 68921..69037 +
1693494993.2276716-CDS-P-lacustris_contig918:68920..690371693494993.2276716-CDS-P-lacustris_contig918:68920..69037Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig918 68921..69037 +
1622817345.4762154-CDS-P-lacustris_contig918:69546..696571622817345.4762154-CDS-P-lacustris_contig918:69546..69657Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig918 69547..69657 +
1693494993.2371924-CDS-P-lacustris_contig918:69546..696571693494993.2371924-CDS-P-lacustris_contig918:69546..69657Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig918 69547..69657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig918.15627.1prot_P-lacustris_contig918.15627.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig918 68921..69657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig918.15627.1

>prot_P-lacustris_contig918.15627.1 ID=prot_P-lacustris_contig918.15627.1|Name=mRNA_P-lacustris_contig918.15627.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=76bp
PREVGQPSDSEVEDAKSSASDGGSASASGGGEASQHQSMVKQRLDEGLSG
GEAFKFLLRLVATHFDYEDRGDALTK
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mRNA from alignment at P-lacustris_contig918:68921..69658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig918.15627.1 ID=mRNA_P-lacustris_contig918.15627.1|Name=mRNA_P-lacustris_contig918.15627.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=738bp|location=Sequence derived from alignment at P-lacustris_contig918:68921..69658+ (Pleurocladia lacustris SAG_25_93)
CCGAGGGAGGTGGGCCAGCCCTCGGACTCGGAAGTGGAGGATGCGAAATC
TTCGGCTTCAGATGGCGGGAGTGCCTCCGCGTCGGGGGGAGGAGAGGCTT
CTCAACATCAATCCATGGTGAGACCATGTCTGGATTGATGAGCTCTCTTC
GTTCCCCCCGTCCCAAGCCTCGTAGGGTTCCCCCTTTGTCTTCCGTGGCA
GACTCCAACCGTGGTTGGATGTCGCGCAACAGTGTGTCGGTAGTACACAA
TGGTCTCCCCCTTTCGTCCCAGTTGGCTCGCACGCGTCAGGCTGAGTTGG
AAGAGGCAGCGAAGTTGGCCGAGATCGCTCGCGTTCGAGATATCGCCACC
AACTACACGAAAACCAAGATGCGTGAGATTAAAATATACCCCCGCATGCC
ATGGCAGCCAAGCCTTAAAAACGCGGTGCCACAGCTCCTAGACTCCATCT
CTGCCGCGGTCCTCGACATTTTGCAACAAGCGGACCCGTTTGTCGTGTTC
GAAGACTCGGATAGTTGGTGTCGAGGATGGGAAAATCCGTTACGAAAGGC
GATGATTTCAGCAGTTGTCACAGAGAAAGACACGACCGGCGAACTGATTT
CATCTATTAACGACATGTTTTCGCAGGTGAAGCAGAGGCTGGATGAGGGC
TTGAGCGGTGGCGAAGCCTTCAAGTTCCTCCTGCGGCTGGTAGCGACACA
CTTCGACTACGAGGATCGAGGCGATGCCTTGACAAAGT
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Coding sequence (CDS) from alignment at P-lacustris_contig918:68921..69658+

>mRNA_P-lacustris_contig918.15627.1 ID=mRNA_P-lacustris_contig918.15627.1|Name=mRNA_P-lacustris_contig918.15627.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=456bp|location=Sequence derived from alignment at P-lacustris_contig918:68921..69658+ (Pleurocladia lacustris SAG_25_93)
CCGAGGGAGGTGGGCCAGCCCTCGGACTCGGAAGTGGAGGATGCGAAATC
TTCGGCTTCAGATGGCGGGAGTGCCTCCGCGTCGGGGGGAGGAGAGGCTT
CTCAACATCAATCCATGCCGAGGGAGGTGGGCCAGCCCTCGGACTCGGAA
GTGGAGGATGCGAAATCTTCGGCTTCAGATGGCGGGAGTGCCTCCGCGTC
GGGGGGAGGAGAGGCTTCTCAACATCAATCCATGGTGAAGCAGAGGCTGG
ATGAGGGCTTGAGCGGTGGCGAAGCCTTCAAGTTCCTCCTGCGGCTGGTA
GCGACACACTTCGACTACGAGGATCGAGGCGATGCCTTGACAAAGGTGAA
GCAGAGGCTGGATGAGGGCTTGAGCGGTGGCGAAGCCTTCAAGTTCCTCC
TGCGGCTGGTAGCGACACACTTCGACTACGAGGATCGAGGCGATGCCTTG
ACAAAG
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