mRNA_P-lacustris_contig915.15604.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig915.15604.1
Unique NamemRNA_P-lacustris_contig915.15604.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig915.15604.1 vs. uniprot
Match: A0A6H5K2P4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.530e-5
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  334 RRMYGILSSRLVQDFVQAGTPLVQVGRMITQTVRAATGVELD 459
            RR YG+  + L Q++++AGTPL QVGR++  T+R ATGVELD
Sbjct:  163 RRSYGLNLAGLCQEYLEAGTPLCQVGRLVMSTLRLATGVELD 204
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BLAST of mRNA_P-lacustris_contig915.15604.1 vs. uniprot
Match: A0A6H5JNC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.350e-5
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  337 RMYGILSSRLVQDFVQAGTPLVQVGRMITQTVRAATGVELD 459
            R+YG+  +RL Q++++AGTP  QVGR++  T+R ATGVELD
Sbjct:  304 RLYGLNLARLCQEYLEAGTPRCQVGRLVMSTLRLATGVELD 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig915.15604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2P4_9PHAE1.530e-557.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNC8_9PHAE2.350e-556.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig915contigP-lacustris_contig915:35568..36284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003980.1
Exons2
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817343.0332947-CDS-P-lacustris_contig915:35567..356511622817343.0332947-CDS-P-lacustris_contig915:35567..35651Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig915 35568..35651 +
1693494991.1885924-CDS-P-lacustris_contig915:35567..356511693494991.1885924-CDS-P-lacustris_contig915:35567..35651Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig915 35568..35651 +
1622817343.0455196-CDS-P-lacustris_contig915:35900..362841622817343.0455196-CDS-P-lacustris_contig915:35900..36284Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig915 35901..36284 +
1693494991.2004151-CDS-P-lacustris_contig915:35900..362841693494991.2004151-CDS-P-lacustris_contig915:35900..36284Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig915 35901..36284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig915.15604.1prot_P-lacustris_contig915.15604.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig915 35568..36284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig915.15604.1

>prot_P-lacustris_contig915.15604.1 ID=prot_P-lacustris_contig915.15604.1|Name=mRNA_P-lacustris_contig915.15604.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=156bp
ARAARAAVRAVVSWGGGVKKKKQALTKQNQRYKKIIGELGTSLMRLRAEA
TKAVGTSQSLPPRELDRLIKGRVKDNVRPRQVLASEPEPEEEGDASELAT
STGKRKNKKLGRRMYGILSSRLVQDFVQAGTPLVQVGRMITQTVRAATGV
ELDGKT
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mRNA from alignment at P-lacustris_contig915:35568..36284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig915.15604.1 ID=mRNA_P-lacustris_contig915.15604.1|Name=mRNA_P-lacustris_contig915.15604.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=717bp|location=Sequence derived from alignment at P-lacustris_contig915:35568..36284+ (Pleurocladia lacustris SAG_25_93)
GCGCGCGCAGCACGAGCTGCAGTAAGAGCAGTGGTTTCCTGGGGTGGTGG
CGTCAAGAAGAAAAAGCAGGCTCTGACCAAGCAGGTGACCAGGTGGGAAT
GTTTTTTTTGCGCCTTTTTTTTTTCGTGACCGCACATACTCCACTCCGTC
TTTTTTTTCCTTTTCCCCTTCCCTTGTGTTCATTGATTGTTGCTTCCCAG
TTTGACGTCCACGCGCCGGCGGGTTGCAAGAGCACCAGTGTTGACAGAAT
TTGGTACACTTCCAACAACGGCGGTACGCTCTTGCTTCGCTTCCCCCTCT
GAGAAAAAATTCCCTTCCCTCTCCTCCCGCCAGAATCAGCGATACAAAAA
AATAATCGGCGAACTCGGCACATCGTTGATGCGACTTCGAGCTGAAGCTA
CAAAGGCCGTGGGTACCTCCCAGTCCCTGCCGCCCAGAGAACTGGATCGA
CTGATTAAAGGGAGGGTCAAAGACAACGTGCGTCCGCGCCAAGTACTCGC
CAGCGAGCCGGAGCCTGAGGAAGAGGGCGATGCGAGCGAACTTGCGACGA
GCACTGGAAAGCGGAAAAACAAGAAACTTGGCAGACGAATGTACGGCATC
CTCTCCTCTCGGCTTGTGCAGGACTTCGTTCAGGCCGGCACGCCGCTTGT
CCAGGTTGGTCGTATGATCACGCAAACAGTCAGAGCGGCTACCGGCGTGG
AGCTGGACGGCAAGACG
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Coding sequence (CDS) from alignment at P-lacustris_contig915:35568..36284+

>mRNA_P-lacustris_contig915.15604.1 ID=mRNA_P-lacustris_contig915.15604.1|Name=mRNA_P-lacustris_contig915.15604.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=936bp|location=Sequence derived from alignment at P-lacustris_contig915:35568..36284+ (Pleurocladia lacustris SAG_25_93)
GCGCGCGCAGCACGAGCTGCAGTAAGAGCAGTGGTTTCCTGGGGTGGTGG
CGTCAAGAAGAAAAAGCAGGCTCTGACCAAGCAGGCGCGCGCAGCACGAG
CTGCAGTAAGAGCAGTGGTTTCCTGGGGTGGTGGCGTCAAGAAGAAAAAG
CAGGCTCTGACCAAGCAGAATCAGCGATACAAAAAAATAATCGGCGAACT
CGGCACATCGTTGATGCGACTTCGAGCTGAAGCTACAAAGGCCGTGGGTA
CCTCCCAGTCCCTGCCGCCCAGAGAACTGGATCGACTGATTAAAGGGAGG
GTCAAAGACAACGTGCGTCCGCGCCAAGTACTCGCCAGCGAGCCGGAGCC
TGAGGAAGAGGGCGATGCGAGCGAACTTGCGACGAGCACTGGAAAGCGGA
AAAACAAGAAACTTGGCAGACGAATGTACGGCATCCTCTCCTCTCGGCTT
GTGCAGGACTTCGTTCAGGCCGGCACGCCGCTTGTCCAGGTTGGTCGTAT
GATCACGCAAACAGTCAGAGCGGCTACCGGCGTGGAGCTGGACGGCAAGA
CGAATCAGCGATACAAAAAAATAATCGGCGAACTCGGCACATCGTTGATG
CGACTTCGAGCTGAAGCTACAAAGGCCGTGGGTACCTCCCAGTCCCTGCC
GCCCAGAGAACTGGATCGACTGATTAAAGGGAGGGTCAAAGACAACGTGC
GTCCGCGCCAAGTACTCGCCAGCGAGCCGGAGCCTGAGGAAGAGGGCGAT
GCGAGCGAACTTGCGACGAGCACTGGAAAGCGGAAAAACAAGAAACTTGG
CAGACGAATGTACGGCATCCTCTCCTCTCGGCTTGTGCAGGACTTCGTTC
AGGCCGGCACGCCGCTTGTCCAGGTTGGTCGTATGATCACGCAAACAGTC
AGAGCGGCTACCGGCGTGGAGCTGGACGGCAAGACG
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