mRNA_P-lacustris_contig912.15583.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig912.15583.1
Unique NamemRNA_P-lacustris_contig912.15583.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig912.15583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig912contigP-lacustris_contig912:2570..3061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size492
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817340.5517344-CDS-P-lacustris_contig912:2569..30611622817340.5517344-CDS-P-lacustris_contig912:2569..3061Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig912 2570..3061 +
1693494989.2195175-CDS-P-lacustris_contig912:2569..30611693494989.2195175-CDS-P-lacustris_contig912:2569..3061Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig912 2570..3061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig912.15583.1prot_P-lacustris_contig912.15583.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig912 2570..3061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig912.15583.1

>prot_P-lacustris_contig912.15583.1 ID=prot_P-lacustris_contig912.15583.1|Name=mRNA_P-lacustris_contig912.15583.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=164bp
MLSPRKAPMFIEDGLTSGVGQSYSCCHDARYHNDSGQRTHHRGALLFLSV
GVASLPPSLHLLGELRRSLTLPPLSHGSGVTLPSTLGCVLYGLGVVALKT
GRVTGPLWPVPESQGVSYKCKKEQAVKFRGCSILQMCEERLGIYEQSYKC
KNPSYICKKKVVR*
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mRNA from alignment at P-lacustris_contig912:2570..3061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig912.15583.1 ID=mRNA_P-lacustris_contig912.15583.1|Name=mRNA_P-lacustris_contig912.15583.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=492bp|location=Sequence derived from alignment at P-lacustris_contig912:2570..3061+ (Pleurocladia lacustris SAG_25_93)
ATGCTGAGCCCACGGAAGGCGCCGATGTTCATCGAGGACGGCCTTACATC
AGGTGTGGGCCAGAGCTACTCCTGTTGCCACGACGCTCGCTATCACAACG
ACAGCGGTCAACGCACCCATCACCGAGGCGCTCTGCTGTTCCTCTCCGTC
GGAGTGGCGTCGCTTCCTCCGTCGCTCCATCTTCTTGGCGAGCTCAGGCG
AAGCCTCACGCTTCCTCCGCTCAGCCATGGTTCGGGTGTGACCTTGCCTA
GCACCCTGGGCTGCGTTCTGTACGGTCTAGGTGTAGTGGCGCTCAAGACG
GGACGCGTGACCGGTCCTCTTTGGCCAGTGCCCGAAAGCCAGGGTGTTTC
TTACAAATGTAAGAAGGAGCAAGCTGTAAAATTTCGGGGGTGCTCAATCT
TACAAATGTGCGAAGAACGCCTCGGTATATATGAACAATCTTACAAATGT
AAGAACCCATCTTACATTTGTAAGAAAAAAGTGGTTCGATAA
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Coding sequence (CDS) from alignment at P-lacustris_contig912:2570..3061+

>mRNA_P-lacustris_contig912.15583.1 ID=mRNA_P-lacustris_contig912.15583.1|Name=mRNA_P-lacustris_contig912.15583.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=984bp|location=Sequence derived from alignment at P-lacustris_contig912:2570..3061+ (Pleurocladia lacustris SAG_25_93)
ATGCTGAGCCCACGGAAGGCGCCGATGTTCATCGAGGACGGCCTTACATC
AGGTGTGGGCCAGAGCTACTCCTGTTGCCACGACGCTCGCTATCACAACG
ACAGCGGTCAACGCACCCATCACCGAGGCGCTCTGCTGTTCCTCTCCGTC
GGAGTGGCGTCGCTTCCTCCGTCGCTCCATCTTCTTGGCGAGCTCAGGCG
AAGCCTCACGCTTCCTCCGCTCAGCCATGGTTCGGGTGTGACCTTGCCTA
GCACCCTGGGCTGCGTTCTGTACGGTCTAGGTGTAGTGGCGCTCAAGACG
GGACGCGTGACCGGTCCTCTTTGGCCAGTGCCCGAAAGCCAGGGTGTTTC
TTACAAATGTAAGAAGGAGCAAGCTGTAAAATTTCGGGGGTGCTCAATCT
TACAAATGTGCGAAGAACGCCTCGGTATATATGAACAATCTTACAAATGT
AAGAACCCATCTTACATTTGTAAGAAAAAAGTGGTTCGATAAATGCTGAG
CCCACGGAAGGCGCCGATGTTCATCGAGGACGGCCTTACATCAGGTGTGG
GCCAGAGCTACTCCTGTTGCCACGACGCTCGCTATCACAACGACAGCGGT
CAACGCACCCATCACCGAGGCGCTCTGCTGTTCCTCTCCGTCGGAGTGGC
GTCGCTTCCTCCGTCGCTCCATCTTCTTGGCGAGCTCAGGCGAAGCCTCA
CGCTTCCTCCGCTCAGCCATGGTTCGGGTGTGACCTTGCCTAGCACCCTG
GGCTGCGTTCTGTACGGTCTAGGTGTAGTGGCGCTCAAGACGGGACGCGT
GACCGGTCCTCTTTGGCCAGTGCCCGAAAGCCAGGGTGTTTCTTACAAAT
GTAAGAAGGAGCAAGCTGTAAAATTTCGGGGGTGCTCAATCTTACAAATG
TGCGAAGAACGCCTCGGTATATATGAACAATCTTACAAATGTAAGAACCC
ATCTTACATTTGTAAGAAAAAAGTGGTTCGATAA
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