mRNA_P-lacustris_contig91.15567.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig91.15567.1
Unique NamemRNA_P-lacustris_contig91.15567.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig91.15567.1 vs. uniprot
Match: D7G1G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-15
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:  118 ASPRSPGA-EELSSWKVVGRGLLGRDSATRTGRLVVSGLGSAGRVV-EARSSAPTLTSAGLYAGGMRHGNGGR 330
            ASP SPG+ E+ SSWKV GRGLLGR SA + GRL+V+GLGSAGRV   AR+SAP L S GLY  G R G GGR
Sbjct:  434 ASPASPGSSEKFSSWKVGGRGLLGRGSAKKNGRLLVTGLGSAGRVGGPARASAPVLASPGLYLDGARRGGGGR 506
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BLAST of mRNA_P-lacustris_contig91.15567.1 vs. uniprot
Match: A0A6H5JHC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.670e-14
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:  118 ASPRSPGA-EELSSWKVVGRGLLGRDSATRTGRLVVSGLGSAGRVV-EARSSAPTLTSAGLYAGGMRHGNGGR 330
            ASP SPG+ E+ SSWKV GRGLLGR SA +TGRL+V GLGSAGRV   AR++A  L SAGL   G R G GGR
Sbjct:  411 ASPASPGSSEKFSSWKVGGRGLLGRGSAKKTGRLLVGGLGSAGRVGGPARAAAQVLASAGLDLEGERRGGGGR 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig91.15567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1G0_ECTSI1.240e-1567.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHC6_9PHAE9.670e-1465.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig91contigP-lacustris_contig91:257430..257759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.8112118-CDS-P-lacustris_contig91:257429..2577591622817337.8112118-CDS-P-lacustris_contig91:257429..257759Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig91 257430..257759 +
1693494986.8477514-CDS-P-lacustris_contig91:257429..2577591693494986.8477514-CDS-P-lacustris_contig91:257429..257759Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig91 257430..257759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig91.15567.1prot_P-lacustris_contig91.15567.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig91 257430..257759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig91.15567.1

>prot_P-lacustris_contig91.15567.1 ID=prot_P-lacustris_contig91.15567.1|Name=mRNA_P-lacustris_contig91.15567.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=110bp
APAAADGDYGGEQQRQQGGDRPTPTSVAPPPPAVALFRSASPRSPGAEEL
SSWKVVGRGLLGRDSATRTGRLVVSGLGSAGRVVEARSSAPTLTSAGLYA
GGMRHGNGGR
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mRNA from alignment at P-lacustris_contig91:257430..257759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig91.15567.1 ID=mRNA_P-lacustris_contig91.15567.1|Name=mRNA_P-lacustris_contig91.15567.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=330bp|location=Sequence derived from alignment at P-lacustris_contig91:257430..257759+ (Pleurocladia lacustris SAG_25_93)
GCCCCAGCCGCCGCGGACGGTGATTACGGTGGCGAGCAACAGAGGCAACA
AGGCGGCGACCGGCCAACACCTACTAGCGTAGCACCGCCGCCGCCAGCTG
TTGCACTTTTCAGGTCTGCCTCTCCGAGGTCCCCGGGCGCAGAGGAGCTT
TCTTCCTGGAAGGTGGTAGGCAGGGGGCTTCTTGGGAGAGACTCGGCGAC
GAGGACCGGGAGGCTGGTGGTCTCGGGGCTTGGTTCTGCTGGGCGGGTGG
TGGAGGCCCGATCCTCGGCCCCGACGTTGACGTCCGCGGGACTGTACGCG
GGTGGTATGAGGCATGGGAATGGCGGCAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig91:257430..257759+

>mRNA_P-lacustris_contig91.15567.1 ID=mRNA_P-lacustris_contig91.15567.1|Name=mRNA_P-lacustris_contig91.15567.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=660bp|location=Sequence derived from alignment at P-lacustris_contig91:257430..257759+ (Pleurocladia lacustris SAG_25_93)
GCCCCAGCCGCCGCGGACGGTGATTACGGTGGCGAGCAACAGAGGCAACA
AGGCGGCGACCGGCCAACACCTACTAGCGTAGCACCGCCGCCGCCAGCTG
TTGCACTTTTCAGGTCTGCCTCTCCGAGGTCCCCGGGCGCAGAGGAGCTT
TCTTCCTGGAAGGTGGTAGGCAGGGGGCTTCTTGGGAGAGACTCGGCGAC
GAGGACCGGGAGGCTGGTGGTCTCGGGGCTTGGTTCTGCTGGGCGGGTGG
TGGAGGCCCGATCCTCGGCCCCGACGTTGACGTCCGCGGGACTGTACGCG
GGTGGTATGAGGCATGGGAATGGCGGCAGGGCCCCAGCCGCCGCGGACGG
TGATTACGGTGGCGAGCAACAGAGGCAACAAGGCGGCGACCGGCCAACAC
CTACTAGCGTAGCACCGCCGCCGCCAGCTGTTGCACTTTTCAGGTCTGCC
TCTCCGAGGTCCCCGGGCGCAGAGGAGCTTTCTTCCTGGAAGGTGGTAGG
CAGGGGGCTTCTTGGGAGAGACTCGGCGACGAGGACCGGGAGGCTGGTGG
TCTCGGGGCTTGGTTCTGCTGGGCGGGTGGTGGAGGCCCGATCCTCGGCC
CCGACGTTGACGTCCGCGGGACTGTACGCGGGTGGTATGAGGCATGGGAA
TGGCGGCAGG
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