mRNA_P-lacustris_contig909.15542.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig909.15542.1 vs. uniprot
Match: D7FYB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB1_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 4.610e-124 Identity = 272/504 (53.97%), Postives = 322/504 (63.89%), Query Frame = 2
Query: 3932 QDAEGAALEQLDAQIKEDPGVDQAALERLRIRRRQKMENIADTNGRLAVVLSQHEHMWERVMKSYKWVHHLPQVSIKNRQFASIKEWIEAEIADQRKERKKLERAAHRRLKLLKSRSLRQSQRDQPSTSTGGLAPLLVTSFSGNVGHSSRSKADASELRGTRYGYGNDRGNLGPLGPLGSQRNSNIDNLVKGTLRKGAAAGFGSGET-PYYLRGGEAMPAAQNLQARR*TKENIYARNAIYGNQHFHHLPSGSVGLASPSSSAHIVSIPYPAAEKGSSPQPTPT----RAERGEMDSYKAELAGSAGGNRVGINERTSRMPNEVPASEHQRYKSLLTNAPGELPGVTVIRVVGDGKNNVPGRTASSQDRTISNSGIFEREWRNASTGXXXXXXXXXTNQPTNFRRAQTAKVDYHNTVRRKSSNTSFTHPVGHPSGVDALMQSLSRIDSMGGRGGGQ-TDAAAAAEGGSSLTRDLARPASVASTGGPARVQGP---PSRWIPGAA 5416
Q AEGAALEQLDAQI+ED G+D+ ALE LR++RRQK++ IAD N RL V LSQHE+MWER MKSYKWVHHLPQ+S+KNRQ+AS++EWIEAEIADQR+ERKKLERAA RLK L+ RSL S +DQ S +TGGLAP+LVTS SGNVGHSSR K A L G YGYG++R + G LG +RN +KG+ R A AG E +LRGGE A + +A R T++N + RN ++ +H H G G ASPSS A S P E+G Q TPT G M YKA + N V + TSRM E E+QRYKSL TNAP ELP VTV+ G NN+ +++D +IS S RE G NQPTN+RRAQTAKVDYHN+VRRKSSNTSFTH VGHP G+DAL S SR++S+ G G GQ AAA G S TR+LARP SV GG A GP P RWIPG A
Sbjct: 9 QAAEGAALEQLDAQIEEDSGLDEPALEHLRVKRRQKVKKIADANARLVVALSQHENMWERAMKSYKWVHHLPQISVKNRQYASVQEWIEAEIADQRRERKKLERAARLRLKRLQPRSLMHSHQDQSSLTTGGLAPVLVTSLSGNVGHSSRPKVTAPGLSGGSYGYGDERVSFGAPANLGHKRN------LKGSQRTEAIAGVNGAELLSNFLRGGEMPSTALHFRAARETEKN-HPRNPLH--EHQHRPTPGYAGSASPSSPAF--SRTSPGTERGPFRQATPTLDGPAGGHGGMGGYKAGFDVT---NSVNNSGHTSRMAKEA---ENQRYKSLFTNAPAELPEVTVMPAGGGDNNNLQVGGTNARDLSISTSRADSREDMKVKAGGGSDGMAGP-NQPTNYRRAQTAKVDYHNSVRRKSSNTSFTHQVGHPGGLDALAPSQSRVESLKGWGEGQPVVVAAAGRGDPSGTRELARPVSV--VGGSAATTGPHEEPFRWIPGKA 492
BLAST of mRNA_P-lacustris_contig909.15542.1 vs. uniprot
Match: D7FYB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB0_ECTSI) HSP 1 Score: 432 bits (1111), Expect = 2.690e-119 Identity = 482/1398 (34.48%), Postives = 651/1398 (46.57%), Query Frame = 2
Query: 8 TAEDEVDWLHDALADAEQNKDELLDEMEAMAESRDKMRMDIFESHCQIQRMTVHGTSLRRQEAESAKLLTKIEGLLREVTGCIDLKEHKPILAQVEETLSVVQKRNADERAEKMARARDRIDSENRARIEKTLNAMRLGDNGLIAGRLARAPAHLRPLLAIFLNPSFHKAFLAYAQHVARGEIVLPPGSALARHAATSPQM--SSSSSEKIPVAADVRHHPPRRAISLDYPATCPGHGATTPAAVAAVASVPPLVTGLERRRQLTFGDLPPTKSEASLIAAGKDRSATGCQNGDRIVGGRGGGGRGVTAVATRAVDTT-----------------RNVGRETW-------------------G*SARQTGAKPTRG*SGEGTVKG-RTSA*LSPPRLRSVEQLGLLHIGMAREVRLENFPQQVRPLLLRHKRRPRQRERR*VRSIS-------------GPSSSTTWCRRTSRSTRVNSKNV*DGKKKISENANHNATHWKPRLPKSSSQAS-IKTGWTRNFEPRSRV*RPDH*GSKNCLAYPLRRPLPD*RPSKNTLSR*PTTRRRRTPQARPXNXXRGH*LLLLQLPPPLMVPRRSRKRVAFWTQKWQPRTRLCRTPNEALCLKSQRLQSSRRGS*SR*WKTRPRPRRSWRGCRLSPCLRGWSCWQRREPSSARMIVRASRRTKE*KRSWSATFLRPTYWRSA*PWQKPQSSREREPHFYIANILQSQRRPIVVGTTRKQPKTNAAWR------SSRRASRLATSTTSRFSEGFSSNRWTMRYR--PCGN------PITAAHDTTHSGLPPG-RLEK*VRQPPILGEGGESSGRRYRR*KAILLQLVTKTSDYGRMSSGSGWRHG*--GGN*AERGLEIRGFPRRERWRGKR*RRCGELARRGRGTHAPDCKRR---LECPAHGVPGKSGRTGSVSGPC-----IGKKWAGGPSRDRRRCSQSGDVSLGRSQQSPELPCRRNNDRSTGGPPLRELMPMTTTTKSQEPAQLHSNTSNVTGTGNVTNTVATATNKTQEGDTISVMLPDGNFLNVPIHLEGLPLSAVTNALSLDINRIQAVTKYLISGMVRGLSAAAPXXXXXXXXXXXXXXXA---QQKRGD------NYINSLSTPAVNPPVAIRPPWTPAPEGSSSGGDSEEAHSTASSGGRCLSEKVGGANKRAATQEPPNCSLQIVLQMT--QSTYDVSALTTRTETPERGQQDEETSTSLSLPQTSCEDSLSAQEGVTQAELDEAWERAREMEETAWGLRGVVEERGEVIGLLQREVEELKAALAAAETRPSASAAAGTPAIDPNLEEVLQKAMLELGEEREFLADTTRKLDKSLEERERLVKQVAEAKVKEAQLETLLDEVCERERRLVAKITELQQLKASQ 3934
TAE E D LH L DAEQN +EL +E+ A+AESR KMR+++ E+HCQIQRMTV SLRRQ ++ LL+K E LLREVTGCID KE+ +V E LS ++KR DERA KM RARDRI++ENRARIEK LNA+RL +AGRL RAPAHLR +LA+FL+PSF KAF+ Y + ARGE+VLP SAL + A +S M SS RRAISLDYP TCPGHG TTPAA AA ASVP L GLERRRQ+ FGDLPPTKSEA++IA+GK RS+ G R GG+GGG G V R T +N G + W G SAR +G + T +G T+A + + L +++ + ++ + + R L+ R + +R + ++S GP R R V G ++ E + ++ R + AS + ++ + S + A S +T T R + P + +P P + +++ K + +L T E++ + L+ R + R+ + + A+ +E L + R + R +E +++ L + P V T ++ + W + RR + L+ S + R +++ G+ P + +TT +G G + P E + R A L V + + GWR G N E +++ P W + R + + + LE A VP G G + + W G GDV L R N T PP L T SQ + S+V+ T + N +A+ N E D I +ML D FL VP+HLE LPL VTNALS+DI+R+ A TKY+++G++R LSA XXXXXXXXXXXX A Q+RG N + S + P A P TP P+ D ++S SEKV A A +E P+ V + Q+ D S TTRT T E G +D TS +L +D+ +E VTQAE+DEAWERAREMEETA GLR VVEER VI LLQRE+ +LK ALA A++ S TP DP+LE+ LQKAM+ LGEER FLADTT+KLD SLEER+RL+ +VAEA +KE QL+T+LDEVCERE +LVA++TELQQLKASQ
Sbjct: 903 TAESEADLLHHDLMDAEQNIEELEEEVGALAESRAKMRVEVHEAHCQIQRMTVERASLRRQGVDTTNLLSKTEALLREVTGCIDQKENMATYTRVAELLSAIRKRKIDERAVKMNRARDRIEAENRARIEKALNALRLRSQDSVAGRLERAPAHLRGILAVFLDPSFQKAFVDYTKRFARGEVVLP--SALHKQATSSANMFISSXXXXXXXXXXXXXXXXXRRAISLDYPETCPGHGPTTPAAAAAAASVPALAKGLERRRQVMFGDLPPTKSEANMIASGKHRSSIAAPGG-RNAGGKGGGAVGPDGVGVRRNQQTGKRKSRXXXXXSADGGSKNPGTQ-WRRHREGSDFSMTLTAESAVGRSARTPSKGGGQGGAALVTEQGSETAATAQAAAVATAAALEEINVRVG-QLDAQRKDLEGRERQLQEDLRFEEDAQRELGAMSDGVEAEAAKIDKPGPEKD-----RLEEELRAAISKVEAGAARLEELSQLSSAATAARKEAEDAYASAVXXXXXXXXXXKATMSVEGALASGSTSARSAGS-------SDSTTLAVATASPERAGETHPCSTASSS-----GMPNPAEIEA-TKELKGLMEAKSEAAKKLAGTSLESILTAVKLLRKKRT-------ELNKDDRKGIEXXXXXXXXXXXXXXXXXMVEVSVALAEAALHKRE------GVALLKHHQRRKRQQGDHRRLRSKENLGNVSSPLGNT--PAAVDTADEEM-VDRCWNDEKAAETERRLAILSKSLEASDIHDLQVLRKSLQRELDDVGSALRESKPSRSRVETTSAGEGEGYTYSSTAGEEPAAAETTDEDERWKAEVLAHRLDAVERA-----VERKGGWRSAVFLGKNGGEVNVDVDVEP----WPAADGVLMLQTVRDALHVQLMESRSKVEELEDMAALVPSSEGLGGHLEAAADLHRAVTLLWEG-----------VGDV----------LKSRAEN--RTAEPPAEPLSSQELTPMSQVQDKPRPTASDVSDTSVIDNAIASTANGAGENDPILMMLQDEEFLEVPMHLEDLPLPIVTNALSVDIDRVTATTKYVVAGVLRQLSAXXXXXXXXXXXXXXXKYSAAEAHQRRGTLPQDPPNPVVPPSAVKASLPAANVPLGTPTPQELPPDDDIRSSNSGQEELSEPASEKVSVAGSEAEIEETPSTEDAGVNNDSGLQAEDDASTSTTRTATSE-GLEDTTTSPALPPEPIPEDDASDHEERVTQAEVDEAWERAREMEETARGLRDVVEEREGVIDLLQREITDLKTALATADSGSRPSNTVETPFTDPHLEQELQKAMVALGEERAFLADTTQKLDTSLEERDRLLDEVAEANMKERQLQTMLDEVCERENQLVAQMTELQQLKASQ 2228
BLAST of mRNA_P-lacustris_contig909.15542.1 vs. uniprot
Match: A0A6H5KRY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY7_9PHAE) HSP 1 Score: 387 bits (994), Expect = 1.130e-114 Identity = 269/539 (49.91%), Postives = 322/539 (59.74%), Query Frame = 2
Query: 3932 QDAEGAALEQLDAQIKEDPGVDQAALERLRIRRRQKMENIADTNGRLAV--------------VLSQHEHMWERVMKSYKWVHHLPQV------------------------SIKNRQFASIKEWIEAEIADQRKERKKLERAAHRRLKLLKSRSLRQSQRDQPSTSTGGLAPLLVTSFSGNVGHSSRSKADASELRGTRYGYGNDRGNLGPLGPLGSQRNSNIDNLVKGTLRKGAAAGFGSGET-PYYLRGGEAMPAAQNLQARR*TKENIYARNAIYGNQHFHHLPSGSVGLASPSSSAHIVSIPYPAAEKGSSPQPTPT----RAERGEMDSYKAELAGSAGGNRVGINERTSRMPNEVPASEHQRYKSLLTNAPGELPGVTVIRVVGDGKNNVPGRTASSQDRTISNSGIFEREWRNASTGXXXXXXXXXTNQPTNFRRAQTAKVDYHNTVRRKSSNTSFTHPVGHPSGVDALMQSLSRIDSMGGRGGGQ-TDAAAAAEGGSSLTRDLARPASVASTGGPARVQGP---PSRWIP 5407
Q AEGAALEQLDAQI+ED G+D+ ALE+LR++RRQK+ IAD N RL V LSQHE+MWER MKSYKWVHHLPQV S+KNRQ+AS++ WIEAEIADQR+ERKKLERAA RLK L+ RSL S++DQ S STGGLAP+L TS SGNVGHSSR K A+ L G YGYG+DR + G G QRN +KG+ R A AG E +LRGGE N +A R T++N + R+ ++ +H H G G ASPSS+A S P E+G S Q TPT A G + YK G+ N V + RTS+M E +HQRYKSL TN+P ELP VTV+ G NN+ +++DR++S S RE G N PTN+RRAQTAKVDYHN+VRRKSSNTSFTHPVGHP G+DAL S SR++S+ G G GQ A A G SS TR LARP SV +G A GP P RWIP
Sbjct: 9 QAAEGAALEQLDAQIEEDSGLDKPALEQLRVKRRQKVNKIADANARLVVRNSHQIHSFQLSLVALSQHENMWERAMKSYKWVHHLPQVRETRTTVAHVMWVNPFPPKCAAWISVKNRQYASVQGWIEAEIADQRRERKKLERAARLRLKRLQPRSLMHSRQDQSSLSTGGLAPVLGTSLSGNVGHSSRPKVTAAGLSGGIYGYGDDRVSFGAPASFGHQRN------LKGSQRTEAIAGANGAERLSNFLRGGEMPSTPLNFRAARETEKN-HPRDPLH--EHQHRPTPGYAGSASPSSTAF--SRTSPGTERGPSRQATPTLDGPAAGHGGIGGYKVGFDGT---NSVHNSGRTSQMAKEA---DHQRYKSLFTNSPAELPEVTVMPAGGGDNNNLQVGGTNARDRSMSTSRAASREDMKVKAGRGSDGMAGP-NHPTNYRRAQTAKVDYHNSVRRKSSNTSFTHPVGHPGGLDALAPSQSRVESLRGWGEGQPVVVAVAGRGDSSGTRGLARPVSV--SGRSAATTGPHEEPFRWIP 527
BLAST of mRNA_P-lacustris_contig909.15542.1 vs. uniprot
Match: A0A6H5KQR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR0_9PHAE) HSP 1 Score: 315 bits (808), Expect = 4.340e-83 Identity = 187/303 (61.72%), Postives = 221/303 (72.94%), Query Frame = 2
Query: 8 TAEDEVDWLHDALADAEQNKDELLDEMEAMAESRDKMRMDIFESHCQIQRMTVHGTSLRRQEAESAKLLTKIEGLLREVTGCIDLKEHKPILAQVEETLSVVQKRNADERAEKMARARDRIDSENRARIEKTLNAMRLGDNGLIAGRLARAPAHLRPLLAIFLNPSFHKAFLAYAQHVARGEIVLPPGSALARHAATSPQM-SSSSSEKIPVAADVRHHPP-RRAISLDYPATCPGHGATTPAAVAAVASVPPLVTGLERRRQLTFGDLPPTKSEASLIAAGKDRSATGCQNGDRIVGGRGGG 910
TAE E D LH L DAEQN +EL DE+ A+AESR KMRM++ ++HCQIQRMTV SLRRQ ++A LL+K E LLREVTGCID KE+ P +V E LS ++KR DERA KM RARDRI++ENRARIEK LNA+RL +AGRL RAPAHL +L++FL+PSF KAFL YA+ ARGE+VLP SAL + A +S M +SSS E +A D +PP RRAISLDYP TC GHG TTP A AA ASVP L GLERRRQ+ FGDLPPTKSEA++IAAG+ RS+ R GG GGG
Sbjct: 503 TAEGEADLLHHDLVDAEQNIEELQDEVGALAESRAKMRMEVHQAHCQIQRMTVERASLRRQGVDTANLLSKTEALLREVTGCIDQKENMPTYTRVAELLSAIRKRKIDERAVKMNRARDRIEAENRARIEKALNALRLRSQDSVAGRLERAPAHLHGILSVFLDPSFQKAFLDYAKRYARGEVVLP--SALHKQATSSANMFTSSSKESEKIAGDGGGNPPPRRAISLDYPETCLGHGPTTPTAAAAAASVPALANGLERRRQVMFGDLPPTKSEANMIAAGRHRSSLTAPG--RNAGGEGGG 801
BLAST of mRNA_P-lacustris_contig909.15542.1 vs. uniprot
Match: A0A836C7P2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7P2_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.650e-8 Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 2
Query: 4049 IADTNGRLAVVLSQHEHMWERVMKSYKWVHHLPQVSIKNRQFASIKEWIEAEIADQRKERKKLER 4243
+A + RLA + +QHE++WER ++SYKWVHHLP V++ R F SI+ W+ AE+A Q + R++ ER
Sbjct: 3198 VARNSARLAALGAQHENLWERAIRSYKWVHHLPMVAVGERHFPSIEAWVRAELAAQARARRRAER 3262 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig909.15542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig909.15542.1 >prot_P-lacustris_contig909.15542.1 ID=prot_P-lacustris_contig909.15542.1|Name=mRNA_P-lacustris_contig909.15542.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=617bp MPMTTTTKSQEPAQLHSNTSNVTGTGNVTNTVATATNKTQEGDTISVMLPback to top mRNA from alignment at P-lacustris_contig909:56446..71593- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig909.15542.1 ID=mRNA_P-lacustris_contig909.15542.1|Name=mRNA_P-lacustris_contig909.15542.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=15148bp|location=Sequence derived from alignment at P-lacustris_contig909:56446..71593- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig909:56446..71593- >mRNA_P-lacustris_contig909.15542.1 ID=mRNA_P-lacustris_contig909.15542.1|Name=mRNA_P-lacustris_contig909.15542.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3702bp|location=Sequence derived from alignment at P-lacustris_contig909:56446..71593- (Pleurocladia lacustris SAG_25_93)back to top |