mRNA_P-lacustris_contig908.15536.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig908.15536.1
Unique NamemRNA_P-lacustris_contig908.15536.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig908.15536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig908contigP-lacustris_contig908:74598..74925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817334.1780202-CDS-P-lacustris_contig908:74597..749241622817334.1780202-CDS-P-lacustris_contig908:74597..74924Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig908 74598..74924 +
1693494983.8363318-CDS-P-lacustris_contig908:74597..749241693494983.8363318-CDS-P-lacustris_contig908:74597..74924Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig908 74598..74924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig908.15536.1prot_P-lacustris_contig908.15536.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig908 74598..74924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig908.15536.1

>prot_P-lacustris_contig908.15536.1 ID=prot_P-lacustris_contig908.15536.1|Name=mRNA_P-lacustris_contig908.15536.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=109bp
DLVIRFTDQVFAAVPLKTISDANLLEFPEACRADIWRLASRLSARVDPES
QASVSLEQYVSEIARGRIRSDDIIASTTGLLETLRKAFSGLPSRGTNVQW
SADPSFTMV
back to top

mRNA from alignment at P-lacustris_contig908:74598..74925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig908.15536.1 ID=mRNA_P-lacustris_contig908.15536.1|Name=mRNA_P-lacustris_contig908.15536.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=328bp|location=Sequence derived from alignment at P-lacustris_contig908:74598..74925+ (Pleurocladia lacustris SAG_25_93)
GATCTGGTGATCCGGTTCACCGACCAAGTGTTCGCCGCCGTCCCCCTCAA
GACGATTTCGGACGCGAATTTGTTGGAGTTTCCCGAAGCGTGCCGTGCAG
ACATCTGGAGGCTCGCCAGCCGTTTGTCTGCCAGGGTAGATCCGGAGTCC
CAGGCGTCTGTTTCACTGGAGCAATATGTTTCGGAGATCGCCCGTGGCCG
CATCCGCAGTGACGACATCATAGCTAGCACCACCGGCCTGCTGGAGACCC
TCCGGAAGGCGTTTTCGGGGCTCCCCAGCAGGGGAACCAACGTCCAATGG
TCTGCCGACCCCTCATTCACCATGGTGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig908:74598..74925+

>mRNA_P-lacustris_contig908.15536.1 ID=mRNA_P-lacustris_contig908.15536.1|Name=mRNA_P-lacustris_contig908.15536.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=654bp|location=Sequence derived from alignment at P-lacustris_contig908:74598..74925+ (Pleurocladia lacustris SAG_25_93)
GATCTGGTGATCCGGTTCACCGACCAAGTGTTCGCCGCCGTCCCCCTCAA
GACGATTTCGGACGCGAATTTGTTGGAGTTTCCCGAAGCGTGCCGTGCAG
ACATCTGGAGGCTCGCCAGCCGTTTGTCTGCCAGGGTAGATCCGGAGTCC
CAGGCGTCTGTTTCACTGGAGCAATATGTTTCGGAGATCGCCCGTGGCCG
CATCCGCAGTGACGACATCATAGCTAGCACCACCGGCCTGCTGGAGACCC
TCCGGAAGGCGTTTTCGGGGCTCCCCAGCAGGGGAACCAACGTCCAATGG
TCTGCCGACCCCTCATTCACCATGGTGGATCTGGTGATCCGGTTCACCGA
CCAAGTGTTCGCCGCCGTCCCCCTCAAGACGATTTCGGACGCGAATTTGT
TGGAGTTTCCCGAAGCGTGCCGTGCAGACATCTGGAGGCTCGCCAGCCGT
TTGTCTGCCAGGGTAGATCCGGAGTCCCAGGCGTCTGTTTCACTGGAGCA
ATATGTTTCGGAGATCGCCCGTGGCCGCATCCGCAGTGACGACATCATAG
CTAGCACCACCGGCCTGCTGGAGACCCTCCGGAAGGCGTTTTCGGGGCTC
CCCAGCAGGGGAACCAACGTCCAATGGTCTGCCGACCCCTCATTCACCAT
GGTG
back to top