mRNA_P-lacustris_contig9.15460.1 (mRNA) Pleurocladia lacustris SAG_25_93
|
Overview
Homology
BLAST of mRNA_P-lacustris_contig9.15460.1 vs. uniprot
Match: A0A6H5JJD6_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJD6_9PHAE) HSP 1 Score: 374 bits (961), Expect = 5.490e-116 Identity = 385/802 (48.00%), Postives = 447/802 (55.74%), Query Frame = 1
Query: 19 EAAFQAAREGDVDGVRACLEGGIEADMVNPRTGRTLLHVACRQGYPEVASLLLSNGANPGAVTLRHLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNARVSDRRDNVTPXXXXXXXXXXXXXXXXXXXXXDSSAKDSNGAFPDGVIGDGSPSTVDPACARQLSEVVAGHRSRIKGAPSSLECVVDSLRSKVSELEDQLERSRRNRLEVMAYASDENRSTFSAALRPECPVCQVEVKEAVLDPCRHLAACASCADSLQSCSFCSCPVRGYQLLESRQVYERKLAWEDEVAGLRAQSERFSRRVRDLVAGNGRLKLDVRRARAEVLVLIAERQGLEQRFLLRTPSPPSTSHEVDTASIITDNSVGGFEGGEGNKPHSKFILTREESTGAKISGDGGVSGKEWQRKLGVVRSGGGSSAGASLDESNVVVHDCSVPDDAGDISVLRSPFVCAMGNGRIGRV-ESNRSQFSTEGANTRLKLGDVGASSNDDLSNTER--------------DGENDARSCISPNRFTG----------------------------------------------STAAFNTGHATDGAV---------------DVDIRLDLDLARLA----------------QSERAFSSRSLRPSRTYSGSDENLGVASVGSSGVSAETMRPVGFPGPSSVAGEGVDIVTNSRNSRTDMSNAG-EVNRADVDSTSDDGDRNDRTIICEIRSEMWPSASFIDARA 2145
+A A ++GDVD VR LE G++A++ NP TGRTLLH+ACRQGYP +ASLLLSNGANPGA TLR LTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +ARV+ DSSAKD NG+FPD VIG G+P VDPACA +LSEVV GHR RIK +A++PECPVCQVEVKEAVLDPCRHLA CASCA+SLQSC CSCPVRGY+LLESRQVYER A EDE AG+RAQS RFSRRVRDLVA N LKLDV+R RAE+ V+ AER+GLE+RFLLRTPSP T V++ SI +SV FEGG KP +F LT E STG + D G+ ++ GVV SGGG SA SLDE + V D P D S L G G+ G +S+ S+ EGAN+ SS+ D S T DG+ DA C P+R G S A T A G+ D LD S+R S+S+RP+R S S + +G A + SG +AET P PG +AG + TNS S D+SN+G +V D +S SDDGD + T IC S +WPS+SFI A++
Sbjct: 8 DAVRHAVKDGDVDAVREYLESGVDANLANPNTGRTLLHIACRQGYPAMASLLLSNGANPGATTLRQLTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARVAK---------------------VLLEYGADSSAKDCNGSFPDHVIGAGAPDYVDPACAHELSEVVVGHRRRIK-----------------------------------------------SAVKPECPVCQVEVKEAVLDPCRHLATCASCANSLQSCPLCSCPVRGYRLLESRQVYERISALEDESAGMRAQSLRFSRRVRDLVAENADLKLDVQRTRAELSVVTAERRGLEERFLLRTPSPEPTPPVVESGSIAAGSSVASFEGGGAEKPRGRFTLTSENSTGTSGACDDGI---HRMQRPGVVFSGGGFSA-PSLDEPELAVLDRPRPSDG---SYLSGRPASGEGKGQAGSSSKSSCSELIAEGANS---------SSDGDPSKTTTTVETGVRVDASEGGDGQ-DAGRCFFPDRTVGDGDAAPTPVKATCGMDDQKCERQEELHACTLGTLAELKDGAGGGSESATALATVQAARGSAADDPPGLEDACLDEPTADSHLDXXXXXXXXXXXXXXXXXXXXXXEDSDRVAFSQSVRPTRACSVSVKIVGGACMDCSGSTAETTHPANLPGALFLAGRDGEEDTNSTRSPMDVSNSGNQVVERDTNSASDDGDWSISTSICGDTSGLWPSSSFILAQS 724 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig9.15460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig9.15460.1 >prot_P-lacustris_contig9.15460.1 ID=prot_P-lacustris_contig9.15460.1|Name=mRNA_P-lacustris_contig9.15460.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=715bp MEAVKCEAAFQAAREGDVDGVRACLEGGIEADMVNPRTGRTLLHVACRQGback to top mRNA from alignment at P-lacustris_contig9:220173..224779+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig9.15460.1 ID=mRNA_P-lacustris_contig9.15460.1|Name=mRNA_P-lacustris_contig9.15460.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4607bp|location=Sequence derived from alignment at P-lacustris_contig9:220173..224779+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig9:220173..224779+ >mRNA_P-lacustris_contig9.15460.1 ID=mRNA_P-lacustris_contig9.15460.1|Name=mRNA_P-lacustris_contig9.15460.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4290bp|location=Sequence derived from alignment at P-lacustris_contig9:220173..224779+ (Pleurocladia lacustris SAG_25_93)back to top |