mRNA_P-lacustris_contig1251.1828.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1251.1828.1
Unique NamemRNA_P-lacustris_contig1251.1828.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: A0A6H5JIQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ5_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 1.040e-121
Identity = 236/465 (50.75%), Postives = 288/465 (61.94%), Query Frame = 1
Query:  820 LPGGVQRALRKHRNRKN--FSLDIPEDGAPVPPWKSWKSVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSGSDVLGFIPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGSSAAHCPCLTGLVFGTVPEIGSVDIFRFSLHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFKNKFGFGYGEEQQ---RHTSHGD---NEDVEHGRRSREEP------AFARAS*GSRRCRLVAAA*GDRESRRAGRLDHENVSEGSTITRTT 2172
            + G V ++L  H NRK   F   + EDGAPVP +KSWKSV + L+LGY D+ TD+  V++YY+ DH WWF LG+IF++GPAL A I  LR E  +RRVLVAL LG+L  A+VS   SSYS VL +LRV+EPLYESVPQLMLQL+ LL  WD  G+  L        R+ SI  S  SLAYATTG+VAEQ LS+    A  +SA+ CP LTGLVFG VP   SV ++R   + Q FVW FL YQVLEI ++FI+L LL+LV R +F + L WLWGSR ++LR  L  G+  LR RSQ RLVGMPFMDSVMD L +YD+G   TTVEF  C+ IG     D   Q P  V  +WTYVAA CM GKL L  L +RPFK    FG  +E+Q   R    GD   N DV+ G  SR +         AR   G    R V A      + R  R+ HE +S   T+ R T
Sbjct:   27 VTGEVPKSLLDHPNRKGGAFQFHVTEDGAPVPGYKSWKSVGIQLVLGYADVGTDVDAVVSYYQADHMWWFALGMIFIIGPALFAAIVLLRREHWLRRVLVALQLGMLFGALVSWGTSSYSPVLASLRVMEPLYESVPQLMLQLYGLLLEWDNDGTMWLSR------RLLSILFSCFSLAYATTGLVAEQALSRLAPTADAASAS-CPGLTGLVFGAVPANSSVAVYRSRWNSQKFVWAFLFYQVLEIGAKFISLGLLALVWRAYFFLALFWLWGSRAYVLR-RLIAGEHSLRVRSQFRLVGMPFMDSVMDVLQTYDVGCALTTVEFVFCLTIGNMFYTDEGGQLPTDVGRVWTYVAAVCMVGKLCLGYLIVRPFKRVVRFGTEQEEQTSGRQHGGGDVGGNGDVDPGGSSRADDEGMLGDTRARTGYGDEGSRGVVAL-----ASRGARV-HEGMSLSRTVNRRT 477          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: D7FJQ6_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ6_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 8.000e-80
Identity = 160/377 (42.44%), Postives = 235/377 (62.33%), Query Frame = 1
Query:  826 GGVQRALRKHRNRKNFSLDIPEDGAPVPPWKSWKSVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSGSDVLGFIPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGS-SAAHCPCLTGLVFGTVPEIGSVDI-FRFSLHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPG--QERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFKNK 1944
            GG+  +LR HRN + F   +PE GAP+PPW+S +S++  L+LGYLDLFTDL+TV++Y+++    WF +G+ F+ GPAL A  + LR +   R +  A  LGL+VE ++SV + SYSH LV LRV+EPL++S+P L+LQ H LL        + L        R+ S+ +S+LSLA A+TG+VAE PLSQ   + G     A  P  + + FGTVP  GSV +   F LHPQ+FVW FLLYQ++EI+SR ++L ++++ L  +F  +L WLW SR FI   S+G    +E+LRFR  +R    P MDSV+D + +Y +   FT VE    + +G  +   +E +A    R +++ ++   M GK+ L +  + PFK K
Sbjct:  264 GGIPLSLRNHRNFRRFVFAVPEHGAPIPPWRSKRSLIPALVLGYLDLFTDLATVLSYWRSGLTLWFAIGVAFITGPALCAGAYVLREKTVGRGIAAATQLGLIVEGLISVKEESYSHALVALRVLEPLFQSLPMLLLQTHVLLV-----SEECLAL------RVVSVMVSTLSLAVASTGIVAEHPLSQLRWSRGVKYPTAKLPLASSMFFGTVPFAGSVCVRMGFQLHPQDFVWWFLLYQLMEIISRVLSLGVIAMPLGYYFFCLLAWLWLSRTFIACVSIGDSVVREKLRFRKLIRFAAAPIMDSVIDRVKAYKVSCFFTCVETACFLAVGNALPHADETRASDLTRRVFSVISLLAMGGKIALGTALVVPFKAK 629          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 9.300e-68
Identity = 160/383 (41.78%), Postives = 229/383 (59.79%), Query Frame = 1
Query:  820 LPGGVQRALRKHRNRKNFSLDIPEDGAPVP----PWKSWKSVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSG--SDVLGFIPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGSSAAHCPC---LTGLVFGTVPEIGSVDIFRF-SLHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFK 1938
            L G +   ++K      F   I  +G P+P    P  ++K ++VP+LLGY DL +DL T ++YY+  H  WF LGL+F +GPA+I  +F L      RR LVA  L LL EA++++  + YS VL  +RV+EPL+ESVPQL+LQLHA+L  W  +   S  L +      R+ S+ IS+ SLAYA T + + + LS       G     CPC   LTGLVF  VP  G+  +    ++HP++ VW+ L+Y VLEIV+RF+ LA+L LV+RG+F  VL++LW SR  ++  +    +E L FR  +RLV MPF+DS+MD   ++ +GL  T VEF +C+ + Y V     D  P+  R +   VA+ CM GK+ LA +AI P K
Sbjct:  372 LSGPIPLEVQKLPRFGKFITGIALNGPPLPAVRGPLHAFKVLIVPVLLGYADLASDLYTAVSYYEARHFVWFGLGLVFALGPAVIMSLFCLSGIGWFRRFLVAAQLSLLAEALITLTKADYSPVLALVRVIEPLFESVPQLLLQLHAMLWLWTETSFTSSRLAW------RVVSVCISAASLAYAATDVSSVERLSTCDGGKDGERFRLCPCFPSLTGLVFSRVPAQGTSSLRGLGNVHPRSHVWLCLVYHVLEIVARFVPLAMLLLVVRGWFFFVLVYLWVSRALMVWMA---AREVLGFRFWVRLVAMPFLDSIMDETTAFGIGLGLTLVEFIVCMVV-YHVY--KHDDLPSRARLVLVTVASCCMVGKMCLALVAISPLK 742          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: D8LFI4_ECTSI (Leucine Rich Repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI4_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 8.110e-67
Identity = 158/388 (40.72%), Postives = 227/388 (58.51%), Query Frame = 1
Query:  826 GGVQRALRKHRNRKNFSLDIPEDGAPVP----PWKSWKSVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDR---SGSDVLGFIPGYPFRIFSIAISSLSLAYATTGMVA-EQPLSQHVNAAGGSS----AAHCPCLTGLVFGTVPEIGSVDIFRFS-----LHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFK 1938
            G + + L +H   K F +    DG P+P       + K ++VP+ LGYLDL +DL T ++YY + H +WFVL + F +GPA+I   FFL      RR LVA  L LL+EA+ S A  +YS VL  +RV+EPL+ESVPQL+LQL+A+L  W     S SD+ G       R+ S+ IS++SLAYA T + + E+ L+  ++  GG+        CP +T LVF  VPE G   + R +     +HP+  VW   LY VLEIVSRF+ L +++LVLR +F +VL +LW SR  ++  +   G+  + FR ++R+V MPF+DS++D   ++  GL  T VEF  C+   +  S D+    P   R   T ++  CM GK+ LA LAI P K
Sbjct:  158 GEIPKRLAEHPRFKKFIVGRAMDGPPLPHVNDAGHAVKILIVPVALGYLDLASDLYTAVSYYNSGHLFWFVLVVAFALGPAVIVSAFFLPEFTCGRRFLVATQLSLLLEAVFSAASRTYSPVLALVRVIEPLFESVPQLLLQLYAMLLLWSETSLSNSDLNG-------RVISVCISTVSLAYAATDVSSVERLLNTRLSGEGGTERFRMCPDCPSVTALVFSRVPEKG---VSRLAGRMGWVHPRTHVWFCFLYHVLEIVSRFVPLTMIALVLRKWFFLVLPYLWISRCLVVWAAAYSGEATMGFRFRVRIVAMPFIDSILDGTRAFGAGLVLTLVEFVACIVTYHLFSSDH---LPPHARWTLTIISICCMVGKMRLALLAIIPLK 532          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: A0A6H5JJ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ93_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.120e-66
Identity = 155/383 (40.47%), Postives = 223/383 (58.22%), Query Frame = 1
Query:  820 LPGGVQRALRKHRNRKNFSLDIPEDGAPVP----PWKSWKSVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSG--SDVLGFIPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGSSAAHCPC---LTGLVFGTVPEIGSVDIFRFS-LHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFK 1938
            L G +   L+K  +   F   I  +G P+P    P  ++K ++VP++LGY DL +DL T ++YY+  H  WF LGL F +GPA+I   F L      RR LVA  L LL EA++++  + YS VL  +RV+ PL+ESVPQL+LQLHA+L  W  +   S  L +      R+ S+ IS+ SLAYA T + + + LS       G     CPC   LTG+VF  VP  G+  +     +HP++ VW+ L+Y VLEI +RF+ LA+L  V+RG+F  VL++LW  R  I+  +    +E L FR  +RLV MPF+DS+MD   ++ +GL  T VEF +C+ I +    D+    P+  R +   VA+ CM GK+ LA +AI P K
Sbjct:   25 LSGPIPLELQKLPHFGKFITGIALNGPPLPAVRDPLHAFKILIVPVILGYADLASDLYTAVSYYEAKHFVWFGLGLFFALGPAVIMSAFCLSGVGWFRRFLVATQLSLLAEALITLQKADYSPVLALVRVIGPLFESVPQLLLQLHAMLWLWTETSFASSRLAW------RVVSVCISAASLAYAATDVSSVERLSTCDGGMDGERFRLCPCFPSLTGVVFSRVPAEGTSSLRGVGDVHPRSHVWLCLVYHVLEIFARFVPLAMLVQVVRGWFFFVLVYLWVGRGLIVWMT---AREVLGFRFWVRLVAMPFLDSIMDETTAFGIGLVLTLVEFIVCMVIYHVYMNDD---LPSRARLVLVTVASCCMVGKMCLAWVAISPLK 395          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: A0A6H5KD04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD04_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 4.430e-60
Identity = 145/356 (40.73%), Postives = 209/356 (58.71%), Query Frame = 1
Query:  928 SVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYE------ESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSGSDVLGFIPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGSSAAHCPCLTGLVFGTVPEIGSVDIFRFS-LHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRF------------RSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFK 1938
            +V++ +  GYLDL +DL T ++YY++   +WF L L F +GP +IA +FFL           +RRVLVA  L LLVEA  +VA   ++ +L  +R++E L+ESVPQL+LQL+A L  W     +VL        R+ S+ IS+ SLAY  T + + + L +  +   G     C  LTGL F  VPE GS  +  +  +HP+  VW+ LLY +LEIVSRF+ LA+L+LV+R +F +VL +LW SR  + + +    ++  R             R +++LV MPF+DSVMD  A++ LGL  T VEF +CV I +     N D  P ++R     VA+ CM GKLLLA+LAI P +
Sbjct:   65 TVMLQVFFGYLDLVSDLYTAVSYYESGDSFWFTLVLAFALGPGIIASVFFLTPTIVRVRVPWVRRVLVATQLSLLVEAWRNVAKRRFTPILEVVRLIEALFESVPQLLLQLYAALLLWSSPERNVL--------RLGSVCISAGSLAYNATDLFSAKRLERCSDPLEGGICPCCSWLTGLPFSRVPEKGSSRLNGWGDVHPRTHVWLCLLYHILEIVSRFVPLAMLALVMRKWFFLVLPYLWWSRYAVRKKAAAWTRKSTRETDKARPRKSVTERVRVKLVAMPFLDSVMDGSAAFGLGLVVTLVEFIVCVVIYHLY---NHDDLPTNLRLGLYVVASSCMVGKLLLAALAIFPLR 409          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: A0A6H5K7Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q2_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.530e-52
Identity = 149/394 (37.82%), Postives = 215/394 (54.57%), Query Frame = 1
Query:  826 GGVQRALRKHRNRKNFSLDIPEDGAPVP----PWKSWKSVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDR---SGSDVLGFIPGYPFRIFSIAISSLSLAYATTGMVA-EQPLSQHVNAAGGSSAAH----CPCLTGLVFGTVPEIGSVDIFRFS-----LHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFK-NKFGF 1953
            G + + L +H   K F +    DG P+P       + K ++VP+ LGYLDL +DL T                      P  I   +F  +    RR LVA  L LL+EA+ S A  +YS VL  +RV+EPL+ESVPQL+LQL+A+L  W     S SD+ G       R+ S+ IS++SLAYA T + + E+ L+  ++  GG+  +     CP +TGLVF  VPE G   + R +     +HP+  VW   LY VLEIVSRF+ L +++LVLR +F +VL +LW SR  ++  +   G+  + FR ++R+V MPF+DS++D   ++  GL  T V+F  C+   +  S  +    P   R   T +A  CM GK+ LA LAI P K N+ GF
Sbjct:   87 GEIPKRLAEHPRFKKFIVGRAMDGPPLPHINDTGHAVKILIVPVALGYLDLTSDLYT----------------------PTTIQATYF-EFTCG-RRFLVATQLSLLLEAVFSAASRTYSPVLALVRVIEPLFESVPQLLLQLYAMLLLWSETSLSNSDLNG-------RVISVCISTVSLAYAATDVSSVERLLNTRLSGEGGTERSRMCPDCPFITGLVFSRVPEKG---VSRLAGRMGWVHPRTHVWFCFLYHVLEIVSRFVPLTMIALVLRKWFFLVLPYLWISRCLVVWAAAYWGEATMGFRFRVRIVAMPFIDSILDGTRAFGAGLVLTLVKFVACIVTYHLFSSGH---LPPHARWTLTIIAICCMVGKMRLALLAILPLKANEHGF 443          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: A0A6H5JL60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL60_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.780e-52
Identity = 133/309 (43.04%), Postives = 182/309 (58.90%), Query Frame = 1
Query: 1033 LIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSGSDVLGFIPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGSSAAH------CPCLTGLVFGTVPEIGSVDIFRF-SLHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFK 1938
            L F +GPA+I  +F L      RR LVA  L LL EA  +V    YS VL  +RVVEPL+ESVPQL+LQL+A+L+ W  + S          +R  S+ IS  SLAYA T + + + L   +   GGS          C  LTGLVF  VP  G+  +    ++HP++ VW+  +Y VLEIV+RF+ LA+L LV+RG+FL+VL++LW SR+ ++R +    +E L FR  +RLV MPF+DS+MD   ++  GL  T VEF +CV I Y V     D  P+  R +   VA+ CM GK+ LA + I P K
Sbjct:   13 LFFALGPAVIVALFVLSGVGPFRRFLVATQLSLLAEAWNTVGGQVYSPVLALVRVVEPLFESVPQLLLQLYAMLRLWPETSSSSSRLA----WREVSVCISVASLAYAATDVSSVERL---LTCGGGSDCERFRLGPCCSSLTGLVFSRVPAQGTSSLKGVGNVHPRSHVWLCFVYHVLEIVARFVPLAMLVLVVRGWFLLVLVYLWVSRVLMVRVT----REGLDFRFGVRLVAMPFLDSIMDETTAFGTGLVLTLVEFILCVVI-YHVY--KHDDLPSGARLVLVTVASCCMVGKMCLAWVTISPLK 307          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: A0A6H5K6W6_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.310e-37
Identity = 123/368 (33.42%), Postives = 176/368 (47.83%), Query Frame = 1
Query:  892 DGAPVPPWK----SWKSVVVPLLLGYLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRS---------------------GSDVLGFIPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGSSAAHCPCLTGLVFGTVPEIGSVDIFRFSLHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASL 1920
            DG P+P  +    + K +V+P+ LGY DL +D+ T + Y++ DHP W  LGL F +GPALI  IFFL   +  RRVLVA HL L+ EA  +V D  YS VL  +RVVEPL+ESVPQL+LQL+A+L  W  +                                   + S+ IS  SLAYA T                                   ++ SV+              FL  Q  E VS F++LA+   V+R +  +VLL+LW SR  I+   +   +  L FR ++RLV MPF DS++D    +   L +T +EF +C+ + +  +   +D   AS R   T V   CM G   ++++
Sbjct:   46 DGPPLPQVEDDDHAKKILVLPVSLGYPDLVSDIFTAVFYFRGDHPVWGGLGLAFALGPALITSIFFLSGFQWYRRVLVATHLSLIYEAWTTVGDEQYSPVLALVRVVEPLFESVPQLLLQLYAMLILWTETMLSHGRLVWRXXXXXXXXXXXXXXXXXXXXXXXXXVGSVCISVASLAYAAT-----------------------------------DVSSVE--------------FLATQTGE-VSYFVSLAMFFTVIRKWSSLVLLYLWMSRGVIV--XIWASKTSLDFRFRVRLVAMPFTDSIVDGAVVFRGALVWTLLEFMLCLALYHAYA---QDDLSASARRALTIVVCSCMVGLQTISAM 358          
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Match: A0A6H5JCI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI0_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.560e-35
Identity = 118/355 (33.24%), Postives = 177/355 (49.86%), Query Frame = 1
Query:  955 YLDLFTDLSTVIAYYKNDHPWWFVLGLIFVVGPALIAVIFFLRYEESIRRVLVALHLGLLVEAMVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSGSDVLGFIPGYPFRIFSIAISSLSLAYATTGMV-----AEQPLSQHVNAAGGSSAAHCPCL--------TGLVFGTVPEIGSVDIFRFS-LHPQNFVWVFLLYQVLEIVSRFIALALLSLVLRGFFLIVLLWLWGSRLFIL----------RCSLGPGQERLR-FRSQLRLVGMPFMDSVMDTLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCMTGKLLLASLAIRPFKNK 1944
            YLD+ TD+ T   Y++  H  W  LGL+  + P +I  +FFL     +RR+LV L L +LVEA  +     YS  L  +RVVEPL+E+   L+LQLHA+L  W+        F+   PFR   I++ S S A      V     A  P+    N     S   C C         T L F   P  G +++     +HPQ  VWV  LY ++E+VSRFI LA L L+ R +F+ VL++ W S+  ++          R  L   ++     R ++R+V MPF+DS++    ++ +GL  T +EF +   + Y V P   D+  +  + ++T +AA C    LLLA L +   K +
Sbjct:   19 YLDIGTDIYTSYTYFQPGHVVWGTLGLVIALLPGIIEALFFLSGVGFVRRLLVVLQLSVLVEAFSTATGEVYSRKLGFVRVVEPLFEAALHLLLQLHAILVPWNEEPPSPNTFLA--PFRSVFISVGSQSYAVTDNSSVEGLKAAATPVGDVSNWCSRCSRPSC-CWPTWCPWSGTRLPFSRAPTKGELNLGCLGKMHPQTQVWVCFLYHIVEVVSRFIPLAFLILLTRPWFIGVLVYFWLSQAALVGWMAWQTDDRRSRLNAARDEFSSLRFKVRVVAMPFLDSIISQEEAFVVGLWLTDLEFVVYTTL-YHVYPS--DEVASHDQLVFTIIAAIC----LLLARLVMMSLKKE 363          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1251.1828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JIQ5_9PHAE1.040e-12150.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJQ6_ECTSI8.000e-8042.44Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
D8LBY3_ECTSI9.300e-6841.78Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFI4_ECTSI8.110e-6740.72Leucine Rich Repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JJ93_9PHAE1.120e-6640.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD04_9PHAE4.430e-6040.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Q2_9PHAE1.530e-5237.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL60_9PHAE1.780e-5243.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6W6_9PHAE1.310e-3733.42HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JCI0_9PHAE2.560e-3533.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1251contigP-lacustris_contig1251:39966..43495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue4.1e-42
Seed eggNOG ortholog2880.D8LBY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2645
Cds size915
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1251.1828.1prot_P-lacustris_contig1251.1828.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1251 40553..41467 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.3541577-UTR-P-lacustris_contig1251:39965..405521622815567.3541577-UTR-P-lacustris_contig1251:39965..40552Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1251 39966..40552 -
1693493617.784119-UTR-P-lacustris_contig1251:39965..405521693493617.784119-UTR-P-lacustris_contig1251:39965..40552Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1251 39966..40552 -
1622815567.3818645-UTR-P-lacustris_contig1251:41467..425351622815567.3818645-UTR-P-lacustris_contig1251:41467..42535Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1251 41468..42535 -
1693493617.811089-UTR-P-lacustris_contig1251:41467..425351693493617.811089-UTR-P-lacustris_contig1251:41467..42535Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1251 41468..42535 -
1622815567.3945646-UTR-P-lacustris_contig1251:43420..434951622815567.3945646-UTR-P-lacustris_contig1251:43420..43495Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1251 43421..43495 -
1693493617.8196971-UTR-P-lacustris_contig1251:43420..434951693493617.8196971-UTR-P-lacustris_contig1251:43420..43495Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1251 43421..43495 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.3684-CDS-P-lacustris_contig1251:40552..414671622815567.3684-CDS-P-lacustris_contig1251:40552..41467Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1251 40553..41467 -
1693493617.8017492-CDS-P-lacustris_contig1251:40552..414671693493617.8017492-CDS-P-lacustris_contig1251:40552..41467Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1251 40553..41467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1251.1828.1

>prot_P-lacustris_contig1251.1828.1 ID=prot_P-lacustris_contig1251.1828.1|Name=mRNA_P-lacustris_contig1251.1828.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=305bp
MVSVADSSYSHVLVTLRVVEPLYESVPQLMLQLHALLQHWDRSGSDVLGF
IPGYPFRIFSIAISSLSLAYATTGMVAEQPLSQHVNAAGGSSAAHCPCLT
GLVFGTVPEIGSVDIFRFSLHPQNFVWVFLLYQVLEIVSRFIALALLSLV
LRGFFLIVLLWLWGSRLFILRCSLGPGQERLRFRSQLRLVGMPFMDSVMD
TLASYDLGLTFTTVEFFICVGIGYFVSPDNEDQAPASVRHLWTYVAAGCM
TGKLLLASLAIRPFKNKFGFGYGEEQQRHTSHGDNEDVEHGRRSREEPAF
ARAS*
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mRNA from alignment at P-lacustris_contig1251:39966..43495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1251.1828.1 ID=mRNA_P-lacustris_contig1251.1828.1|Name=mRNA_P-lacustris_contig1251.1828.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3530bp|location=Sequence derived from alignment at P-lacustris_contig1251:39966..43495- (Pleurocladia lacustris SAG_25_93)
CAGGTGTCATCCCTTCGGAGTTTGGAGCCCTCGTCAAGCTGGAGTATCTT GGGCTTTATAGCAATCAGCTCACAGGTATGATCAGTAATTGCTGCTCCTC AATATCGGGAAGTGCCCTCCGCACCAACTGTGCTTGGCCGCCTGTCCCAC CTAGGCGATCCTTTCCTTTGGCCAGTGCCAAACGTTGGTCACGTACCGAG CTGACTCGTGTTGGGTGCCATGGTGCTCGTGCAGGACACATTCCCGCGGC GCTCGAAGCTCTCAGCGAGCTGAAGGATCTTCGTATTTTTGAAAACCGGC TGACGGGTGGGCAACAATTGCCACCGTTGCGGTTCTTGCTCGCATACGCC TGACCAGCACACGTTGCGACTAAATTATCGTCGTTTTTGGTGAGATGGTG GTTTGAACGAACTCTGGCGCGTTTGTGCAGGTGTCATCCCTTCGGAGCTT GGAGCCCTTGTCAAGCTGGAGTATCTTGGGCTTTATAGCAATCAGCTCAC AGGTATGATTAGAATCGCTGCCCCTCAACATCGGAAAGTGCCCTCCGCAC CAACTGTGCTTGGCCGCCTGTCCCACCTAGGCGATCCTTTCCTTTGGCCA GTGTCAAACGTTGGTCACGTACCGAGCTGACTCGTGTTGGGTGCCATGGT GCTCGTGCAGGACACATTCCCGCGGCGCTCGGAGCTCTCAGCGAGCTGAA GAATCTTAGTCTCTTTGAAAACCTGCTTACGAGTGAGCAACGAGTGCCAC CGTTGCGCTTGTCATGCCCTGTCGATCCTGTCTGGCAAGCGTTTTTCCCG CACAAGTTGCTCGTGGAGCTCTCAGCTGCCAAACATTCAGCAGCACCAAC CGTCTTAGGCTGTTCTTCCTCGCATACGCCTGACCAGCACAATTTGGGAC TAAATGATCGATGTTTTTGGTGAGATGGTGGTTTGAACGAACTCTGGCGT GTTTGTGCAGGTGTCATCCCTTCGGAGCTTGGAGCCCTTGTCAAGCTGGA GTATCTTGGGCTTTATAGCAATCAGCTCACAGGTATGATTAGAATCGCTG CCCCTCAACATCGGAAAGTGCCCTCCGCACCAACTGTGCTTGGCCGCCTG TCCCACCTAGGCGATCCTTTCCTTTGGCCAGTGTCAAACGTTGGTCACGT ACCGAGCTGACTCGTGTTGGGTGCCATGGTGCTCGTGCAGGACACATTCC CGCGGCGCTCGGAGCTCTCAGCGAGCTGAAGAATCTTAGTCTCTTTGAAA ACCTGCTTACGAGTGAGCAACGAGTGCCACCGTTGCGCTTGTCATGCCCT GTCGATCCTGTCTGGCAAGCGTTTTTCCCGCACAAGTTGCTCGTGGAGCT CTCAGCTGCCAAACATTCAGCAGCACCAACCGTCTTAGGCTGACGAGGTA ATCACTCAATTTTCGCACACCCTTGAACTCTTAGAGCCACTTTTTCTAAG CCAAGCAGGTGTCTGAATGGCATCAACACCTTCTGTGTCGTAGTGAAGTT CTCTTCAAGGTGGCGCATTTGTTCAGCATCCCGGAGGAGTTGGAAGCCCT CACCGCTCTAAAAGCTAGTAATCTCGGAGGCCATCAGCTCACAGACAACA TGTGTGATTTGTTGTTTCCCCATATGTTGGGAATAGTCGCAAGCTCCCAA GCACGCGCTTGTTGGAGGCGATTCGGCCACGTCTGATCTAATCGTTTCGC CTCCCTTCCAGGCGGAGTTCAAAGGGCTCTCAGGAAACATCGGAACCGGA AGAACTTTTCCCTCGATATCCCGGAAGACGGGGCGCCCGTGCCTCCTTGG AAGTCATGGAAGAGCGTGGTTGTTCCGCTATTGCTCGGGTACCTAGACCT TTTCACTGACTTGTCGACGGTGATAGCTTATTACAAAAACGACCACCCGT GGTGGTTTGTGTTGGGATTGATTTTTGTAGTTGGACCCGCCCTCATCGCT GTCATCTTCTTCCTTCGGTATGAAGAATCGATCAGACGAGTTCTTGTCGC GCTTCACCTAGGGTTGCTGGTGGAAGCTATGGTATCGGTGGCAGACTCGT CATACTCACACGTGCTGGTGACCTTGCGGGTTGTGGAGCCGCTCTACGAA TCAGTCCCGCAGCTTATGCTGCAACTTCACGCTCTGTTGCAACACTGGGA CCGTTCTGGTTCCGACGTTTTGGGCTTCATCCCTGGGTATCCCTTCCGAA TCTTCAGTATTGCGATATCCTCTCTGTCGCTAGCTTATGCCACTACGGGA ATGGTGGCCGAGCAGCCTTTGTCTCAGCACGTCAACGCTGCGGGTGGCTC GAGTGCTGCGCACTGCCCATGTCTTACAGGGCTGGTGTTTGGGACAGTCC CTGAGATCGGTAGTGTAGACATTTTCCGATTTAGCCTACACCCCCAGAAC TTTGTGTGGGTATTCTTGCTGTACCAAGTGTTGGAGATCGTGTCTAGATT CATTGCACTCGCTCTCTTGTCGCTTGTTCTGCGGGGCTTCTTCCTCATCG TGCTTTTGTGGCTATGGGGGTCTCGTCTATTCATTCTACGCTGCTCACTC GGCCCAGGGCAAGAACGGTTGCGCTTTCGATCGCAGCTTCGCCTGGTTGG CATGCCGTTCATGGACTCAGTGATGGACACGCTAGCTTCGTACGACTTGG GGTTGACATTCACAACGGTGGAGTTCTTCATTTGTGTAGGGATCGGCTAT TTCGTATCGCCGGACAATGAGGACCAAGCCCCTGCCAGTGTTCGCCACCT GTGGACATACGTTGCCGCGGGGTGTATGACAGGGAAGCTGTTGTTGGCCA GTCTAGCCATCAGGCCATTCAAGAACAAGTTTGGCTTCGGCTACGGCGAA GAGCAACAGCGGCATACATCTCATGGTGACAATGAAGATGTCGAGCATGG TCGACGTAGCAGGGAGGAGCCGGCTTTCGCCCGGGCGTCGTAAGGCAGCC GTCGATGTCGTTTAGTCGCAGCAGCGTAAGGGGATAGGGAATCGAGGAGA GCAGGACGGTTAGACCACGAGAATGTTTCCGAAGGTTCGACCATCACACG TACAACAGGTGTGAGAGGTACAGGTACAAGTGGGCATCACTGGCACGGTC GCAGATTTCGATACTTTGCGTTTCCTTGGAAAATGTACAGTCCAGCCGGG CGAAGAACGAAAACTCGAAAACCGTGTTGAAAGTCTGAACGGGTCTAGAC TTCTGTAGTTCGGATAGTGACTATGGTGTAGCGGGCGAAGGGCCTGCGGC TGCGATGGTCTGTATTGGATGGTTTTGGGTCGAGATAATTTATAGCGTAA GCTGTAGTCGGACCAAGAAATTAATGTTCTCTGGTTTGGAATGGGCAGGG AATTGATAGGGAAACTCAATTTACGTTTGTCAGTGCAGCGAACCCGCCTT CACCATGAATTGTGCCTTGTCGGAAAAGCTGCGATAGTTTCTCGGACGCC ATCGGGCAGCCAAATCCTACCCAGATGCAGGGTTTTGAGCCTGGGAATGA ACTGCCGACGCAACGTCAACATTCATTTCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1251:39966..43495-

>mRNA_P-lacustris_contig1251.1828.1 ID=mRNA_P-lacustris_contig1251.1828.1|Name=mRNA_P-lacustris_contig1251.1828.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1830bp|location=Sequence derived from alignment at P-lacustris_contig1251:39966..43495- (Pleurocladia lacustris SAG_25_93)
ATGGTATCGGTGGCAGACTCGTCATACTCACACGTGCTGGTGACCTTGCG
GGTTGTGGAGCCGCTCTACGAATCAGTCCCGCAGCTTATGCTGCAACTTC
ACGCTCTGTTGCAACACTGGGACCGTTCTGGTTCCGACGTTTTGGGCTTC
ATCCCTGGGTATCCCTTCCGAATCTTCAGTATTGCGATATCCTCTCTGTC
GCTAGCTTATGCCACTACGGGAATGGTGGCCGAGCAGCCTTTGTCTCAGC
ACGTCAACGCTGCGGGTGGCTCGAGTGCTGCGCACTGCCCATGTCTTACA
GGGCTGGTGTTTGGGACAGTCCCTGAGATCGGTAGTGTAGACATTTTCCG
ATTTAGCCTACACCCCCAGAACTTTGTGTGGGTATTCTTGCTGTACCAAG
TGTTGGAGATCGTGTCTAGATTCATTGCACTCGCTCTCTTGTCGCTTGTT
CTGCGGGGCTTCTTCCTCATCGTGCTTTTGTGGCTATGGGGGTCTCGTCT
ATTCATTCTACGCTGCTCACTCGGCCCAGGGCAAGAACGGTTGCGCTTTC
GATCGCAGCTTCGCCTGGTTGGCATGCCGTTCATGGACTCAGTGATGGAC
ACGCTAGCTTCGTACGACTTGGGGTTGACATTCACAACGGTGGAGTTCTT
CATTTGTGTAGGGATCGGCTATTTCGTATCGCCGGACAATGAGGACCAAG
CCCCTGCCAGTGTTCGCCACCTGTGGACATACGTTGCCGCGGGGTGTATG
ACAGGGAAGCTGTTGTTGGCCAGTCTAGCCATCAGGCCATTCAAGAACAA
GTTTGGCTTCGGCTACGGCGAAGAGCAACAGCGGCATACATCTCATGGTG
ACAATGAAGATGTCGAGCATGGTCGACGTAGCAGGGAGGAGCCGGCTTTC
GCCCGGGCGTCGTAAATGGTATCGGTGGCAGACTCGTCATACTCACACGT
GCTGGTGACCTTGCGGGTTGTGGAGCCGCTCTACGAATCAGTCCCGCAGC
TTATGCTGCAACTTCACGCTCTGTTGCAACACTGGGACCGTTCTGGTTCC
GACGTTTTGGGCTTCATCCCTGGGTATCCCTTCCGAATCTTCAGTATTGC
GATATCCTCTCTGTCGCTAGCTTATGCCACTACGGGAATGGTGGCCGAGC
AGCCTTTGTCTCAGCACGTCAACGCTGCGGGTGGCTCGAGTGCTGCGCAC
TGCCCATGTCTTACAGGGCTGGTGTTTGGGACAGTCCCTGAGATCGGTAG
TGTAGACATTTTCCGATTTAGCCTACACCCCCAGAACTTTGTGTGGGTAT
TCTTGCTGTACCAAGTGTTGGAGATCGTGTCTAGATTCATTGCACTCGCT
CTCTTGTCGCTTGTTCTGCGGGGCTTCTTCCTCATCGTGCTTTTGTGGCT
ATGGGGGTCTCGTCTATTCATTCTACGCTGCTCACTCGGCCCAGGGCAAG
AACGGTTGCGCTTTCGATCGCAGCTTCGCCTGGTTGGCATGCCGTTCATG
GACTCAGTGATGGACACGCTAGCTTCGTACGACTTGGGGTTGACATTCAC
AACGGTGGAGTTCTTCATTTGTGTAGGGATCGGCTATTTCGTATCGCCGG
ACAATGAGGACCAAGCCCCTGCCAGTGTTCGCCACCTGTGGACATACGTT
GCCGCGGGGTGTATGACAGGGAAGCTGTTGTTGGCCAGTCTAGCCATCAG
GCCATTCAAGAACAAGTTTGGCTTCGGCTACGGCGAAGAGCAACAGCGGC
ATACATCTCATGGTGACAATGAAGATGTCGAGCATGGTCGACGTAGCAGG
GAGGAGCCGGCTTTCGCCCGGGCGTCGTAA
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