mRNA_P-lacustris_contig1250.1825.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1250.1825.1
Unique NamemRNA_P-lacustris_contig1250.1825.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5JE39_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE39_9PHAE)

HSP 1 Score: 388 bits (996), Expect = 5.040e-123
Identity = 211/302 (69.87%), Postives = 227/302 (75.17%), Query Frame = 1
Query:  457 DSW----QGKAPGVVRASHPHLRSKNRINEDNEPRLEAFYETWEAYLAETKLTPDRIINTDETSSTPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFGG--RRYVRWTSVRSEASSRSSTGCSRPTH*KMGEESGEARHGWRDCGGMERELHACE*HGGVQRGGLVAGEHGEGHQPTTQQMEATGE 1344
            DSW      + PG+   +  H+   NRIN D+EPRLEAFY TWEAYLAETKLTPDRII TD TSSTPQGTKS KA+VPTGTKVPGAR SNSRENTTVVAS G DGH YNP IIYKGQR QPAWIQDKNGVPD+KYTVTE SFIQSHVFLDYLRDLRE LDARGLQG++ L LDGHASH TFD I+LAISLDID+FQL SHTSHIT PLDVGTFG   ++  R  +                   K+G  S   R        MERELHACE HGGVQRGGLVAGEHGEGHQPTT+Q EATGE
Sbjct:  471 DSWLEGFMARHPGLSERA-THIYEANRINVDDEPRLEAFYGTWEAYLAETKLTPDRIIKTDGTSSTPQGTKSVKAIVPTGTKVPGARRSNSRENTTVVASIGPDGHTYNPIIIYKGQRTQPAWIQDKNGVPDAKYTVTEPSFIQSHVFLDYLRDLREQLDARGLQGRVPLVLDGHASHKTFDAISLAISLDIDLFQLSSHTSHITQPLDVGTFGTFTKKLTRVLTAYPL---------------KIGGRSPVKRDMAGVIADMERELHACEQHGGVQRGGLVAGEHGEGHQPTTRQEEATGE 756          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 1.470e-111
Identity = 201/318 (63.21%), Postives = 231/318 (72.64%), Query Frame = 1
Query:  139 PRRLSMQCAALRS-DVV*GCAADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEVS*NMC*STPPDTFCCWIGGS*KKLCGRSASTDAR-CPGTQTRARGTAGLRDSWQGKAPGVVRASHPHLRSKNRINEDNEPRLEAFYETWEAYLAETKLTPDRIINTDETSSTPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFG 1086
            P +      A+RS ++    AA TYGL   SLH RVK +VAIDARVGPGTVL KEEE             F   +G    +   R+  TD R  P    +  G + L + +  + PG+   +  H+   NRINED EPRL+AFY+ W  YL ETKL P+RI+NTDETSSTPQGTKSGKA+V  GTKVPGAR SNSRENTTVVA+ GADGH ++PTII+KGQRMQPAWIQD NGVPD+KYTVTESSFIQSHVFLDYLRDLR+ LDARGL GK AL LDGHASHTTFD I+L ISLD+D+FQLPSHTSHIT PLDVGTFG
Sbjct:   22 PEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFL-LLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWL-EGFMARHPGLSERA-THIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNSRENTTVVATIGADGHTFHPTIIFKGQRMQPAWIQDNNGVPDAKYTVTESSFIQSHVFLDYLRDLRKQLDARGLLGKAALVLDGHASHTTFDAISLGISLDMDLFQLPSHTSHITQPLDVGTFG 336          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5KK08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK08_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 2.610e-108
Identity = 203/350 (58.00%), Postives = 225/350 (64.29%), Query Frame = 1
Query:  139 PRRLSMQCAALRS-DVV*GCAADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEVS*NMC*STPPDTFCCWIGGS*KKLCGRSASTDARCPGTQTRARGTAGLRDSWQGKAPGVVRASHPHLRSKNRINEDNEPRLEAFYETWEAYLAET-----------KLT----------------------PDRIINTDETSSTPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFG 1086
            P R      A+RS ++    AADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEE             F     G  K+   +      + P    +  G + L + +  + PG+   +  H+   NRINED+EPRLEAFYETWEA LAET           K T                      P      D  SSTP+GT SGKA+V TGTKVPGAR SNSRENTT VAS G DGH +NP  IYKGQRMQPA IQDKNGVPD+ YTVTESSFIQSHVFLDYLRDLRE LD  GLQGK+AL LDGHASHTTFD I+LA SLDID+FQL SHTSHIT PLDVGTFG
Sbjct:    8 PERAQKAIDAVRSGEMSFRVAADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEDFVEDVLMHAFRHFLLLGRGELKEAVRKICLDGRKVPWDPDKGPGDSWL-EGFMARHPGLSERA-THICEANRINEDDEPRLEAFYETWEACLAETSSRRXKQTGSTKTTSLALKPSTRHGKRASRRQAHAGPHHQHGRDRRSSTPRGTTSGKAIVSTGTKVPGARRSNSRENTTAVASIGTDGHTHNPITIYKGQRMQPASIQDKNGVPDATYTVTESSFIQSHVFLDYLRDLREQLDG-GLQGKVALVLDGHASHTTFDGISLATSLDIDLFQLRSHTSHITQPLDVGTFG 354          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5L259_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L259_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 1.010e-98
Identity = 159/199 (79.90%), Postives = 170/199 (85.43%), Query Frame = 1
Query:  505 HLRSKNRINEDNEPRLEAFYETWEAYLAETKLTPDRIINTD-----ETSSTPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFG 1086
            H+   NR+NED+EPRLEAFYETWE YLAE+KLTP   +         + STPQGTK GKA+VPTGTKVPGAR SNSRENTTVVAS GADGH YNP IIYKGQRMQPAWIQDKNG+PD+KYTVTESSFIQSHVFLDY RDL E LDARGLQG IAL LDGHASHTTFD I+LAISLDID+FQLPSHTSHIT PLDVGTFG
Sbjct:   13 HIYEANRMNEDDEPRLEAFYETWEVYLAESKLTPSPPLCATARCELRSCSTPQGTKPGKAIVPTGTKVPGARRSNSRENTTVVASIGADGHTYNPIIIYKGQRMQPAWIQDKNGIPDAKYTVTESSFIQSHVFLDYPRDLCEQLDARGLQGNIALVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLDVGTFG 211          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5JY96_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY96_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 1.790e-93
Identity = 168/309 (54.37%), Postives = 211/309 (68.28%), Query Frame = 1
Query:  196 AADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEVS*NMC*STPPDTFCCW----IGGS*KKLC--GRSASTDA-RCPGTQTRARGTAGLRDSWQGKAPGVVRASHPHLRSKNRINEDNEPRLEAFYETWEAYLAETKLTPDRIINTDET-----SSTPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFG 1086
            AA  YG+N  +L RR+   +A+DARVGP TVL K ++ +           F  +    +  + + LC  GR    D  + PG            D +  + P +   +  H+   NRINE++EPRL+  Y+ W AY+ E KLT DR++NTDET      STPQGTK+GKA    G+KVPG R +NSRENTT+V++ GADGH Y+PTIIYKGQRMQP W+ D NG+P ++YTVTESSFIQS VFL YLR+LRE L+ARGLQGK+AL LDGHASHTTF+ I+LAISLDID+FQLPSHTSH+T PLDVGTFG
Sbjct:   35 AAKAYGVNKDALSRRLSGAMAMDARVGPETVLSKADDYAVEDALIYASRHFLSFGRQQLIDAVRVLCLHGRPVPWDPDKGPGRS--------WLDGFMARHPALSERT-THIYEANRINENDEPRLKDVYKAWGAYVMENKLTADRVLNTDETVEFWQGSTPQGTKAGKAFALKGSKVPGTRRANSRENTTIVSTIGADGHTYDPTIIYKGQRMQPDWVADDNGIPGARYTVTESSFIQSDVFLSYLRNLREQLNARGLQGKVALVLDGHASHTTFEAISLAISLDIDLFQLPSHTSHMTQPLDVGTFG 334          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 2.370e-92
Identity = 179/322 (55.59%), Postives = 209/322 (64.91%), Query Frame = 1
Query:  139 PRRLSMQCAALRS-DVV*GCAADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEVS*NMC*STPPDTFCCWIGGS*KKLCGRSASTDAR-CPGTQTRARGTAGLRDSW----QGKAPGVVRASHPHLRSKNRINEDNEPRLEAFYETWEAYLAETKLTPDRIINTDETSSTPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFG 1086
            P +      A+RS ++    AA TYGL   SLH RVKK+VAIDA+VGPGTVL KE E             F   +G    K   R+  +D R  P    +  G     DSW      + PG+   +  H+   N INED+E RLEAFY+ W  YLAETKL P+ +     +++              GTKVPGAR SNSRENTTVV + GA GH ++PTII+KGQRMQPAWIQD NGVPD+KYT+TE SF QSHVFLDYLRDLR+ LDARGLQGK AL LDGHASHTTFD I+LA+SLDID FQLPSHTSHIT PLDVGTFG
Sbjct:   60 PEQAQKAVDAVRSGEMSLRVAAKTYGLPLASLHDRVKKKVAIDAKVGPGTVLSKEGEDFVEDVLIYASRHFL-LLGRRELKDAVRNICSDGRKVPWNPDKGPG-----DSWLEGVMTRHPGLSERA-THINEANPINEDDERRLEAFYKAWAEYLAETKLPPEXVSAVSVSTAV-------------GTKVPGARRSNSRENTTVVPTIGAGGHTFHPTIIFKGQRMQPAWIQDNNGVPDAKYTITEFSFTQSHVFLDYLRDLRQQLDARGLQGKTALVLDGHASHTTFDAISLALSLDIDAFQLPSHTSHITQPLDVGTFG 361          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5K7A1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A1_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 8.100e-81
Identity = 130/150 (86.67%), Postives = 137/150 (91.33%), Query Frame = 1
Query:  637 STPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFG 1086
            STPQGTK GKA+VPTGTKVPGAR S+SRENTTVVAS GADG  YNP IIYKGQRMQPAWIQDKNGV D+KYTVT SSFIQSHV LDYLRDLRE LDARGLQGK++L LDGHASHTTFD I+LAISLDID+FQLPSHTSHIT PLDVGTFG
Sbjct:   12 STPQGTKWGKAIVPTGTKVPGARRSHSRENTTVVASIGADGQTYNPIIIYKGQRMQPAWIQDKNGVLDAKYTVTGSSFIQSHVLLDYLRDLREQLDARGLQGKVSLVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLDVGTFG 161          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5KM49_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM49_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 1.010e-74
Identity = 124/148 (83.78%), Postives = 133/148 (89.86%), Query Frame = 1
Query:  637 STPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGT 1080
            STPQGT+SGKA+VPTGTKVPGAR SNSREN TVVA  GADG  YNP IIY+GQRM PA IQDKNGVPD+KYTVTESSFIQS VFLDYLRDLRE LDARGLQGK+AL LDGHASHTTFD ++L ISLDID+FQLPSHTSHIT PL+VGT
Sbjct:   12 STPQGTRSGKAIVPTGTKVPGARRSNSRENATVVACIGADGQSYNPIIIYQGQRMHPACIQDKNGVPDAKYTVTESSFIQSDVFLDYLRDLREQLDARGLQGKVALVLDGHASHTTFDAVSLVISLDIDLFQLPSHTSHITQPLNVGT 159          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5KJ81_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ81_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.460e-74
Identity = 127/150 (84.67%), Postives = 135/150 (90.00%), Query Frame = 1
Query:  637 STPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFG 1086
            STPQ TKS KA+VP GTKVPGAR +NSRENTTVVAS GADGH YNP IIYKGQRMQPAWIQDKNGVPD+KYT TESSFIQSHVFL YLRDLRE LD+RGLQGK+AL LDGHASHTTFD I+LAISLDI++FQLP HT HIT PLDVGTFG
Sbjct:   12 STPQRTKSEKAIVPGGTKVPGARRTNSRENTTVVASIGADGHNYNPFIIYKGQRMQPAWIQDKNGVPDAKYTDTESSFIQSHVFLGYLRDLREQLDSRGLQGKVALVLDGHASHTTFDAISLAISLDINLFQLPFHTPHITQPLDVGTFG 161          
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Match: A0A6H5J6D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6D5_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.540e-69
Identity = 124/151 (82.12%), Postives = 132/151 (87.42%), Query Frame = 1
Query:  640 TPQGTKSGKAVVPTGTKVPGARCSNSRENTTVVASTGADGHIYNPTIIYKGQRMQPAWIQDKNGVPDSKYTVTESSFIQSHVFLDYLRDLREHLDARGLQGKIALALDGHASHTTFDDITLAISLDIDVFQLPSHTSHITHPLDVGTFGGR 1092
            TPQGTKSGKA+VPTGTKVPGAR S SRENTTVVAS GADG  YNP IIYKGQRMQP WIQDKNGVPD+KYTVTESSF++SHVFLDYL+DLRE LDARGLQ  +AL LD HASHTTF  I+LAISLDID+FQLPSHTSHIT PLDV   G R
Sbjct:   91 TPQGTKSGKAIVPTGTKVPGARRSTSRENTTVVASIGADGPTYNPIIIYKGQRMQPVWIQDKNGVPDAKYTVTESSFVRSHVFLDYLQDLREQLDARGLQ--VALVLDDHASHTTFHAISLAISLDIDLFQLPSHTSHITQPLDVARHGWR 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1250.1825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE39_9PHAE5.040e-12369.87DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L1T0_9PHAE1.470e-11163.21Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK08_9PHAE2.610e-10858.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L259_9PHAE1.010e-9879.90DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JY96_9PHAE1.790e-9354.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK8_9PHAE2.370e-9255.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7A1_9PHAE8.100e-8186.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KM49_9PHAE1.010e-7483.78DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KJ81_9PHAE1.460e-7484.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J6D5_9PHAE1.540e-6982.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1250contigP-lacustris_contig1250:49299..51655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog2880.D8LN28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CZS4@1,2SBGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1644
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1250.1825.1prot_P-lacustris_contig1250.1825.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1250 50838..51554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.9827304-UTR-P-lacustris_contig1250:49298..499321622815566.9827304-UTR-P-lacustris_contig1250:49298..49932Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 49299..49932 +
1693493617.4989119-UTR-P-lacustris_contig1250:49298..499321693493617.4989119-UTR-P-lacustris_contig1250:49298..49932Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 49299..49932 +
1622815566.9962275-UTR-P-lacustris_contig1250:50645..508371622815566.9962275-UTR-P-lacustris_contig1250:50645..50837Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 50646..50837 +
1693493617.5089343-UTR-P-lacustris_contig1250:50645..508371693493617.5089343-UTR-P-lacustris_contig1250:50645..50837Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 50646..50837 +
1622815567.0260499-UTR-P-lacustris_contig1250:51554..516551622815567.0260499-UTR-P-lacustris_contig1250:51554..51655Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 51555..51655 +
1693493617.5305874-UTR-P-lacustris_contig1250:51554..516551693493617.5305874-UTR-P-lacustris_contig1250:51554..51655Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 51555..51655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.0139775-CDS-P-lacustris_contig1250:50837..515541622815567.0139775-CDS-P-lacustris_contig1250:50837..51554Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 50838..51554 +
1693493617.517702-CDS-P-lacustris_contig1250:50837..515541693493617.517702-CDS-P-lacustris_contig1250:50837..51554Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 50838..51554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1250.1825.1

>prot_P-lacustris_contig1250.1825.1 ID=prot_P-lacustris_contig1250.1825.1|Name=mRNA_P-lacustris_contig1250.1825.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=239bp
MASPIRSTPSRSHPSSRATCSSTTFETSANISMRAACRAKLPLRSTATPR
TRPSTTSPWPSPWTSTSSSSRPTHRISPIPWTSVRSVDVGTFGGRRYVRK
LQAGAQQGAHGLPTEKWGRSPVKRDMAGVIAEAWRGSFTPANNMAVFKGA
GLWRVNMEKAINRLHSKWRQRENDRPIPEDLAVVASKKQLEQDLGHAALL
ELKRQGVMIEGLRVNTVFLDGLTLGGNVMWQLSLTRLH*
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mRNA from alignment at P-lacustris_contig1250:49299..51655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1250.1825.1 ID=mRNA_P-lacustris_contig1250.1825.1|Name=mRNA_P-lacustris_contig1250.1825.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2357bp|location=Sequence derived from alignment at P-lacustris_contig1250:49299..51655+ (Pleurocladia lacustris SAG_25_93)
CACTTCAGCGTGCCGATTGGGTCAAGCACTGCCGAGCTACAGCACAATCC CTACCCACACCCCTGATGTGGGCCATATTTTCCCTTGCTGGGGTCCTGCT GCTAAGCATGGGATGAGCGAGAGTAGACCCAGAGCGGGCCCAGAAGGCTG TCGATGCAGTGCGCAGCGTTGAGATCAGATGTCGTGTAGGGTTGTGCTGC GGACACCTACGGGTTGAACCCGACCTCGCTCCACCGCCGTGTGAAGAAGG AGGTGGCCATTGATGCTAGGGTTGGTCCCGGGACTGTCCTGTGCAAGGAG GAGGAAGTTTCGTAGAATATGTGTTGATCTACGCCTCCCGACACTTTTTG CTGTTGGATCGGAGGGAGCTGAAAGAAGCTGTGCGGAAGATCTGCCTCGA CGGACGCAAGGTGCCCTGGGACCCAGACAAGGGCCCGGGGGACAGCTGGC TTGAGGGATTCATGGCAAGGCAAGGCACCCGGGGTTGTCCGAGCGAGCCA CCCACATCTACGGAGCAAAAACCGGATCAACGAAGACAACGAGCCTCGCC TTGAAGCCTTCTACGAGACATGGGAAGCGTACCTCGCGGAGACCAAGCTC ACGCCGGACCGCATCATCAACACGGACGAGACAAGTGCGTTAGGGCAAGG GCTAAGGTGTCAGTGGTGTCAGTATCGACTGCTGTGGGTTCGTAGGCGAA GTACCAGCAGCACTGCGATGTGCGATGTGTGTCACAACAAAGCTGCTGCT GCTGCTGCGAAAAAAAAAAAACCCAGCAGTTGTTCTGCATATCTTTCCGA GGCCGCTGCTGCTTGCCATGCTTGTAGCACACCACGCGCATGTGATGCTG GATCTGGTTGAGGGTTCAGCATGCAACAATCCCTGTGGTAATCTCAGATA TACTCTAGCACAGAAATGATAGGGCTCATGCACGATATTCTACACGGTGT TTTTGTTTTGTGCCACACGCGACAGCGGGCGTGTGCGGTGTTGGTCCGCA TGCACGTGTGTTGCCAATGCTGCGCGAAGTGCAGTCAAGTCGAGACTTCA GTAGGACGCTTTGCTTTGTAAACCCACCTTGGTTTCGAGCTCAATGTAAA CTGTCATGGGTGTGGGGTTGTTGATTCACACCCAAAGTCTAAACGAATCC GACTGCCGTTGAAGAAAAAAAAATGGTCCCGTCACAACCGCTTTGTGCCA CCGCCCGGTGCGAGCAGCGCTCATGTGTGTGTGTACGCGCGTTTTTTTGT GTGTGCGAGCGCTGCTGCTGCAAAAATATGTGTACTTTACTGATTGCTCG ACTGCCTCCACCCCCGATGCACGCGCGTTCTCCGGTGTGTGTTGTAGGTT CCACCCCGCAGGGTACAAAGTCGGGGAAGGCTGTCGTGCCAACAGGCACC AAGGTGCCCGGCGCGAGGTGCTCCAACTCGCGAGAAAATACGACGGTGGT CGCCAGCACCGGCGCTGACGGCCACATCTACAACCCTACCATCATCTACA AAGGCCAGCGTATGCAACCCGCTTGGATCCAGGACAAAAATGGCGTCCCC GATTCGAAGTACACCGTCACGGAGTCATCCTTCATCCAGAGCCACGTGTT CCTCGACTACCTTCGAGACCTCCGCGAACATCTCGATGCGCGCGGCTTGC AGGGCAAAATTGCCCTTGCGCTCGACGGCCACGCCTCGCACACGACCTTC GACGACATCACCTTGGCCATCTCCCTGGACATCGACGTCTTCCAGCTCCC GTCCCACACATCGCATATCACCCATCCCTTGGACGTCGGTACGTTCGGTG GACGTCGGTACGTTCGGTGGACGTCGGTACGTTCGGAAGCTTCAAGCAGG AGCTCAACAGGGTGCTCACGGCCTACCCACTGAAAAATGGGGGAGGAGTC CGGTGAAGCGCGACATGGCTGGCGTGATTGCGGAGGCATGGAGAGGGAGC TTCACGCCTGCGAATAACATGGCGGTGTTCAAAGGGGCGGGCTTGTGGCG GGTGAACATGGAGAAGGCCATCAACCGACTACACAGCAAATGGAGGCAAC GGGAGAATGACCGCCCTATCCCTGAAGACCTCGCCGTCGTTGCCTCCAAG AAGCAGCTCGAACAAGATCTCGGCCACGCTGCCCTCCTGGAGCTGAAACG ACAGGGAGTGATGATCGAGGGGCTCCGCGTCAACACCGTGTTCCTCGACG GGCTCACTCTTGGAGGAAATGTGATGTGGCAACTGTCCTTGACAAGGTTG CACTGAGGCTCAGCGTGACTGTTAAGTTCACTTGACCAGAGTAGAGACAA GATGAGTTGAATTGGCGCTTAGATGGCCTGAATAAGAATTGGTGGAAGAG TGAACAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1250:49299..51655+

>mRNA_P-lacustris_contig1250.1825.1 ID=mRNA_P-lacustris_contig1250.1825.1|Name=mRNA_P-lacustris_contig1250.1825.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1434bp|location=Sequence derived from alignment at P-lacustris_contig1250:49299..51655+ (Pleurocladia lacustris SAG_25_93)
ATGGCGTCCCCGATTCGAAGTACACCGTCACGGAGTCATCCTTCATCCAG
AGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGCGAACATCTCGATGC
GCGCGGCTTGCAGGGCAAAATTGCCCTTGCGCTCGACGGCCACGCCTCGC
ACACGACCTTCGACGACATCACCTTGGCCATCTCCCTGGACATCGACGTC
TTCCAGCTCCCGTCCCACACATCGCATATCACCCATCCCTTGGACGTCGG
TACGTTCGGTGGACGTCGGTACGTTCGGTGGACGTCGGTACGTTCGGAAG
CTTCAAGCAGGAGCTCAACAGGGTGCTCACGGCCTACCCACTGAAAAATG
GGGGAGGAGTCCGGTGAAGCGCGACATGGCTGGCGTGATTGCGGAGGCAT
GGAGAGGGAGCTTCACGCCTGCGAATAACATGGCGGTGTTCAAAGGGGCG
GGCTTGTGGCGGGTGAACATGGAGAAGGCCATCAACCGACTACACAGCAA
ATGGAGGCAACGGGAGAATGACCGCCCTATCCCTGAAGACCTCGCCGTCG
TTGCCTCCAAGAAGCAGCTCGAACAAGATCTCGGCCACGCTGCCCTCCTG
GAGCTGAAACGACAGGGAGTGATGATCGAGGGGCTCCGCGTCAACACCGT
GTTCCTCGACGGGCTCACTCTTGGAGGAAATGTGATGTGGCAACTGTCCT
TGACAAGGTTGCACTGAATGGCGTCCCCGATTCGAAGTACACCGTCACGG
AGTCATCCTTCATCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACCTC
CGCGAACATCTCGATGCGCGCGGCTTGCAGGGCAAAATTGCCCTTGCGCT
CGACGGCCACGCCTCGCACACGACCTTCGACGACATCACCTTGGCCATCT
CCCTGGACATCGACGTCTTCCAGCTCCCGTCCCACACATCGCATATCACC
CATCCCTTGGACGTCGGTACGTTCGGTGGACGTCGGTACGTTCGGTGGAC
GTCGGTACGTTCGGAAGCTTCAAGCAGGAGCTCAACAGGGTGCTCACGGC
CTACCCACTGAAAAATGGGGGAGGAGTCCGGTGAAGCGCGACATGGCTGG
CGTGATTGCGGAGGCATGGAGAGGGAGCTTCACGCCTGCGAATAACATGG
CGGTGTTCAAAGGGGCGGGCTTGTGGCGGGTGAACATGGAGAAGGCCATC
AACCGACTACACAGCAAATGGAGGCAACGGGAGAATGACCGCCCTATCCC
TGAAGACCTCGCCGTCGTTGCCTCCAAGAAGCAGCTCGAACAAGATCTCG
GCCACGCTGCCCTCCTGGAGCTGAAACGACAGGGAGTGATGATCGAGGGG
CTCCGCGTCAACACCGTGTTCCTCGACGGGCTCACTCTTGGAGGAAATGT
GATGTGGCAACTGTCCTTGACAAGGTTGCACTGA
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