mRNA_P-lacustris_contig1250.1823.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1250.1823.1
Unique NamemRNA_P-lacustris_contig1250.1823.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1250.1823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1250contigP-lacustris_contig1250:44893..45468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size578
Cds size537
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.5592978-UTR-P-lacustris_contig1250:44892..449311622815566.5592978-UTR-P-lacustris_contig1250:44892..44931Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 44893..44931 +
1693493617.1961205-UTR-P-lacustris_contig1250:44892..449311693493617.1961205-UTR-P-lacustris_contig1250:44892..44931Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 44893..44931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.569809-CDS-P-lacustris_contig1250:44931..454681622815566.569809-CDS-P-lacustris_contig1250:44931..45468Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 44932..45468 +
1693493617.2076983-CDS-P-lacustris_contig1250:44931..454681693493617.2076983-CDS-P-lacustris_contig1250:44931..45468Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 44932..45468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1250.1823.1prot_P-lacustris_contig1250.1823.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1250 44932..45468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1250.1823.1

>prot_P-lacustris_contig1250.1823.1 ID=prot_P-lacustris_contig1250.1823.1|Name=mRNA_P-lacustris_contig1250.1823.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=179bp
MLLHRHGVVDGLHLTQEKNLRSGNAVWPRNHTRNRKKGGTANKPACKAKR
EHCGAWTKSPDSRNRRLPRAKRRLGQNAGIVETHTNRRVERYVCLNTYIW
FHFPEIYNGFGREDDGRCSISFEDNRFGVIADLLLHRSAKNLPFFTTDTK
SHHRATAPDYSAQRACLEALPRSAAALSP
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mRNA from alignment at P-lacustris_contig1250:44893..45468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1250.1823.1 ID=mRNA_P-lacustris_contig1250.1823.1|Name=mRNA_P-lacustris_contig1250.1823.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=576bp|location=Sequence derived from alignment at P-lacustris_contig1250:44893..45468+ (Pleurocladia lacustris SAG_25_93)
GATCTGACTTGCTGACGAGCGAAGGACGCCACGAAGCAAATGTTGCTGCA
CCGACATGGCGTTGTTGACGGTTTACACTTGACCCAAGAAAAAAATTTAA
GGTCAGGGAATGCGGTTTGGCCACGAAACCACACAAGAAATCGAAAAAAA
GGCGGGACGGCAAACAAGCCAGCTTGTAAAGCCAAGCGCGAACATTGCGG
GGCGTGGACAAAAAGTCCTGACTCGCGAAATCGTCGGCTGCCACGTGCAA
AAAGACGGCTGGGACAAAATGCAGGGATCGTCGAGACGCACACGAATAGA
AGAGTGGAACGCTACGTATGCCTGAACACATATATTTGGTTTCATTTTCC
CGAAATCTACAATGGATTTGGCCGTGAGGACGATGGTCGCTGCTCGATTT
CATTCGAAGATAATCGCTTCGGAGTAATCGCTGACCTGTTGCTTCATCGT
AGCGCAAAAAATCTCCCATTTTTTACAACAGATACCAAAAGTCATCACAG
GGCTACTGCCCCAGATTATTCAGCTCAAAGGGCATGCTTAGAAGCTCTAC
CACGGAGCGCTGCAGCCTTGTCGCCA
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Coding sequence (CDS) from alignment at P-lacustris_contig1250:44893..45468+

>mRNA_P-lacustris_contig1250.1823.1 ID=mRNA_P-lacustris_contig1250.1823.1|Name=mRNA_P-lacustris_contig1250.1823.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1074bp|location=Sequence derived from alignment at P-lacustris_contig1250:44893..45468+ (Pleurocladia lacustris SAG_25_93)
ATGTTGCTGCACCGACATGGCGTTGTTGACGGTTTACACTTGACCCAAGA
AAAAAATTTAAGGTCAGGGAATGCGGTTTGGCCACGAAACCACACAAGAA
ATCGAAAAAAAGGCGGGACGGCAAACAAGCCAGCTTGTAAAGCCAAGCGC
GAACATTGCGGGGCGTGGACAAAAAGTCCTGACTCGCGAAATCGTCGGCT
GCCACGTGCAAAAAGACGGCTGGGACAAAATGCAGGGATCGTCGAGACGC
ACACGAATAGAAGAGTGGAACGCTACGTATGCCTGAACACATATATTTGG
TTTCATTTTCCCGAAATCTACAATGGATTTGGCCGTGAGGACGATGGTCG
CTGCTCGATTTCATTCGAAGATAATCGCTTCGGAGTAATCGCTGACCTGT
TGCTTCATCGTAGCGCAAAAAATCTCCCATTTTTTACAACAGATACCAAA
AGTCATCACAGGGCTACTGCCCCAGATTATTCAGCTCAAAGGGCATGCTT
AGAAGCTCTACCACGGAGCGCTGCAGCCTTGTCGCCAATGTTGCTGCACC
GACATGGCGTTGTTGACGGTTTACACTTGACCCAAGAAAAAAATTTAAGG
TCAGGGAATGCGGTTTGGCCACGAAACCACACAAGAAATCGAAAAAAAGG
CGGGACGGCAAACAAGCCAGCTTGTAAAGCCAAGCGCGAACATTGCGGGG
CGTGGACAAAAAGTCCTGACTCGCGAAATCGTCGGCTGCCACGTGCAAAA
AGACGGCTGGGACAAAATGCAGGGATCGTCGAGACGCACACGAATAGAAG
AGTGGAACGCTACGTATGCCTGAACACATATATTTGGTTTCATTTTCCCG
AAATCTACAATGGATTTGGCCGTGAGGACGATGGTCGCTGCTCGATTTCA
TTCGAAGATAATCGCTTCGGAGTAATCGCTGACCTGTTGCTTCATCGTAG
CGCAAAAAATCTCCCATTTTTTACAACAGATACCAAAAGTCATCACAGGG
CTACTGCCCCAGATTATTCAGCTCAAAGGGCATGCTTAGAAGCTCTACCA
CGGAGCGCTGCAGCCTTGTCGCCA
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