mRNA_P-lacustris_contig1250.1822.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1250.1822.1
Unique NamemRNA_P-lacustris_contig1250.1822.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 379 bits (974), Expect = 2.690e-115
Identity = 219/297 (73.74%), Postives = 234/297 (78.79%), Query Frame = 3 
Query:    3 CSVSLSSTLAASNESLDRNGVRWLGEEAESALSGRTPTTAEWIQLVMATSEPIAIIEIDE----LVTEEQAARSVLVQGLPILDRRPTESSVVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGAICSVRLSSTLAASNERFDRDNVHWMA--------------------------CTVATVDDDGRIMAEVGKLHGVTEQEAVRSVVVQGLPVLDLQRTESLSSLEEVFLAYGRIGKLLLQTIHQSQTQRAVVVFKQSAGATAALHQNGRDILGASCS 803
            CSVSLSSTLAASNESLD+NGVRWL E AE+AL+GRTPTTAEWIQLVM ++    +  +D+    LVTEEQAARSVLVQGLPILDR+ TE S+VEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGA CSV LSSTLA SNERFDR NVHWM                           CTVATVDDDG I+AE  +L  VTEQEA RSV+VQGLPVLDLQ TE+  +L EVF  YGR  KLLLQTIHQSQTQR VVVFKQSAGATAAL QNGRDILGA CS
Sbjct:   89 CSVSLSSTLAASNESLDQNGVRWLAERAENALNGRTPTTAEWIQLVMDSTPESTMATLDDDGIQLVTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNVHWMGEAEGALSGGTPTTAEWIQLIFEHIPTCTVATVDDDGNIIAESDELPEVTEQEAARSVLVQGLPVLDLQPTEA--ALVEVFSVYGRASKLLLQTIHQSQTQRVVVVFKQSAGATAALQQNGRDILGARCS 383
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.080e-27
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = 3 
Query:  171 EIDELVTEEQAARSVLVQGLPILDRRPTESSVVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGAICSVRLSSTLAASNERFDRDNVHWMACTVATVDDDGRIMAEVGKLHGVTEQEAV 578
            +++  VT+ +A RS+LVQGLP+LD+  TESS+V+VFS YG +S+LLLQT   S+TQRA++VFA+ AGAT+ALQ N RDILGA CSV L+S++ A N+  DRDNV      V  +  +GR +     + G+  Q  V
Sbjct:   19 DLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGM--EGRTLTTAEWIKGIFAQGMV 152
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5L610_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L610_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.720e-21
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHIDIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            +HLA+NP TTPNSKHIDIRHHF+RERVARG+F+V H+ S LQ ADFLTKPL KE   A+R+FVM +
Sbjct:   65 IHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 130
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.180e-20
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHIDIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            LHLANNP TTPNSKHID+RHHF+RERV RG+F+V ++PS LQHADFLTKPL KE    +RNFVM L
Sbjct:  280 LHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.090e-20
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHIDIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            +HLA+NP TTPNSKHIDIRHHF+RERVARG+F+V H+ S LQ ADFLTKPL KE   A+R+FVM +
Sbjct:  111 IHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 176
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5KG18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG18_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.050e-19
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHI-DIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            LHLANNP TTPNSKHI DIRHHF+RERV RG+F+V  +PS LQHADFLTKPLHKE    +RNFVM L
Sbjct:  348 LHLANNPATTPNSKHIIDIRHHFIRERVDRGEFKVVFVPSHLQHADFLTKPLHKEAFSVHRNFVMNL 414
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.520e-19
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHIDIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            LHLANNP TTPNSKHID+RHHF+RERV RG+F+V ++PS LQHADFLTKPL KE    +RNFVM L
Sbjct: 1048 LHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5L3I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 6.820e-19
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHIDIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            +HLA+NP TTPNSKHIDIRHHF+RER+ARG+F+V H+ S LQ ADFLTKPL KE   A R+FVM +
Sbjct:  206 IHLASNPATTPNSKHIDIRHHFIRERLARGEFKVVHVRSDLQRADFLTKPLPKETFCAQRDFVMNI 271
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5KHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.980e-18
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHIDIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            +HLA+NP TTPNSKHIDIRHHF+RERVARG+F+V H+ S LQ ADFLTKPL KE   A+R+FVM +
Sbjct:  349 IHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 414
[Close]
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.300e-18
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 3 
Query: 1449 LHLANNPVTTPNSKHIDIRHHFLRERVARGKFRVEHIPSKLQHADFLTKPLHKEKCFANRNFVMKL 1646
            +HLA+NP TTPNSKHIDIRHHF+RERVARG+F+V H+ S LQ ADFLTKPL KE   A+R+FVM +
Sbjct:  497 IHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 562
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1250.1822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE69_9PHAE2.690e-11573.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G7Z1_ECTSI2.080e-2750.74RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5L610_9PHAE5.720e-2171.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Q2_9PHAE1.180e-2074.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZC8_9PHAE2.090e-2071.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG18_9PHAE1.050e-1976.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE3.520e-1974.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3I3_9PHAE6.820e-1969.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN8_9PHAE1.980e-1871.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5L3_9PHAE6.300e-1871.21Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1250contigP-lacustris_contig1250:39779..44380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size3459
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1250.1822.1prot_P-lacustris_contig1250.1822.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1250 42998..44240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.8801866-UTR-P-lacustris_contig1250:39778..422161622815566.8801866-UTR-P-lacustris_contig1250:39778..42216Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 39779..42216 -
1693493617.4314785-UTR-P-lacustris_contig1250:39778..422161693493617.4314785-UTR-P-lacustris_contig1250:39778..42216Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 39779..42216 -
1622815566.893269-UTR-P-lacustris_contig1250:42857..429971622815566.893269-UTR-P-lacustris_contig1250:42857..42997Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 42858..42997 -
1693493617.4423962-UTR-P-lacustris_contig1250:42857..429971693493617.4423962-UTR-P-lacustris_contig1250:42857..42997Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 42858..42997 -
1622815566.9447184-UTR-P-lacustris_contig1250:44240..443801622815566.9447184-UTR-P-lacustris_contig1250:44240..44380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 44241..44380 -
1693493617.488342-UTR-P-lacustris_contig1250:44240..443801693493617.488342-UTR-P-lacustris_contig1250:44240..44380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1250 44241..44380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.9063325-CDS-P-lacustris_contig1250:42997..430751622815566.9063325-CDS-P-lacustris_contig1250:42997..43075Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 42998..43075 -
1693493617.454053-CDS-P-lacustris_contig1250:42997..430751693493617.454053-CDS-P-lacustris_contig1250:42997..43075Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 42998..43075 -
1622815566.9223173-CDS-P-lacustris_contig1250:43499..438101622815566.9223173-CDS-P-lacustris_contig1250:43499..43810Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 43500..43810 -
1693493617.4632876-CDS-P-lacustris_contig1250:43499..438101693493617.4632876-CDS-P-lacustris_contig1250:43499..43810Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 43500..43810 -
1622815566.9346538-CDS-P-lacustris_contig1250:43888..442401622815566.9346538-CDS-P-lacustris_contig1250:43888..44240Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 43889..44240 -
1693493617.4726102-CDS-P-lacustris_contig1250:43888..442401693493617.4726102-CDS-P-lacustris_contig1250:43888..44240Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1250 43889..44240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1250.1822.1

>prot_P-lacustris_contig1250.1822.1 ID=prot_P-lacustris_contig1250.1822.1|Name=mRNA_P-lacustris_contig1250.1822.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=247bp
MATSEPIAIIEIDELVTEEQAARSVLVQGLPILDRRPTESSVVEVFSVYG
RVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGAICSVRLSS
TLAASNERFDRDNVHWMACTVATVDDDGRIMAEVGKLHGVTEQEAVRSVV
VQGLPVLDLQRTESLSSLEEVFLAYGRIGKLLLQTIHQSQTQRAVVVFKQ
SAGATAALHQNGRDILGASCSRAPVVHASRFEREVRPRQRSLDGRS*
back to top

mRNA from alignment at P-lacustris_contig1250:39779..44380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1250.1822.1 ID=mRNA_P-lacustris_contig1250.1822.1|Name=mRNA_P-lacustris_contig1250.1822.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4602bp|location=Sequence derived from alignment at P-lacustris_contig1250:39779..44380- (Pleurocladia lacustris SAG_25_93)
GCTGCAGCGTGAGTCTGTCGTCCACGCTAGCCGCTTCGAATGAGAGCTTG
GACCGCAACGGAGTTCGCTGGCTAGGCGAAGAAGCCGAGAGTGCACTCAG
CGGGCGCACCCCGACAACGGCTGAGTGGATCCAACTCGTCATGGCGACCT
CGGAGCCCATCGCGATCATCGAGATTGACGAACTTGTGACGGAGGAGCAA
GCGGCCCGGTCAGTCCTCGTGCAAGGGTTGCCGATCCTCGATCGACGGCC
GACGGAATCTTCCGTGGTGGAGGTTTTCTCGGTGTACGGACGAGTCTCCA
GGCTTCTCCTGCAGACGATCCGATTGAGCCAGACCCAGAGGGCTCTCGTG
GTGTTCGCAGAATCGGCGGGGGCTACCGCGGCTCTGCAGCAGAACGACCG
CGACATCCTCGGCGCGATCTGCAGCGTGCGCCTGTCGTCCACGCTAGCCG
CTTCGAACGAGAGGTTCGACCGCGACAACGTTCACTGGATGGGCGAAGCT
GAGGGTGCACTAAGCGGGCGCACCCCGACAACGGCTGAGTGGATCCAGCT
CATCTTCGAGCACATCCCTACGTGCACCGTGGCGACCGTTGATGATGACG
GGAGAATTATGGCGGAGGTCGGCAAGCTACACGGCGTGACGGAGCAAGAA
GCGGTCCGGTCGGTCGTCGTGCAAGGGCTGCCTGTCCTTGATCTACAGCG
GACGGAATCTTTATCTTCTCTTGAGGAGGTATTCTTGGCGTACGGACGCA
TCGGCAAGCTCCTCCTGCAGACAATCCATCAGAGCCAGACCCAGAGGGCT
GTCGTGGTTTTCAAACAATCGGCGGGTGCCACCGCGGCTCTCCATCAGAA
CGGCCGCGATATCCTCGGCGCGAGCTGCAGCGTGAGCCTGTCGTCCACGC
TAGCCGCTTCGAATGAGAGCTTGGACCGCAACGGAGTTCGCTGGCTAGGC
GAAGAAGCCGAGAGTGCACTCAGCGGGCGCACCCCGACAACGGCTGAGTG
GATCCAACTCGTCATGGCGACCCCGGAGTCCAGCATGGCGACCATCGAGG
ATGACGGGATTCAACTTGTGACGGAGGAGCAAGCGGCCCGGTCAGTCCTC
GTGCAAGGGTTGCCGATCCTCGATCGACGGCCGACGGAATCTTCCGTGGT
GGAGGTTTTCTCGGTGTACGGACGAGTCTCCAGGCTTCTCCTGCAGACGA
TCCGATTGAGCCAGACCCAGAGGGCTCTCGTGGTGTTCGCAGAATCGGCG
GGGCTACCGCGGCTCTGCAGCAGAACGACCGCGACATCCTCGGCGCGATC
TGCAGCGTGCGCCTGTCGTCCACGCTAGCCGCTTCGAACGAGAGGTTCGA
CCGCGACAACGTTCACTGGATGGGCGAAGCTGAGGGTGCACTAAGCGGGC
GCACCCCGACAACGGCTGAGTGGATCCAGCTCATCTTCGAGCACATCCCT
ACGTGCACCGTGGCGACCTTTGACTAGTGTGTGTGTTCGTTCCATTTATG
ATTGGCGACAGTCCCCGATCAAGGTGAGACGTGTGCAACACGTTGCGGTG
TATTAACGGACTACCCTTTTTCAGTTGATTTTTTTATTACACTAGAACCA
ACCGGGGTCACACAGTAGGGGGTAAACACAAGGTATTTTTATGACTTTTT
ATGACTTTTATTTTTGCCCCACCTTCCTCCTGCGGTGCGCCTCAATTTTT
TTCGCGAGAAGGGTTCGGCCGTCCCTTTCCCTCGTCAACGTTGTTAATGT
CGAAGTTTGGTACTGACGAGCTTTTAAGCTTTTTTCGCTTTTTTCGGCAA
ATTTGCAAATTTTTCACCCCTAGGGGGATTCGAACTCACGACCTTTGCTG
CTAGATGGCTTCGAGGCTACCACTAGACCACCTGGGCGACCGGTCATTGA
ATAAACTTAAAAGTCGTCGAGGCACAGTCCGAGGACGGAAACCCCAAGGG
CGTGATGGTTCTTGGAGTGAAACGGGGGCGAAAGCAGCACCCCCTCTGCT
TAGAATGTAAACATTTTCGTACGCACTAGACGCAAGCACCACGCCACTCT
TGGGCACCCGGAGAAGGTTGCGGGAGCTCGTGTCTTTTTAGCCCCACTAT
TGACCCTCCGAGTCCACCAGCAATCCGGGTTCCTGTCTCTGCATGTGAAT
ACGCGCGCTGCCAGAAGCCTCAAGACCACCACGATGGGGGGGGCATAAAC
AAGGCCGGCAGTGCCACGTGGATGAAGACCTGGACGTCTTTGGCCTGAAG
GAGAAGTACGGGGTGTGGAAATTAAGTGCCGGAAGGATGGAGGACAGACA
ACACGCTGAGGTCGAGGGGGGGGTGGCACTTCTTCATTGCACCGTGGCGC
CGGCGAGTGAGGGAGCAATGAAACGCCAGCCGGCGATGGAGGGAAAGGAG
AAAGCGGGAGAGGTTGAGGAAGCAGCCGCGGAAGGCCGGCTCGAAACGGA
GGAGGAACGGCGAGGGGGGTCATGCGACCGGGGAACAGGTCGTAAACGGT
ATGGAAGGAGAACCCCGTGACGGGGGCTTCTTGGCTCTGTGCGTGGGCGT
GCGTGGGTTCTTTTTCGTTTTCGGCGTGACTGTGTTTGGGGTTGCACCTG
GCCAACAACCCGGTCACCACCCCCAACTCCAAGCACATCGACATCCGCCA
TCACTTCCTCCGGGAGCGGGTTGCACGGGGAAAGTTTAGGGTAGAACACA
TCCCGTCAAAGTTGCAGCACGCCGACTTCCTGACGAAGCCGCTTCACAAG
GAAAAGTGTTTCGCGAACCGCAACTTTGTCATGAAGCTTTAAATTTGTAT
ACAGCCACCGTTTCGTTCAGTTTTTGGCTGTATGCAATTTTTCTGATGGG
TCTGGGGGGCCGATGTATTTCTTGTGGTTTGCGCTCTATGTTTGTGCTTT
TCGGTATACTGCTTGATTGATTTTTCGTAACTTTTGATTTGGACGTTTCG
CACTGTTGGTATTGTGTTTGATTTTCGGTTTTTATCTTGATTTTCTGCCA
TGTGCTGCTCACGAGAATCTTGGGGGCTTCGTGTGTGTCACGATTGTCGC
TGTAACACAGATGCTTGGTTGTTTTTGAGTTTCGTATTTTCATTTTGTGT
TCTTGAGCTGCATTCTTTGCGAAGATGAACGAGGAGGAAGTCCGTGATTT
CGTTTGTACGATTTGCGATTTTTATGTTTGTGCTGTGTTGGATATTGCTT
GATTTTGCTGCACTGTTTACGAAAATAATAAGGGGGAAATTTGGTGTGTC
ATGCTTCTCGCCACAGTGCAGGCAAGGTACATGTTCCGTTTTCGTATTTT
TATATTTTGTGTTCTGAGCTATATTTTCGCGTTTCATCTACCGAAATTAA
GTGTGGTTTTGACTCGCAACACCTTGTCTCAACGGCGTGTGCCAACAGAC
TTCGGTATTTGTGGTTCTGTATTTTCTCACGGAATGGGAGGTCAAATATT
CATTTGTGTCCTTGGTTTGAACTTGCAGCTCATCTCTGTGGTGCTTGAAA
ACGTACTTTTTCGTGCTACCATGTTCTTTCCTTCGGCGCCATCCGAAACG
TTTGATTCGCAATTAATTGTTGATTTCTCGTTGATTCTTGCGATTGAGAT
GTAGGCTTTTCGGATGCATTGGACTTTTTATGTGTAGGAGATGTTGCAGC
AGGGGGGCTGTTAACACATTGCATTTGAGGTGGAATATTTGAGCAACAAA
CACTGACCACGATTTCCTCTGGCGCTTCCATGCGCTGGGTTTTTAATTTT
CGCTGATTACCCGTGTTTGCCTTGCTGTTTCTATGTTGCCTTCAAGGATG
GGTTCGGCATGTCTAGACTGGTCATTTGTTGAGCTTCAATGCTTGTAGGA
CTTCTTGAGATTGGTCAACAAGTTGAAATGTGATTTTGGTTGAAGAATTT
GTCCTGATGGATTAATACATATCCCCGGAATTCTTCGATTCTCTCTCCGA
CGGAATGTTATTTGTCATGGATATTTTCCGCGACGATTTTGTGTTTTGAC
AGATTGACAGAGTATCAGGAACTTAATTGGTAGAATTCGTGGATAAACGG
AAGCGTTTTTTTTGTCGGAGATGGATTCGTCGAGATTTCCGTGAAATTGA
ATATTCAAAGAGACGCCTTTTGACGAATTGGCGTGTTGAGTTTGGTGTGG
ATATTTTCTTGAGGGGATAAAATTGGTTGACTTTGGAATTTTGATTTACT
GCCGTTTTCCCTGGCAATGGTTGGAAGTTATTGATTTGAGTTTGGAGTGT
CAGTACCTCGCACCGAGTAGGGGGCTGTGTGGGGTACACGGTGGAGATGG
TCTGCGGAGCCCCTGGAAGGTGGTGACGTAGATTCGATTGTTTGCTGATT
GTGTGACGGAGCCCCAAAGGGCTGGTGTGAGCTCTCGGGCTGTCCCACCT
CGATAATACGGAGTCAACATATTTGTGCACAGTGCCTCGGGACAAGAAAG
CCTCGCGTGTTCACTTTAAGTCACGCCCCAACACCCTAACACTGTGCCCG
GCTTTGTGGCCACAGGTCCTTGATTTCTGGAGAAGACCTTTTGTGAGAGA
CGAAAAAAAACATATTTGAAGGTCGGCACCTACTCGGAGCAGGGAAAACA
GG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1250:39779..44380-

>mRNA_P-lacustris_contig1250.1822.1 ID=mRNA_P-lacustris_contig1250.1822.1|Name=mRNA_P-lacustris_contig1250.1822.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1482bp|location=Sequence derived from alignment at P-lacustris_contig1250:39779..44380- (Pleurocladia lacustris SAG_25_93)
ATGGCGACCTCGGAGCCCATCGCGATCATCGAGATTGACGAACTTGTGAC
GGAGGAGCAAGCGGCCCGGTCAGTCCTCGTGCAAGGGTTGCCGATCCTCG
ATCGACGGCCGACGGAATCTTCCGTGGTGGAGGTTTTCTCGGTGTACGGA
CGAGTCTCCAGGCTTCTCCTGCAGACGATCCGATTGAGCCAGACCCAGAG
GGCTCTCGTGGTGTTCGCAGAATCGGCGGGGGCTACCGCGGCTCTGCAGC
AGAACGACCGCGACATCCTCGGCGCGATCTGCAGCGTGCGCCTGTCGTCC
ACGCTAGCCGCTTCGAACGAGAGGTTCGACCGCGACAACGTTCACTGGAT
GGATGGCGACCTCGGAGCCCATCGCGATCATCGAGATTGACGAACTTGTG
ACGGAGGAGCAAGCGGCCCGGTCAGTCCTCGTGCAAGGGTTGCCGATCCT
CGATCGACGGCCGACGGAATCTTCCGTGGTGGAGGTTTTCTCGGTGTACG
GACGAGTCTCCAGGCTTCTCCTGCAGACGATCCGATTGAGCCAGACCCAG
AGGGCTCTCGTGGTGTTCGCAGAATCGGCGGGGGCTACCGCGGCTCTGCA
GCAGAACGACCGCGACATCCTCGGCGCGATCTGCAGCGTGCGCCTGTCGT
CCACGCTAGCCGCTTCGAACGAGAGGTTCGACCGCGACAACGTTCACTGG
ATGGCGTGCACCGTGGCGACCGTTGATGATGACGGGAGAATTATGGCGGA
GGTCGGCAAGCTACACGGCGTGACGGAGCAAGAAGCGGTCCGGTCGGTCG
TCGTGCAAGGGCTGCCTGTCCTTGATCTACAGCGGACGGAATCTTTATCT
TCTCTTGAGGAGGTATTCTTGGCGTACGGACGCATCGGCAAGCTCCTCCT
GCAGACAATCCATCAGAGCCAGACCCAGAGGGCTGTCGTGGTTTTCAAAC
AATCGGCGGGTGCCACCGCGGCTCTCCATCAGAACGGCCGCGATATCCTC
GGCGCGAGCTGCAGCCGTGCACCGTGGCGACCGTTGATGATGACGGGAGA
ATTATGGCGGAGGTCGGCAAGCTACACGGCGTGACGGAGCAAGAAGCGGT
CCGGTCGGTCGTCGTGCAAGGGCTGCCTGTCCTTGATCTACAGCGGACGG
AATCTTTATCTTCTCTTGAGGAGGTATTCTTGGCGTACGGACGCATCGGC
AAGCTCCTCCTGCAGACAATCCATCAGAGCCAGACCCAGAGGGCTGTCGT
GGTTTTCAAACAATCGGCGGGTGCCACCGCGGCTCTCCATCAGAACGGCC
GCGATATCCTCGGCGCGAGCTGCAGCCGTGCGCCTGTCGTCCACGCTAGC
CGCTTCGAACGAGAGGTTCGACCGCGACAACGTTCACTGGATGGGCGAAG
CTGACGTGCGCCTGTCGTCCACGCTAGCCGCTTCGAACGAGAGGTTCGAC
CGCGACAACGTTCACTGGATGGGCGAAGCTGA
back to top