mRNA_P-lacustris_contig125.1809.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig125.1809.1
Unique NamemRNA_P-lacustris_contig125.1809.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig125.1809.1 vs. uniprot
Match: A0A835YH16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH16_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.760e-39
Identity = 71/150 (47.33%), Postives = 97/150 (64.67%), Query Frame = 1 
Query:   19 RIFTHRKSVEEDHAFLINSMPGGLSGRLQQLKVDEETTFRRVRRLIELTEDGGMMRRTPLFQELLFTMVNSPNPHNYGKDLFYKYRFAVLKDSHDVLPTPTLVPLEHDKSDVPVLNYYRNQ--------DLIIVPATQISPSGRCTPIPE 444
            R+FTH   VEE H+F++ S  GGL+GRL+ + +DE T   ++R+LIE+  D GM+RRT L+QELL  M  + NPH+YG +L   YR    K   D    PT++PLEH+++   VL Y   Q        DLI+VPATQ++PSG CTP+PE
Sbjct:    6 RLFTHPVPVEEQHSFVVASEAGGLTGRLEHVTIDEHTALGKLRQLIEVQSDRGMLRRTTLYQELLALMQRARNPHHYGSELALTYRLGYFKHDDDSA-VPTIIPLEHEQAGRLVLEYLEAQEARIKDGIDLIVVPATQVAPSGLCTPVPE 154
[Close]
BLAST of mRNA_P-lacustris_contig125.1809.1 vs. uniprot
Match: A0A7S2BP03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP03_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.070e-21
Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = 1 
Query:    1 MVVLHVRIFTHRKSVEEDHAFLINSMPGGLSGRLQQLKVD-EETTFRRVRRLIELTEDGGMMRRTPLFQELLFTMVNSPNPHNYGKDLFYKYRFAVLKDSHDVLPTPTLVPLEHDKSDVPVLNYYRNQDLIIVPATQISPSG 423
            M  + +RIFTH +SV E H+FL+ +  GGL+ ++  + +D   TT   +R+LIE T D GM+RRT L+QELL    + PNP+ Y       YRF ++ +  +++PT     LE +           + D+II+P +QI+P G
Sbjct:   20 MARVTIRIFTHPRSVFEQHSFLVGNEQGGLTEQIGVVPIDLNHTTLTMLRQLIEATNDRGMLRRTVLYQELLSVSNSLPNPYGYSGVEKAHYRFGIMANPDEMVPTLIPQDLEDELLVSKAYPSLVDFDVIIIPQSQIAPDG 161
[Close]
BLAST of mRNA_P-lacustris_contig125.1809.1 vs. uniprot
Match: A0A067C2G5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2G5_SAPPC)

HSP 1 Score: 74.7 bits (182), Expect = 9.350e-14
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 1 
Query:    1 MVVLHVRIFTHRKSVEEDHAFLINSMPGGLSGRLQQLKVDEET--TFRRVRRLIELTEDGGMMRRTPLFQELLFTMVNSPNPHNYGKDLFYKYRFAVLKDSHDVLPT--PTLVPLEHDKSDVPVLNYYRNQDLIIVPATQISP 417
            +V + VR+F        +H++++ S PGGLS  +  + +D++   TF  VR  IEL +DG + RR  ++QE LF M +S NPH +       Y         D++PT  PT    +  ++ + +       DLI++P +QI P
Sbjct:    2 VVRIKVRVFLFPVDPLVEHSYVVGSRPGGLSSVIGMVVMDDDDDLTFESVRPRIELQQDGSVQRRHIMYQEALFLMTSSANPHQWPVKALQTYWLGYYAHEDDLVPTVIPTADEQKPLRAVLDMKTTKLTADLILIPQSQIGP 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig125.1809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YH16_9STRA1.760e-3947.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BP03_9STRA5.070e-2137.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A067C2G5_SAPPC9.350e-1431.47Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig125contigP-lacustris_contig125:46830..51098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog157072.XP_008875322.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CKKV@1,2S1YK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size465
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig125.1809.1prot_P-lacustris_contig125.1809.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig125 46830..51098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.1894007-CDS-P-lacustris_contig125:46829..468641622815564.1894007-CDS-P-lacustris_contig125:46829..46864Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 46830..46864 +
1693493615.5751357-CDS-P-lacustris_contig125:46829..468641693493615.5751357-CDS-P-lacustris_contig125:46829..46864Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 46830..46864 +
1622815564.199489-CDS-P-lacustris_contig125:48960..490841622815564.199489-CDS-P-lacustris_contig125:48960..49084Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 48961..49084 +
1693493615.584565-CDS-P-lacustris_contig125:48960..490841693493615.584565-CDS-P-lacustris_contig125:48960..49084Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 48961..49084 +
1622815564.2114127-CDS-P-lacustris_contig125:49736..498711622815564.2114127-CDS-P-lacustris_contig125:49736..49871Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 49737..49871 +
1693493615.5925632-CDS-P-lacustris_contig125:49736..498711693493615.5925632-CDS-P-lacustris_contig125:49736..49871Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 49737..49871 +
1622815564.2217536-CDS-P-lacustris_contig125:50927..510981622815564.2217536-CDS-P-lacustris_contig125:50927..51098Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 50928..51098 +
1693493615.6030989-CDS-P-lacustris_contig125:50927..510981693493615.6030989-CDS-P-lacustris_contig125:50927..51098Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig125 50928..51098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig125.1809.1

>prot_P-lacustris_contig125.1809.1 ID=prot_P-lacustris_contig125.1809.1|Name=mRNA_P-lacustris_contig125.1809.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=155bp
MVVLHVRIFTHRKSVEEDHAFLINSMPGGLSGRLQQLKVDEETTFRRVRR
LIELTEDGGMMRRTPLFQELLFTMVNSPNPHNYGKDLFYKYRFAVLKDSH
DVLPTPTLVPLEHDKSDVPVLNYYRNQDLIIVPATQISPSGRCTPIPEMS
QRLP*
back to top

mRNA from alignment at P-lacustris_contig125:46830..51098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig125.1809.1 ID=mRNA_P-lacustris_contig125.1809.1|Name=mRNA_P-lacustris_contig125.1809.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4269bp|location=Sequence derived from alignment at P-lacustris_contig125:46830..51098+ (Pleurocladia lacustris SAG_25_93)
ATGGTGGTGTTGCATGTGCGAATCTTTACACACAGGTAAATGTGGCCGCG
TTTTCGCTTGGGGTTTGTTTGTTGGCGGAAGTGATTGCGCCTCAGATAAA
CAAATAATAATCATTTTTTCTCATCATTTTTTGTGTTACAAGTAAAGCAC
TTCTTCTGTACTTCTCTGCCTCCCCGCCTCCTACCCCAAGCATGGGTCTT
CGAGCTCACTAGAGCTCCTCTTTCACAAGCGTGAATTTGCGAAACCTGAG
CAGCAAGCAATGATGTACAGCACAACAACAGTAGTAGTAGCAGCAGCGCA
GTGTGGGGTGTGCGCTGCGTATGTGTTGACTGTGCGCGTGTGTGTGCAAT
TGTAGCAGTTCATTCTACGGCAAAGTGGATTTTGTGTAAAAGCGGCCGAG
CGACTTGACCGGTGAAGCGCTATAGCAACTGAGCCACTGTCACATTCGGT
GTGCGAGCTTTGGTTGTCATGAGTGGTCACCTACTACGCGTCCCCACAGA
CAGGGCGGTTGGGACCAGACGATATATATATTTCATTGGTGCCTGAATGA
AAGAACGTGCTGGGTGGGTGAGTGGGTTGGTGGGTGGGTGGTGTCTGAAA
AGAAATCCCTCATCTCTGTTTTCGTTTGTGGAGAGGGTGAAAATACAACT
ACTACTGTTTCATACTACTTGTCAATGTCCACGGGGTGTGCCCCATCAAT
CATGATGCTCGCATATCTTGAGGTTGAAAATTCAAGTCCGCAGACCCGCT
GAGAATTCCCTCCGGAATATAATGTATCGGCTTCTTTGCAGCCCTAAAAA
TCAGACGGAGCAAGAGGGCGCCGACGCCCAGAGCTGATGACTACCAGCAG
CCTCTCTGATGTATTGTAGTGCCTTCCTCTGTATATACACACACATGACA
TATACGGAGTACTTTGTACAACAAAGAAAAATCCTGGCAAAAAAAAATCG
AACATTTCTCTAATTTGTAGTAATAATACAGACAGAGCAAGAAGAGGGCG
CCGACGGCCAGAGCTGACTACAGCAGCCTCTCAGTAGTGCATTCCTCTAT
TTTACACACACACATGACATACTCTATACGAAGAAAAATCCCGGAACCAC
GGACCACGAGATCGCCCGAACGATAATCGAGAGCAACACCAACATCTCTA
GCTGCACCGACCGTTGTTGCTAAAAGAAAACATGCAGAATAGACGAGATA
GATGCAGACAGATTATGTGTGTACCTCGTTGAAACAACAAGATCGCCCAA
CCAACTACATGCACATCAGAGATAGAGAGAGATACAGAGAGAGATAGAGG
GAGACAGAGAGGGAGAGGGGTATACACACTGTCTGCTATAAGCATGCTCC
TCTTGTTGAACAAACGAGAGAAGGGTTGATGTATCTGCTAGTACTAGGTG
GAAACGTAGCTAGCGTGACGAGTTTTGAGATGCTTCGTTCAACTGGCGCG
CGACGCTGGCGGTTGTTGTATGCAGTGATTTTCTCGTGTTGTACAGCACA
GCGCTACACAAGTAGTACGGATGTGTAGGAGGAGGAGGAGGAGGGGTATA
GCCGTGGCTCTGCTCCCTTCATCACAAGGCCTTGCAGCTGTCCTATTCCT
CGAGGCAGACAGACAGGTAGCCTGGGAAGCACTCGTGCGTGCGAGCGAGC
GGAGAGAAACTGACGGGAAAGGAGCAGTGACACCTAGCAACCGCTGTAGA
CCCGTGACACCAGTAGTTGGTACCACTACCTACCGCTGTGAGTACAACAG
TAGAACATGCTTGCTGCCCTGGGACTACACTGCGGAGTTCTGGATCTTTC
GTTGTACGACAGCACACCCGCAAACAGGTCACACCAGCATACCCCAGCAC
CTTGAAGTTGGGAGTTGTTCGAGTGCTGTCTTTCTCTCATATATGCCTGT
TACGAGGAGGGTGTGTTTCACTTCTGAGTTGTGCACTAACGGTGACTTTC
TTTGTTTTTGCTGGGAAAAGATATTTTTTTGAAAATTAAAAATTTGAAGC
TAGTTAAATGACAAACGACGACGACGACGAAGACCATCCTTGCTAAATAT
ATAGAGAATGATGATTTTTTCTGTCTGAAGACTCAGAAGGGCTAAACACG
CATCCCTACTGCTGTTGTTCAACGTATGTAGGAAGAGCGTGGAGGAGGAC
CACGCCTTCCTCATCAATAGCATGCCCGGAGGATTGTCAGGGCGTCTACA
ACAGCTGAAGGTGGACGAAGAAACGACGTTCAGAAGGGTTCGAAGATTGA
TCGAGGTCCGTCCACTGAAATACCAGGCTCTACAGCAGTACCTTGCCCCA
TTTGTTGTGGCGATGAATGGATGGAGCTAGATCGGCAGACGTAGTCTTTA
CGTGTGTGTATCGTCAAGACTGCATTTTGCTGGTAAACAAATGGGCGGAC
ACCCACAGCTGGTACAATCAGTGTTTGTTTGGGTTCGCTCAATATTTACC
AGTGTGTACAGAGTATCTAAATGTAATACGTTTAGATACAGGTGGTACTG
CTCACCCTTTCCTGGGCCTCTTATCTCCGAACAGTCAAGTAACCACTGTA
CCATGATATTTTGAGGGACTTCGTTCCGCCTGGATCAAGTATTGCAGCCG
TCGCCCGTGTCAAGGAGTATTCTACGAAAGAAAGTGTAGCATAGCAGCAT
TGTAAACGACTCGAGGTAGAACAGCCGGCTAAATGTTGCCCCTACTACGG
TATACGTATCGTTCGCGCTTTTTCTCCGGTACTTGTTGTGTTGTCCCGTT
GCCACCATTCATCGCGTTGGACAAACACACCTATTCGTTCATGACTTTTC
CCATATTTTTCACCGTTTCTCTTGTCCTGGCCTAACGGAGAACCGCATGC
AACACGTCAAGCGACGCAATGCTGCCCAATGCCCTTTTCGCTTTCGTGTT
GTTTCAGCTCACAGAAGATGGAGGAATGATGAGGAGAACGCCGTTGTTCC
AAGAACTCCTCTTCACGATGGTCAACTCTCCGAATCCGCACAACTACGGG
AAGGACTTGTTCTACAAGTACAGATTTGCTGTTCTCAAGGACGTCGTAAG
TGGGTGTCATGCATTCCGCTCTCCACCTATAGTCGTGGGTGTGTAGCTGC
TAGTCACCGCCCATAGGGTTGTCTATCTATCCAGCCTTATGAAGAAAAAA
AAAGAATCTTTGTGCATAGAATCAAGCGACGTGAGGGTGACCTTAACTGC
CAGAAGTAACTTGCAGGGTCGCATGGTGTGTGCAATCTCCTTTTCGCTGT
TGAAGTTTCGCGAACAGGTAGCAGATACGTTAGGTAGGTAACGAGGAACC
AAAAGGTACGCGCCATTTTCACAAGCAAATCACCTCCAGGAGTCGCCCTC
TGCGGGCAACTTGAGGACCAGCGGTGGTTCAAATAACACAGCAAGTACGG
GTAGGGGAAAGGGATCGACAATAACCAGGCCTTGGAGCCAGAGGGGGCGG
AGCGAGGCGGGCGACCTTTCCCTGAGAAACGCCGACCTCCCGTTTCTTGC
CTGGAATATTTCCACCCGCGGGGAAAAAAAAATCAAAAGACCAGGCTTGA
GTTGGAGCTTCGACCTGCTAAGTTGGAGGGAAAAGTTTGCGCAATGTGAC
ATCCCCTCTCCAAAACATAGCGACGACGTCGATCCGCATGCCTCTCCCTT
GGGACTGGCCCACTCCGTGCCATTTACAACAATGCTCTCAACTCTGCAAA
ACTAGAATTACGATGTAGACGAGAATAAATACCCCATGGACTCCCACAAA
AACGTATGCCGGAAGGCTGGCTTTTTTCACGTTGATTGGGGTGTATTGTG
CACATGGTACGGTACTGTTGACTTCGAATGTTCAAAACTTGGACAAAAAA
AATATGTGATGGTTGGACGTTTTGCGTGGTCATACTTTTTTTTTTTTTCC
GTTTTCAAGGTTTTCCCCCTGAGCTAGACTTGTCTGTGTTCGAAATGGAG
GACATCGCGATAAACAGCAGCCAGCAAAGGCTTGGGCATCACCATCTGTT
CACCTACACACCAATAATCATCAACGAAACAACCTCGTTGCTCTCGGCTG
CTCGGTCTCTCTTGAACCCCGTTGAACCGATCAAAGCACACCGCCGAGAG
CCACGACGTACTCCCGACACCGACGCTGGTGCCTTTGGAGCACGACAAGT
CGGATGTGCCGGTCTTGAACTACTACCGCAACCAAGACCTCATCATCGTT
CCTGCCACGCAGATATCACCCTCTGGCCGTTGCACCCCGATTCCGGAGAT
GTCGCAGCGGTTACCGTGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig125:46830..51098+

>mRNA_P-lacustris_contig125.1809.1 ID=mRNA_P-lacustris_contig125.1809.1|Name=mRNA_P-lacustris_contig125.1809.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=930bp|location=Sequence derived from alignment at P-lacustris_contig125:46830..51098+ (Pleurocladia lacustris SAG_25_93)
ATGGTGGTGTTGCATGTGCGAATCTTTACACACAGATGGTGGTGTTGCAT
GTGCGAATCTTTACACACAGGAAGAGCGTGGAGGAGGACCACGCCTTCCT
CATCAATAGCATGCCCGGAGGATTGTCAGGGCGTCTACAACAGCTGAAGG
TGGACGAAGAAACGACGTTCAGAAGGGTTCGAAGATTGATCGAGGAAGAG
CGTGGAGGAGGACCACGCCTTCCTCATCAATAGCATGCCCGGAGGATTGT
CAGGGCGTCTACAACAGCTGAAGGTGGACGAAGAAACGACGTTCAGAAGG
GTTCGAAGATTGATCGAGCTCACAGAAGATGGAGGAATGATGAGGAGAAC
GCCGTTGTTCCAAGAACTCCTCTTCACGATGGTCAACTCTCCGAATCCGC
ACAACTACGGGAAGGACTTGTTCTACAAGTACAGATTTGCTGTTCTCAAG
GACCTCACAGAAGATGGAGGAATGATGAGGAGAACGCCGTTGTTCCAAGA
ACTCCTCTTCACGATGGTCAACTCTCCGAATCCGCACAACTACGGGAAGG
ACTTGTTCTACAAGTACAGATTTGCTGTTCTCAAGGACAGCCACGACGTA
CTCCCGACACCGACGCTGGTGCCTTTGGAGCACGACAAGTCGGATGTGCC
GGTCTTGAACTACTACCGCAACCAAGACCTCATCATCGTTCCTGCCACGC
AGATATCACCCTCTGGCCGTTGCACCCCGATTCCGGAGATGTCGCAGCGG
TTACCGTGAAGCCACGACGTACTCCCGACACCGACGCTGGTGCCTTTGGA
GCACGACAAGTCGGATGTGCCGGTCTTGAACTACTACCGCAACCAAGACC
TCATCATCGTTCCTGCCACGCAGATATCACCCTCTGGCCGTTGCACCCCG
ATTCCGGAGATGTCGCAGCGGTTACCGTGA
back to top