mRNA_P-lacustris_contig1244.1778.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1244.1778.1
Unique NamemRNA_P-lacustris_contig1244.1778.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1244.1778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1244contigP-lacustris_contig1244:51861..57407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size860
Cds size858
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1244.1778.1prot_P-lacustris_contig1244.1778.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1244 51861..57407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.1704202-CDS-P-lacustris_contig1244:51860..520161622815560.1704202-CDS-P-lacustris_contig1244:51860..52016Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1244 51861..52016 +
1693493612.776716-CDS-P-lacustris_contig1244:51860..520161693493612.776716-CDS-P-lacustris_contig1244:51860..52016Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1244 51861..52016 +
1622815560.1872256-CDS-P-lacustris_contig1244:55558..561411622815560.1872256-CDS-P-lacustris_contig1244:55558..56141Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1244 55559..56141 +
1693493612.7865617-CDS-P-lacustris_contig1244:55558..561411693493612.7865617-CDS-P-lacustris_contig1244:55558..56141Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1244 55559..56141 +
1622815560.2046187-CDS-P-lacustris_contig1244:57288..574071622815560.2046187-CDS-P-lacustris_contig1244:57288..57407Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1244 57289..57407 +
1693493612.799966-CDS-P-lacustris_contig1244:57288..574071693493612.799966-CDS-P-lacustris_contig1244:57288..57407Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1244 57289..57407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1244.1778.1

>prot_P-lacustris_contig1244.1778.1 ID=prot_P-lacustris_contig1244.1778.1|Name=mRNA_P-lacustris_contig1244.1778.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=286bp
DLASFLLCTPSQHLSSRHNDTRALLWRRTSCEVVHHCEEGSGRRERFHLI
SHPPRPSLCRSGIAHTAGLTPHSHAACTEIELAYSLRLHPILNACHRKPT
IPRSILLPRPNYAKQQWPREAPPRVAPLYSIYSAKASRVGRDSVRGAVSC
LGVFYTEYVVYRLGDEHENQNTHPYAPRTQRRILALAAEVVKAALDLGLL
RLSKSTSPAVYRETIRSRIRFLCVWQGKIYGSSTSILRVSSGKQPQIRTE
GQSKRGKSGVQQDSTSLEGRLDVVRGVVGSYGTGIR
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mRNA from alignment at P-lacustris_contig1244:51861..57407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1244.1778.1 ID=mRNA_P-lacustris_contig1244.1778.1|Name=mRNA_P-lacustris_contig1244.1778.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5547bp|location=Sequence derived from alignment at P-lacustris_contig1244:51861..57407+ (Pleurocladia lacustris SAG_25_93)
GATCTGGCCTCGTTTCTCTTGTGTACACCCTCTCAACACCTGTCATCTCG
ACACAACGACACAAGAGCGTTGCTGTGGCGTAGAACTTCGTGTGAAGTGG
TGCACCATTGCGAGGAAGGATCGGGGCGAAGGGAGCGCTTCCATTTAATT
TCACATGTGAGTCCAAAACACGATTTGAAGCTGTCGCTCAGAACGGGGTA
ACTTGCTCCCAAGCCTTACGCTTGCTTACACCCTCCTTGGTCACCTACAG
TACTTGGACTTGGATGCCATGGCAATTGGCTATGTATATCTGTCAAATAG
CCCGGGGGTTGCCGCCGATCTCAACAAAAGCTACAAGCCGCCAGAGCGAG
GCAATCGAGCTTTCGTCTTCCGAGGCACATGAGGGGTGGCATATCTCAGG
GACAAAATTTTGCATGGTCATCGGAGGGTTTCTGAGGCCGCCATGCTGAA
CCTCGCGTTGCAAGGGATTCAATAAAGCTGCCAACGCAACACCCCACATA
CTACCCTACAGGCGGTGGTCTACGGCGACTACAATCCGATACACAAGATG
AACACCAAACTATTTTGGCCGTCTACAAGCTGGCTCAGGGTCGACGCGGA
AAATTTTGTCAACAGGTTATACCGAGCTAAACAATGATCGATTCTCAGCA
GTTTTGGTGTTGCAGTGACCGGTGTATACAGCAGCGTGCAACAGGGTGGC
ATCACTGGTTGTTTGCATGTGGGCGAAAGAGCATCTCGACCAATCCGTGA
CCGTGAAACAGTTTTGGAACTAAAAAGTCGTGTTCCCATTCCCAACCTTC
GTGTTTTTTATTTCATACTGTTCCCCGTAGTCCAAGAAACTCAACGCAAA
AAAAAACGGATTTTAAAAACATGATCGTGAGGTCAAGATAAGACCATGAA
GGTTGTATGGGCGTGACGTCGTCAGAGAGTTGAATAAGAAAAAAAGGAGG
GTGATGGTTTCCGTTGTTTCTCGCCTCGAAAGCGTCCAATCTCCGTCAAA
TTTGGCAGGATGTTAGGGTTGGTTGCGGTGAATCCACCAAAATCATTTGT
GAAGTGATTTCTATTCTGGTGGCACTTACCGGTCTTTCAGGGTCTTGTAC
GGGGTTATAAACTTATGCGAGAAATCGCTGTTGAGTAAATTTTCCGCGTT
CAcCCTGAACCATCTTGTATTCTCGGGACGTTATTCATGTCAAAACAAAG
CAAAAGAGATAATGACTGTTGTTGGGTTGACGGTTAGTCGTGTGTGCAGA
GAGAGAAAGCCAGGCAAACTGCCCAGCCAGCTGTCTGTGCTAACTGCTTG
CTGGAAAGAGGACGAAATGAGAAGAAGTTCTCTGTCGCCGGCACCAACAG
CTGTTGCTGAAAATAATACGGGGCACGCAACGCAACAGCTGTTTGTGTTC
AGCAGCACTTGTTTAGTATAGTTTGTTTCGCTGGCAACTTGCTGTTTGTG
TTGAAGGATACAGGCAAACAGCAGCGAACAGCCTCTCGAACAGCCAAGAC
AAAATGTTTAAATGTGTTTACTTTGATTGTATGTTCGCCAAACTAGAAGA
CGTCCTGTTGGTCACGATGTAGAGTATGCGTAAGTGAAGCCATTGCAATA
TTTGTCGTAGGTGCCATAAATTATTCACCGAGATGACATGGCTTTTGTTT
TGTAAGGAAAATATATATGTTGGGCTGAGCGTTCAGCATGGGGTCCCTCA
TATTTTTCCCGTTCTCCATCCCTCAACCTCTTCTCCCGAAGGCATTTCAT
TTTGGTAGTCTAGTGTTGCACCTAGCGAACGATCCCTCGAACTTTCCAGC
AACTGAAAAGAAGCGTGACCTGGTGAACCTTTTTTGTGCGACACGTGGAA
AACACGGATGGATCTGCCCACGTCGCAGTTCATAAAGACACACTGCCAGT
GAGGCACAAGCGTCACAACCAAAATACATGGCTTCACGCTTCGGCTTCAA
CGCCTCCACAGCCAAGAGGAAAACACTCACTCCCGCGTCCCATGGCGAGT
GCCAGCGACCGTCGAAACACACGTGCGTAGATTTTGAGCAATCAGgatGA
TGCCATTTTTGATATGACAGGCTCGTGGCATCTGGAGAAAGCCCGACCTG
TGGAAACATAGCAGCGCCGTCACACCTTGTGCATGTGTTGCTACATATGT
CGGGCATGTATGTGCTGCGATAAAGCTGCACAACGTGTGATACGTGCTCA
TTTTCACTGTTACGTGCATCATTACCCTCCCTCAGCTGCATGGCCTATCT
AGCTGCATGTACACTGGCTCTGTCCATAGGTTGATTAATCCGGCCTGGAG
TTGGCCTACACCCCTTTTCCTCTCTGCTGTGTCACTGCTAGCTCAGGTAC
ACACAAATATGATGTCGAAGGGCTGCATCCTCATGCTTGTGCTGCAGTGT
GAGTGCATGTCCAATTTTGCCTCTCTCTGCTGTAACAGATGGCGCATGCA
TTGATATGTCGAAGGGCTGCGTCTTCATTCATATGCATACATATTGCTAA
CGAGATGACAGACATTCATACATACCTTTGCCTCTGCTGTGTCGCTGCTA
ATACATACATAGATATGTCGAAGGGCGCGTCCTCATGCTTGTCTGCAATC
TTTCTTCGACTCTGCTGTGACAGCTAGCGACCACATGTTTGTTTGTCGAA
GGGCTGCGTCCTCATGCATATATTCGTATGTGTTGCCATGTTTCCGAGAT
GGCAGACTTGCATGAATGCCTTTCCTCTGCTGTGTCACTGCTAGCCCATG
TATTGATATGTCTAAGGGCTGCGTCCTCATGCGGGCTGTCATTTACGTAC
ATGTACATCACGGCCTCGGTACTCCTTCAAAAAGCAATGTTACTCCTCCC
ACCCGCCGCTTGCAGCGTATCGTGCTGGAAGCGCTACTTATGTGCATGCA
TCCTCCGCGCTAATAGTCCCCTGTGTGACTGCTGCAAAGCTGTGCGACTG
CCACATACTAGACACATGCACATATAATGTGTGCGTGCAACGGCTGCTGT
TGTGGTGCCGCTGCCATGTAATGAAATGATACTATCATGTGCATACATGT
AGCGACTGCTGTGCAATGTCTTTCCTGTGCGACCTCCTCGAGGAGGGACG
AAAGAAACGTGCCCAAGCACACACACATAGGCATGCTTGTGTGCTACGAG
TAAGTGATACCCCCTTCTTTCGGGGCAGACGGGGTGCCGAACTGAATTCA
GAAAACCGGCCGTCAAATGTCATATTCTCCTTCATCAATACTTTTTCGAT
ATGTTCATGGTGCCAACTCTAGTCATCATGCATGAGCATGACAAGTATCT
TCTCAACCCCAGTTTGTTTCGAGACACGCCGTGTCGTGATGTCATCGAGT
GGTGTGTTTGGTTTTTGGGTGTACGCGCAAATCACTATGCGTTGCGCATG
TGTGGATTACGTATTGATATCTGTGCTCATTCAGTCAACCCATGTACAGC
TATGGAACAGTTGCTTCTCGCGCTTGTGGGGTTTTTGTCTCCCGCGCTGA
GCGTTCAGCATTTCACATATTCCTGCCAAGTTGGGGTCTCTGAGCCTTCA
CCATTTTGTCTCTAGGTTTCCGTGACTCCCCTTTCTCCATCCCTCGACTT
GCTGTCACGCCCGTTGTATCGGTGTACGCTTCCCCGTTTTTCCGCCTGGC
GGGTCGCGCGCGGCTGGGGGTCCTTCCGCATCACGATACGAGCTCCAGCC
TCCAAGACCTTCTTTATGTCGTTCAGGAATTGCTCACACGGCCGGTCTCA
CCCCTCATTCACACGCCGCGTGCACGGAGATTGAACTGGCCTACTCCCTC
CGCCTTCACCCCATTCTAAACGCTTGCCATCGCAAGCCTACAATTCCTCG
TTCCATTCTCCTCCCCCGTCCGAATTACGCGAAGCAGCAATGGCCCCGCG
AGGCGCCCCCCCGCGTAGCCCCCTTGTATAGTATATATTCTGCTAAAGCC
AGCCGCGTTGGGCGGGACTCTGTCCGTGGTGCTGTGAGCTGCCTTGGTGT
GTTTTACACGGAGTATGTCGTTTATCGACTGGGTGATGAGCACGAGAACC
AAAACACGCACCCGTACGCTCCCAGGACACAGAGGAGAATACTGGCACTA
GCGGCAGAGGTTGTGAAGGCAGCTTTGGACCTTGGGCTTCTCCGGCTCAG
TAAATCTACATCTCCTGCAGTATATCGGGAAACAATCCGATCCCGAATCC
GTTTTCTGTGCGTATGGCAAGGTAAAATCTACGGCTCATCAACTTCAATA
CTGCGGGTTTCCTCAgGGAAACAACCCCAGAGTGAGCTGTACCACTTTGG
CTTAGCAAGCAACGTTGTGCACCTTTTGCAATTTCAAAAACCGATTATGT
GACCCGATAGGGGGCGTTGTTCTGAGACGAATGACTGGTCAAACCGGATA
CTTTCAGCCTTTTCTTCCGGTTATCCGGCAAATCGAATGCACAGGGAAAC
GCCTCCCAAGCAACTAAGCCGAGAGTATTTTTGGATTGCGGCTGGCATTT
AAACCTTTAGAATGTAGAGGCCCACGATAGGTCAACGGGGGTCCGGATTG
CACAGGGTGGACACATTTGCCGCAAAATATCAATTTGCTCTGAAGTGGAG
AGAAAGGAGGGGGTCCATTTGTTAGGTTCTGGAGCGGGTCATACAATCAT
CTATATGATAGCTTATGTTGTAGGCTTGCGACTACACTTGCACACATCAC
CTGTAAATCTTGACCCTCCTTGTACCTATATCCTGTAGAGCAAATGTTTC
CTGTATCTCGCGATACTGATCTCAGTATGACTAGGCAAATCCAACCAAAC
CTTTTCAACGCAGAAAAATCACGGAGGGGAGCGGAGGGGAGATTGAGAAA
AGGTGTcCCCCCTGTGCAACCCGGACTCCCCCTTGACCTAGGCACGAGCC
TCACACATCTAAACGCCAACACGCAATCCTACAACGTTCTCGTTCTCAGT
GACTTCGGAGGCGTTTTTCCTTTCATTCGGTGAACCGGTTAACCGGATGT
CAGGGTTCTGACAGTATCCGGTTCAACCGGTGGTTGGTTTTTCAGAGTAT
CGACTTCTAGCCGATTATCGTTTTGTTTTTTTGCAAACGGCGGTCACTCC
TACTTGGGCGGCCAAGATGGTACGGCCCACTCTGGGGTGCTTGTCTCTGA
CATCCCGGTAGCCCTTTTGGTGGTAGTCTCTCGACGTCTTCCGCCAGGAA
AAATCGAACACAAGAGAGGCCCCAACATGACCCATGACCCCGCATCTTGT
TCTATGTGCCCCTCTGGGGCGTTTGACGACTTCACCTCTCTTTCGCGTTC
TGTCGCCGATGCTGGGGGGTGAAGTCTGTGTGACGATTCCACCGCCCTTT
TCTATATGTTTCAGCCGGGGACACCCCCAGCGGAAGTTTTTGTATCTCAC
ACTTGCTTCTGTTTTTTTCGGCGCACAGTTCGGACAGAAGGCCAGAGCAA
GAGGGGCAAGAGCGGAGTGCAGCAGGACTCAACCTCCCTCGAAGGCAGGT
TGGACGTTGTCCGTGGCGTTGTTGGAAGCTATGGAACCGGGATCAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1244:51861..57407+

>mRNA_P-lacustris_contig1244.1778.1 ID=mRNA_P-lacustris_contig1244.1778.1|Name=mRNA_P-lacustris_contig1244.1778.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1716bp|location=Sequence derived from alignment at P-lacustris_contig1244:51861..57407+ (Pleurocladia lacustris SAG_25_93)
GATCTGGCCTCGTTTCTCTTGTGTACACCCTCTCAACACCTGTCATCTCG
ACACAACGACACAAGAGCGTTGCTGTGGCGTAGAACTTCGTGTGAAGTGG
TGCACCATTGCGAGGAAGGATCGGGGCGAAGGGAGCGCTTCCATTTAATT
TCACATGATCTGGCCTCGTTTCTCTTGTGTACACCCTCTCAACACCTGTC
ATCTCGACACAACGACACAAGAGCGTTGCTGTGGCGTAGAACTTCGTGTG
AAGTGGTGCACCATTGCGAGGAAGGATCGGGGCGAAGGGAGCGCTTCCAT
TTAATTTCACATCCTCCAAGACCTTCTTTATGTCGTTCAGGAATTGCTCA
CACGGCCGGTCTCACCCCTCATTCACACGCCGCGTGCACGGAGATTGAAC
TGGCCTACTCCCTCCGCCTTCACCCCATTCTAAACGCTTGCCATCGCAAG
CCTACAATTCCTCGTTCCATTCTCCTCCCCCGTCCGAATTACGCGAAGCA
GCAATGGCCCCGCGAGGCGCCCCCCCGCGTAGCCCCCTTGTATAGTATAT
ATTCTGCTAAAGCCAGCCGCGTTGGGCGGGACTCTGTCCGTGGTGCTGTG
AGCTGCCTTGGTGTGTTTTACACGGAGTATGTCGTTTATCGACTGGGTGA
TGAGCACGAGAACCAAAACACGCACCCGTACGCTCCCAGGACACAGAGGA
GAATACTGGCACTAGCGGCAGAGGTTGTGAAGGCAGCTTTGGACCTTGGG
CTTCTCCGGCTCAGTAAATCTACATCTCCTGCAGTATATCGGGAAACAAT
CCGATCCCGAATCCGTTTTCTGTGCGTATGGCAAGGTAAAATCTACGGCT
CATCAACTTCAATACTGCGGGTTTCCTCAgGGAAACAACCCCAGACCTCC
AAGACCTTCTTTATGTCGTTCAGGAATTGCTCACACGGCCGGTCTCACCC
CTCATTCACACGCCGCGTGCACGGAGATTGAACTGGCCTACTCCCTCCGC
CTTCACCCCATTCTAAACGCTTGCCATCGCAAGCCTACAATTCCTCGTTC
CATTCTCCTCCCCCGTCCGAATTACGCGAAGCAGCAATGGCCCCGCGAGG
CGCCCCCCCGCGTAGCCCCCTTGTATAGTATATATTCTGCTAAAGCCAGC
CGCGTTGGGCGGGACTCTGTCCGTGGTGCTGTGAGCTGCCTTGGTGTGTT
TTACACGGAGTATGTCGTTTATCGACTGGGTGATGAGCACGAGAACCAAA
ACACGCACCCGTACGCTCCCAGGACACAGAGGAGAATACTGGCACTAGCG
GCAGAGGTTGTGAAGGCAGCTTTGGACCTTGGGCTTCTCCGGCTCAGTAA
ATCTACATCTCCTGCAGTATATCGGGAAACAATCCGATCCCGAATCCGTT
TTCTGTGCGTATGGCAAGGTAAAATCTACGGCTCATCAACTTCAATACTG
CGGGTTTCCTCAgGGAAACAACCCCAGATTCGGACAGAAGGCCAGAGCAA
GAGGGGCAAGAGCGGAGTGCAGCAGGACTCAACCTCCCTCGAAGGCAGGT
TGGACGTTGTCCGTGGCGTTGTTGGAAGCTATGGAACCGGGATCAGGTTC
GGACAGAAGGCCAGAGCAAGAGGGGCAAGAGCGGAGTGCAGCAGGACTCA
ACCTCCCTCGAAGGCAGGTTGGACGTTGTCCGTGGCGTTGTTGGAAGCTA
TGGAACCGGGATCAGG
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