mRNA_P-lacustris_contig1244.1776.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-lacustris_contig1244.1776.1
Unique Name	mRNA_P-lacustris_contig1244.1776.1
Type	mRNA
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)

Homology

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BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.770e-15
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2

Query:   41 RCMDAFVVAINQAFDREGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSEDMPARLLDDASPSETR 238
            RC++AF VA+N + D   WYTST +LQLASL+ CV CR V +LHL V++  +PARL +D + +E R
Sbjct:    6 RCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEAR 71

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BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.450e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 2

Query:   26 GSDARRCMDAFVVAINQAFDREGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSEDMPARLL 211
            G     C++A V+A+N+  + E WYTST +LQLASLE CV CR+  TLHL VD++ +P RLL
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQ-IPRRLL 167

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BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.820e-12
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 2

Query:   20 ESGSDARRCMDAFVVAINQAFDREGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSEDMPARLL 211
            + G   + C++A +VA+N+  D + WYTST +LQLASL+ C+ CR+  T+HL VD E +P RLL
Sbjct:   43 QKGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVD-EQIPRRLL 105

[Close]

BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.900e-12
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 2

Query:   38 RRCMDAFVVAINQAFD--REGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSEDMP 199
            RRC+DAFVVA++Q ++   + WYTST QLQLASLE C  CRS   LH+ VD+E  P
Sbjct:    7 RRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPP 62

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BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.720e-11
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 2

Query:   26 GSDARRCMDAFVVAINQAFDREGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSEDMPARLL 211
            G     C+    VA+N+  D + WYTST +LQLASLELC+ CR   TLHL VD+   P RLL
Sbjct:  130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHT-PRRLL 190

[Close]

BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.140e-10
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 2

Query:   41 RCMDAFVVAINQA-FDREGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSEDMPARLLDDASPSE 232
            RC++AF VA+ Q   DRE WY ST QLQLASL  C+ CR   TL L VD + +P RLL D   +E
Sbjct:   29 RCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVD-DSIPRRLLADVGGNE 92

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BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.220e-10
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 2

Query:   26 GSDARRCMDAFVVAINQAFDREGWYTSTAQLQLASLELCVVCRSVSTLHLVVD 184
            G  +  C++A  VA+ +  D + WYTST +LQLASLE C+ CR+  TLHL+VD
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVD 82

[Close]

BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.690e-10
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 2

Query:   26 GSDARRCMDAFVVAINQAFDREGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSEDMPARLL 211
            G     C++A VVA+++  D + WYTST +LQLASL  C  CR+  T+HL VD E +P RLL
Sbjct:  130 GPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVD-EHIPRRLL 190

[Close]

BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.970e-10
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 2

Query:   41 RCMDAFVVAINQAFD--REGWYTSTAQLQLASLELCVVCRSVSTLHLVVD 184
            +C+DAFVVA+NQ  D   + WY ST +LQL SLE C  CR V TLH+ VD
Sbjct:   40 KCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVD 89

[Close]

BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.500e-10
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 2

Query:   38 RRCMDAFVVAINQAFD-REG-WYTSTAQLQLASLELCVVCRSVSTLHLVVDSE 190
            R+C+DAF+VA+NQ  D RE  WY ST +LQL SL+ C  CR   TLH+ VD +
Sbjct:    7 RKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQ 59

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig1244.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
D7FXS2_ECTSI	3.770e-15	53.03	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G2S9_ECTSI	1.450e-12	53.23	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JRF9_9PHAE	2.820e-12	48.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1V9_9PHAE	3.900e-12	58.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KPY7_9PHAE	6.720e-11	51.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4H1_9PHAE	2.140e-10	53.85	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZZ4_9PHAE	3.220e-10	50.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FUL5_ECTSI	4.690e-10	50.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G0Z9_ECTSI	4.970e-10	58.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G3G0_ECTSI	5.500e-10	54.72	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig1244	contig	P-lacustris_contig1244:41152..44789 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	239
Cds size	228
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1244.1776.1	prot_P-lacustris_contig1244.1776.1	Pleurocladia lacustris SAG_25_93	polypeptide	P-lacustris_contig1244 41162..44789 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815560.536826-UTR-P-lacustris_contig1244:41151..41161	1622815560.536826-UTR-P-lacustris_contig1244:41151..41161	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1244 41152..41161 +
1693493612.9813209-UTR-P-lacustris_contig1244:41151..41161	1693493612.9813209-UTR-P-lacustris_contig1244:41151..41161	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1244 41152..41161 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815560.5476913-CDS-P-lacustris_contig1244:41161..41177	1622815560.5476913-CDS-P-lacustris_contig1244:41161..41177	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1244 41162..41177 +
1693493612.990727-CDS-P-lacustris_contig1244:41161..41177	1693493612.990727-CDS-P-lacustris_contig1244:41161..41177	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1244 41162..41177 +
1622815560.558998-CDS-P-lacustris_contig1244:44577..44789	1622815560.558998-CDS-P-lacustris_contig1244:44577..44789	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1244 44578..44789 +
1693493612.999823-CDS-P-lacustris_contig1244:44577..44789	1693493612.999823-CDS-P-lacustris_contig1244:44577..44789	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1244 44578..44789 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-lacustris_contig1244:41152..44789+
coding sequence from alignment at P-lacustris_contig1244:41152..44789+

protein sequence of mRNA_P-lacustris_contig1244.1776.1

>prot_P-lacustris_contig1244.1776.1 ID=prot_P-lacustris_contig1244.1776.1|Name=mRNA_P-lacustris_contig1244.1776.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=76bp
MEPESGSDARRCMDAFVVAINQAFDREGWYTSTAQLQLASLELCVVCRSV
STLHLVVDSEDMPARLLDDASPSETR

mRNA from alignment at P-lacustris_contig1244:41152..44789+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-lacustris_contig1244.1776.1 ID=mRNA_P-lacustris_contig1244.1776.1|Name=mRNA_P-lacustris_contig1244.1776.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3638bp|location=Sequence derived from alignment at P-lacustris_contig1244:41152..44789+ (Pleurocladia lacustris SAG_25_93)
GTTGGAAGCTATGGAACCGGAATCAGGCGAGTGCAGGCCCACAATTACCG
GCAACATCTCTAGGAACAGCGTCGTCGAGGTGTAGAACACACTTTACTGC
CTGAAATATAGCCCGACACGATCCCTCAAGATGCGCGGCTACATAAGGGT
TACCTGAACATTTTCCAAACCAAACGGCAACATGAATGCCGTTCCTCACG
TGAATATCTTGCCTATCCCGAGCTCCTTGGTCGATACAGATATTTTGTTG
TTGTTTTTGTTCACTAGATGACAGCGGCCTAAATGCACACCCGTACTCAA
TGTCAGTTGTTGTGGCATGTGGTAGTTGATCTAAACCGACGCGGTACACT
ACCGACCTTTCGTCCCCCTTAGCTGGTACAGCGATGAGAATGTAAGGCCA
AGGAATCTTACGTTGAGGCTGTCGAACTGGCGGACCTCGTCTAGAGCCAG
GCCGGCTCGCGGGGGTCTCATCCACGCGCTCACTTAGGCTAGGGGGGATC
ACCTCCTCGCCCCGTTCCGCGAGCACTATCGTTCAACCGATGCCTACCTT
AATCCACACAAGATACCACACCCCTTGGACCGATTTCAATTCTCGATTTC
TCCACACCAGAGACGGTGCCAACACCATGCCACTCGTCCGTGGAAAGGAA
TGAATGTCACCTGCTAGTGCTACCCATTTGGGGATTGGTACTCTCCATGC
TCTCAGAAATCGACAGCTTCGAAAACCGATCCAGCGGGTGTGGTCTCTTC
CGTGGAATACGGTACAGCTGGAAGACTGTTGTTGGTTGTACGGCGTTGTT
GTTTTTGGGGCGTGCTCGCGGGTTCGTTGCCGCCGCCCCCACATGTTTGC
TACTACTGTTTTGTTTGCCCTCGAGCGACCTTTGGAACCGACGCTTCCCC
TTGCTGCAATTCATGTGTTGTGCGAGCCTCGCACAGAGCTATGGTGGCTC
TTCTTCACGCCGCCGTACGTCGAGCGAGGTGTCTATTTCTTCCTCTGAGA
CATCGTGTAGCTTGATGTTTTGGATGCTTTGTCCCATTTTGCCCTACGGT
TCTGAACACTTGAAGAGATTGTACGTTTGCCACCACGCTACACGACGGCA
TGCATGCAGCCTATGTACGTACGGAGTCACCAGCCTGGCTATACTTCTAT
CAGTTTCTTGCTAGTCTAGTGCGCGGATATGGCAGCTGTAGTTTTTAAAC
GAGAATTTTTGCTTTTCCCACGTCAGGCTCCAACAACACCTTCAGCCAAA
CTGTGCGCGTCCGTAGCTTGTGCTCTTGCCAATGAGCGTTTGCTAACCGC
AAATGATCCATCGCGGCCTGTTTTCCTCTCCTTGATGAAATAACTTTGAT
ATTTTGTCCATCAAATATCCAATAGCATTTCACTTGACATGTGCTTGGAC
GCTAGACATCATCGTACAGCACAGGCGTCGGCGCTGAAAGTATTGCGAAC
AGATAGATAGACAGCCATGTATGCACGAAGTGTGCAAGTTGTTTCTGTGC
TTGACTCGGAAACCAAACTAAATTGTAAGTTGTGTGATAGGTATTCAGTC
TAGCCCTTCTAAGGCTTCAATTGCCGCCTTTCCCCCCTCGAGCAAATACT
TCCTATCTCCGAAACAGCAGCTTGTGAGGTGGAGAAATGTCGCTGGCCGC
AATTGTCAATGCTGGGCAGAAATCAAGTGGCATCTATCGTAGTTTGTTGT
TTGAGGAGTTGCCGCCAGGTGCACGGGCACAAAACTCAACTTCGTTGTGA
CAGAGAAGCATTATGTGTTGCAACAATAGTTCCAATCCAACCACCACCAC
CCAGCAAAACCACGCTCCGGATGAACAGAATGGTCATAAAGTGCACCGAC
AATAGTTTTGAGTTCTCTCCGTTGTACTTGTCTTAGTCAGACGTGGACCC
TGGCAGCAAGTATTTGCTAGAAAAGCAAACGCTCGGCAGGAGAAAATCCC
GGAACTGCTGCTGATATAGGCGTAGGGTTCACAGCGCCTGCCACAGCAAT
TCAGCCGAGGTCTTGAACCCGTGAACTCCAGTCGTTGCATCCAGGAACGA
CAACAGAGGCGGTTGGTTTGGTTTGGTTTGGtTTTGGTTCGGATGAGAAA
GGAGGGCTTTGCTATTCGGTATTGCCAACTAGCAGCGATATTTCATGTTA
CACATGTGTTTTTTGTCTTTTGCGCAGTGACAGCAATAGACTGGGGAAAT
GTACCTTTTCGGTCCGTTTGTTGGCACGATGCGTCTAGCTCAAACGGTGG
GGGAGTTATTCAAGGCATGTCCTGGTTGTTTGGGGTAGAACCATGAATAT
TTTAATGCTTGAACCTCTCGCTCCAAGTAATAACTTGTATCATTCCGCTC
ACATCTGATCGTTAGTGAGCGCGAGGTGAATAACGGTGTTCGATTTCGGC
CGGCCCTTATCGCGCTGGTCGAGGGATGCCAAAATCCCACAACTTGGAAG
GCAGGCTTAGCACACAAAACAAGGGTGGAGGCGTTTTGTAATTTGCTGGC
GTACAAGCTCGTTCGCCAACAAGTAGTTGCGCCTTCTGTGAAGCCTAAGC
GTGGCGTCACCGTCTCTCGATCGTGTTCGCTCCATTCGCTTGTATCAGTG
AATGACGACCTTAGCAGATCTTGTTTGATCCTTGGGTACATAAGAAGAAG
AAAGATGGCTTGCTGCGCTCGCGCTCATCCTGAAAATGGAGACGGAAGGC
CTCTAGCCATGAACCGACGACTTGCTTCTGGCGGCGCTTGGAGAAAACAA
TATAGAGGCCAGAAAGATGCAGATGATGCTGGGGCCGCGCGCGCTCCCTT
TCTCCCTTTCTCCCTTTCTCGCGAACGTGCTGTATCTGACAACCACAACA
GCGGTTCACGAGCGGATATATATGTGCAATTGATTCGAAGACGGCAGGAG
AGCGCCCCAGACCTGCATTGAATAGTCGCCATCATGTCTACGCTTGATAT
TCCTTTTGCAGTTGCGAACACACAGCAGCAGCACCGGCAGTAGAAGAGTG
CGCAAGCGTGCGCGTGTGTGATCATAGAGGGTTGTCCCATTTTTCGGCGG
GCTACTATTGGTGGTGTGTACGCGGCAACGTATCCTACTACTTCAATACT
GTTTCCGGTGTGTTGTGCATCATCACATCACCATCGCAGACATGCCTCGC
GTTTCTCTCCACCTTTCTGACCGCTGGCGCGCGGAAACAACAAGCACAAC
CGTCGTATGATCATCCGCGGTAGACGCAGCCATCTTGCAACGAAAAGCCC
TTGTTGCCATGATATCCGACCGTCGCTGACCGCACACTTGGAACCCTGAC
GGCAAGAATCGCAAGAATTTATTTCTCTCTCGCCAAGAGTTTCTGACAAG
TAATCGGGCCACAACGCCTCCATGACCTCACCAGGCAACCGCCGCGTACC
CGATGGTTTGTTCTCTTGCGATCCAGGTTCAGATGCACGTCGTTGCATGG
ATGCTTTTGTCGTGGCCATCAACCAGGCGTTCGACCGAGAGGGGTGGTAT
ACTTCGACCGCTCAGCTTCAGCTCGCGTCGTTGGAGCTCTGTGTGGTGTG
TCGAAGCGTGTCGACGTTGCACTTGGTGGTGGACAGCGAGGATATGCCTG
CCCGGCTGTTGGATGATGCGTCACCTTCGGAGACCCGT

Coding sequence (CDS) from alignment at P-lacustris_contig1244:41152..44789+

>mRNA_P-lacustris_contig1244.1776.1 ID=mRNA_P-lacustris_contig1244.1776.1|Name=mRNA_P-lacustris_contig1244.1776.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=456bp|location=Sequence derived from alignment at P-lacustris_contig1244:41152..44789+ (Pleurocladia lacustris SAG_25_93)
ATGGAACCGGAATCAGATGGAACCGGAATCAGGTTCAGATGCACGTCGTT
GCATGGATGCTTTTGTCGTGGCCATCAACCAGGCGTTCGACCGAGAGGGG
TGGTATACTTCGACCGCTCAGCTTCAGCTCGCGTCGTTGGAGCTCTGTGT
GGTGTGTCGAAGCGTGTCGACGTTGCACTTGGTGGTGGACAGCGAGGATA
TGCCTGCCCGGCTGTTGGATGATGCGTCACCTTCGGAGACCCGTGTTCAG
ATGCACGTCGTTGCATGGATGCTTTTGTCGTGGCCATCAACCAGGCGTTC
GACCGAGAGGGGTGGTATACTTCGACCGCTCAGCTTCAGCTCGCGTCGTT
GGAGCTCTGTGTGGTGTGTCGAAGCGTGTCGACGTTGCACTTGGTGGTGG
ACAGCGAGGATATGCCTGCCCGGCTGTTGGATGATGCGTCACCTTCGGAG
ACCCGT