mRNA_P-lacustris_contig1242.1770.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1242.1770.1
Unique NamemRNA_P-lacustris_contig1242.1770.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: A0A6H5KD20_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD20_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 4.610e-115
Identity = 170/209 (81.34%), Postives = 183/209 (87.56%), Query Frame = 1 
Query:   49 MTTKREKRGP-VEDFEDDYEDFDDDEAYESFCQTAEESGVQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWKKG 672
            M T++ KR   VED  DD++D+DD+  YESF    EE+GVQLGTVLPLEGSLA+SVLFKNVDWH+WDGGKAGGWPVWLNPRDLP PQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCS NSSVKALRCQL REN+FYPYEP H  SI AKQQ G+DPE WG +LCCVCGQLAKSACSKCR ARYCGREHQ+ HWK G
Sbjct:    1 MATRQSKRETAVED--DDFDDYDDE--YESFQGAGEETGVQLGTVLPLEGSLADSVLFKNVDWHDWDGGKAGGWPVWLNPRDLPAPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSNNSSVKALRCQLPRENEFYPYEPSHKASILAKQQKGSDPETWGAKLCCVCGQLAKSACSKCRIARYCGREHQTLHWKTG 205
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: A0A2D4CFA8_PYTIN (MYND-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFA8_PYTIN)

HSP 1 Score: 174 bits (440), Expect = 1.440e-44
Identity = 85/199 (42.71%), Postives = 114/199 (57.29%), Query Frame = 1 
Query:  160 GVQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWKKGVTRRYKKHKTERYPCWHARVLLRIHCHR 756
            GV+LG V  +E  +   +L  + DW EWDGG  GG P WLNP+ +P  + + C  C++PL+FL+Q+YCPLD + DAFHR LYVFCC +  C+K S  +A RCQL REN FYP        +S +Q            LC +CGQ A   CS C+ A+YC +EHQ +HW  G       HKT+   C   + ++    HR
Sbjct:   35 GVELGFVAKVEQPVDAKLLHDSSDWGEWDGGLVGGKPRWLNPKAVPSNEALSCSACAKPLAFLLQIYCPLDDQPDAFHRSLYVFCCRQTGCAKQSQARAFRCQLPRENAFYPATSGVQDFVSTEQLPA---------LCVLCGQRASFTCSACKVAQYCSKEHQKDHWSHG-------HKTDCAACQEQQRVIESETHR 217
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: A0A7S3HTG5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTG5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.620e-43
Identity = 83/197 (42.13%), Postives = 109/197 (55.33%), Query Frame = 1 
Query:   76 PVEDFEDDYEDFDDDEAYESFCQTAEESGVQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWK 666
            P    E+DY+D D ++         E   VQLG +        ++ LF + DW  WDGGK GG PVWLNP DLP    M+C  C  PL FL+Q+YCP+D  D AFHR +Y+FCC +  C K  SVK LR QL R N FY ++P    ++ A   AG  P A     C +CG      CS+C++  YC + HQ +HW+
Sbjct:   12 PKVQMEEDYDDGDSED---------EGGDVQLGFI----DKTMQNELFGDRDWRNWDGGKVGGAPVWLNPADLPPTSAMQCVHCCDPLQFLMQIYCPIDEVDSAFHRAIYLFCCKRKDCLKQGSVKCLRSQLPRTNPFYCFDP----AVEAPSSAGTAPRA---PTCALCGCRGSLVCSQCKNVSYCSKAHQKDHWR 188
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: A0A4D9CTI8_9STRA (MYND-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTI8_9STRA)

HSP 1 Score: 169 bits (429), Expect = 5.430e-42
Identity = 82/173 (47.40%), Postives = 104/173 (60.12%), Query Frame = 1 
Query:  154 ESGVQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWKKG 672
            + G+QLG V  L   +   +LF++ DW  WDGGK GG P+WLNPRDLP    + C  C  PLSF++Q+YCPLD  ++AFHR LYVF C K  C    SVKALRCQL REN F+  +P  + +   + +  A   A  VR C VCG  A   C+ C+   YC  +HQ E WK G
Sbjct:  100 DQGMQLGFVERLPEEMQNRLLFQDPDWRAWDGGKVGGKPIWLNPRDLPPQTLLLCPSCQDPLSFVLQIYCPLDEPEEAFHRALYVFVCQKFRCQGPGSVKALRCQLPRENSFFASDPRDIWNNGGRGKGRA---ALAVRTCDVCGLRADKVCAGCKRVSYCTHKHQKEGWKTG 269
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: A0A7S3HTH5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTH5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.630e-41
Identity = 83/197 (42.13%), Postives = 109/197 (55.33%), Query Frame = 1 
Query:   76 PVEDFEDDYEDFDDDEAYESFCQTAEESGVQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWK 666
            P    E+DY+D D ++         E   VQLG +        ++ LF + DW  WDGGK GG PVWLNP DLP    M+C  C  PL FL+Q+YCP+D  D AFHR +Y+FCC +  C K  SVK LR QL R N FY ++P    ++ A   AG  P A     C +CG      CS+C++  YC + HQ +HW+
Sbjct:   12 PKVQMEEDYDDGDSED---------EGGDVQLGFI----DKTMQNELFGDRDWRNWDGGKVGGAPVWLNPADLPPTSAMQCVHCCDPLQFLMQIYCPIDEVDSAFHRAIYLFCCKRKDCLKQGSVKCLRSQLPRTNPFYCFDP----AVEAPSSAGTAPRA---PTCALCGCRGSLVCSQCKNVSYCSKAHQKDHWR 188
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: A0A8K1FMV4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMV4_PYTOL)

HSP 1 Score: 162 bits (409), Expect = 3.280e-40
Identity = 79/170 (46.47%), Postives = 101/170 (59.41%), Query Frame = 1 
Query:  163 VQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWKKG 672
            V+LG V  +E  L   +L ++ +W EWDGG  GG P WLNP  +P  + + C EC+ PLSFL+Q+YCPLD + DAFHR LYVFCC K  C+K  S KA R QL + N FYP        I   + +   P      LC +CGQ +   CS C  A+YC +EHQ +HW KG
Sbjct:   28 VELGFVSKIEQPLDAKLLHESANWGEWDGGLVGGKPRWLNPATVPSTEALACTECATPLSFLLQIYCPLDDQPDAFHRSLYVFCCRKPGCAKQGSGKAFRSQLPQNNSFYP----PTSGIETFETSEPVPS-----LCALCGQRSVFTCSACHVAKYCCKEHQKDHWSKG 188
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: K3WP47_GLOUD (MYND-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP47_GLOUD)

HSP 1 Score: 155 bits (391), Expect = 2.110e-39
Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 1 
Query:   82 EDFEDDYEDFDDDEAYESFCQTAEESGVQLGTVLPLEGSLAESVLFK-NVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWKKG 672
            +DF+D+Y++  D               V+LG V  ++ + A ++L     DW +WDGGK GG PVWLNPR +P    + C EC   LSFL+Q+YCPLD   DAFHR LYVFCC  A CSK  + K  R QL + N  YP E      ++  +   +D        C +C Q A   CS C  ARYC +EHQ +HW +G
Sbjct:   12 DDFDDEYDEAQD---------------VELGFVARVQDADASTLLLHAQPDWSQWDGGKVGGKPVWLNPRTVPTAAQLACVECGHALSFLLQIYCPLDDVADAFHRSLYVFCCRHAGCSKQGNGKVFRAQLPQRNALYPEES----GVTHFEPPASDEMP---SFCVLCNQRAVFTCSACHVARYCSKEHQKDHWSRG 187
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: A0A3F2RVJ7_9STRA (MYND-type domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVJ7_9STRA)

HSP 1 Score: 147 bits (370), Expect = 6.370e-35
Identity = 81/202 (40.10%), Postives = 106/202 (52.48%), Query Frame = 1 
Query:   79 VEDFEDDYEDFDDDEAYESFCQTAEESGVQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNP--RDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEP--DHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWKKG 672
            + D EDD  D++D       C       V+LG +       +   L  N DW +WDGG+ GG P WL P  R LP  + ++C  CS PLSFL+Q+YCPLD + DAFHR LY+F C    CS+    +A R QL ++N FY  E   + +     KQ          V LC +CGQ A   CS C  A+YC +EHQ +HW  G
Sbjct:    1 MSDSEDDTLDYND-------CSP----DVELGFICDEPLDFSAQPLHSNPDWSKWDGGRVGGRPSWLCPSTRALPSTEQLKCSGCSSPLSFLLQIYCPLDDKSDAFHRTLYMFVCRSLGCSRQGDGRAFRSQLPQDNAFYAAESGANRLKETDEKQ----------VDLCALCGQRAVFTCSACHVAQYCSKEHQKDHWSAG 181
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: G4Z1T9_PHYSP (MYND-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z1T9_PHYSP)

HSP 1 Score: 147 bits (371), Expect = 6.780e-35
Identity = 85/200 (42.50%), Postives = 107/200 (53.50%), Query Frame = 1 
Query:   79 VEDFEDDYEDFDDDEAYESFCQTAEESGVQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNPR--DLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEHWKKG 672
            + D EDD  D++++ A E          V+LG V     SL    L    DW +WDGG+ GG P WL P    +P  + + C ECS PLSFL+Q+YCPLD ++DAFHR LYVF C  A CS+    KA R QL + N FY  E        A Q    D +   V LC +CGQ A   CS C  A+YC + HQ +HW  G
Sbjct:    1 MSDSEDDVLDYEEEAAPE----------VELGFVCDEPVSLDAKPLHCEPDWTQWDGGQIGGRPSWLCPSAAGIPSTEQLSCVECSAPLSFLLQIYCPLDDQEDAFHRSLYVFVCRAAGCSRQGDGKAFRVQLPKHNAFYAAEG------GAAQLKQVDDK---VDLCALCGQRATFTCSACHVAQYCSKAHQKDHWTAG 181
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BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Match: M4BLN6_HYAAE (MYND-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BLN6_HYAAE)

HSP 1 Score: 140 bits (354), Expect = 7.280e-35
Identity = 77/168 (45.83%), Postives = 93/168 (55.36%), Query Frame = 1 
Query:  163 VQLGTVLPLEGSLAESVLFKNVDWHEWDGGKAGGWPVWLNP--RDLPGPQDMRCGECSQPLSFLVQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPYEPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREHQSEH 660
            V+LG V   E  L   +L    DW +WD GK GG P WL P   DLP   +++C  CS PLSFL+Q+YCPLD  DDAFHR LYVF C  + C+     KA R QL +EN FY        +  A      D EA  V  C +CGQ A   CS CR A+YC + HQ +H
Sbjct:   19 VELGFVGEQEPVLDALLLHAEPDWTKWDSGKVGGRPSWLYPFAADLPSTMELQCQGCSNPLSFLLQIYCPLDDVDDAFHRSLYVFVCRSSGCNCQGDGKAFRLQLPKENAFYA------ATGGATAMKFKDAEA-RVGFCVLCGQRATFTCSACRVAQYCSKSHQKDH 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1242.1770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD20_9PHAE4.610e-11581.34MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A2D4CFA8_PYTIN1.440e-4442.71MYND-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A7S3HTG5_9STRA6.620e-4342.13Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CTI8_9STRA5.430e-4247.40MYND-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S3HTH5_9STRA6.630e-4142.13Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1FMV4_PYTOL3.280e-4046.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WP47_GLOUD2.110e-3941.41MYND-type domain-containing protein n=1 Tax=Globis... [more]
A0A3F2RVJ7_9STRA6.370e-3540.10MYND-type domain-containing protein n=4 Tax=Phytop... [more]
G4Z1T9_PHYSP6.780e-3542.50MYND-type domain-containing protein n=3 Tax=Phytop... [more]
M4BLN6_HYAAE7.280e-3545.83MYND-type domain-containing protein n=1 Tax=Hyalop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1242contigP-lacustris_contig1242:39968..46818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue9.4e-96
Seed eggNOG ortholog2880.D7G6U8
Preferred namePDCD2
KEGG koko:K14801
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006417,GO:0006725,GO:0006807,GO:0006915,GO:0006919,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0008284,GO:0009790,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010608,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0016070,GO:0016072,GO:0017145,GO:0019222,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022613,GO:0030097,GO:0030154,GO:0030162,GO:0030490,GO:0031323,GO:0031325,GO:0031326,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0035162,GO:0042127,GO:0042254,GO:0042274,GO:0042981,GO:0043021,GO:0043024,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0044703,GO:0044877,GO:0045595,GO:0045862,GO:0046483,GO:0046872,GO:0046914,GO:0048103,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048568,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051301,GO:0051336,GO:0051345,GO:0051704,GO:0052547,GO:0052548,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:1901360,GO:1901532,GO:1902033,GO:1902035,GO:1903706,GO:1903708,GO:2000026,GO:2000112,GO:2000116,GO:2000648,GO:2000765,GO:2001056
EggNOG free text desc.positive regulation of hematopoietic stem cell proliferation
EggNOG OGsKOG2061@1,KOG2061@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons10
Model size1951
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1242.1770.1prot_P-lacustris_contig1242.1770.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1242 40016..43165 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.022622-UTR-P-lacustris_contig1242:39967..400151622815559.022622-UTR-P-lacustris_contig1242:39967..40015Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 39968..40015 +
1693493611.9141467-UTR-P-lacustris_contig1242:39967..400151693493611.9141467-UTR-P-lacustris_contig1242:39967..40015Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 39968..40015 +
1622815559.09973-UTR-P-lacustris_contig1242:43165..432181622815559.09973-UTR-P-lacustris_contig1242:43165..43218Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 43166..43218 +
1693493611.9791117-UTR-P-lacustris_contig1242:43165..432181693493611.9791117-UTR-P-lacustris_contig1242:43165..43218Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 43166..43218 +
1622815559.1130655-UTR-P-lacustris_contig1242:43650..437101622815559.1130655-UTR-P-lacustris_contig1242:43650..43710Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 43651..43710 +
1693493611.9880023-UTR-P-lacustris_contig1242:43650..437101693493611.9880023-UTR-P-lacustris_contig1242:43650..43710Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 43651..43710 +
1622815559.1270347-UTR-P-lacustris_contig1242:44326..443921622815559.1270347-UTR-P-lacustris_contig1242:44326..44392Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 44327..44392 +
1693493611.997212-UTR-P-lacustris_contig1242:44326..443921693493611.997212-UTR-P-lacustris_contig1242:44326..44392Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 44327..44392 +
1622815559.1387756-UTR-P-lacustris_contig1242:44945..450651622815559.1387756-UTR-P-lacustris_contig1242:44945..45065Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 44946..45065 +
1693493612.0063937-UTR-P-lacustris_contig1242:44945..450651693493612.0063937-UTR-P-lacustris_contig1242:44945..45065Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 44946..45065 +
1622815559.148173-UTR-P-lacustris_contig1242:46003..468181622815559.148173-UTR-P-lacustris_contig1242:46003..46818Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 46004..46818 +
1693493612.0156143-UTR-P-lacustris_contig1242:46003..468181693493612.0156143-UTR-P-lacustris_contig1242:46003..46818Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 46004..46818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.032766-CDS-P-lacustris_contig1242:40015..400371622815559.032766-CDS-P-lacustris_contig1242:40015..40037Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 40016..40037 +
1693493611.927195-CDS-P-lacustris_contig1242:40015..400371693493611.927195-CDS-P-lacustris_contig1242:40015..40037Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 40016..40037 +
1622815559.045592-CDS-P-lacustris_contig1242:40613..408131622815559.045592-CDS-P-lacustris_contig1242:40613..40813Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 40614..40813 +
1693493611.935746-CDS-P-lacustris_contig1242:40613..408131693493611.935746-CDS-P-lacustris_contig1242:40613..40813Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 40614..40813 +
1622815559.055387-CDS-P-lacustris_contig1242:41287..414401622815559.055387-CDS-P-lacustris_contig1242:41287..41440Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 41288..41440 +
1693493611.9439392-CDS-P-lacustris_contig1242:41287..414401693493611.9439392-CDS-P-lacustris_contig1242:41287..41440Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 41288..41440 +
1622815559.0662277-CDS-P-lacustris_contig1242:42117..422071622815559.0662277-CDS-P-lacustris_contig1242:42117..42207Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 42118..42207 +
1693493611.9525635-CDS-P-lacustris_contig1242:42117..422071693493611.9525635-CDS-P-lacustris_contig1242:42117..42207Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 42118..42207 +
1622815559.0791311-CDS-P-lacustris_contig1242:42624..428011622815559.0791311-CDS-P-lacustris_contig1242:42624..42801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 42625..42801 +
1693493611.9611552-CDS-P-lacustris_contig1242:42624..428011693493611.9611552-CDS-P-lacustris_contig1242:42624..42801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 42625..42801 +
1622815559.0888343-CDS-P-lacustris_contig1242:43018..431651622815559.0888343-CDS-P-lacustris_contig1242:43018..43165Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 43019..43165 +
1693493611.9701107-CDS-P-lacustris_contig1242:43018..431651693493611.9701107-CDS-P-lacustris_contig1242:43018..43165Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 43019..43165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1242.1770.1

>prot_P-lacustris_contig1242.1770.1 ID=prot_P-lacustris_contig1242.1770.1|Name=mRNA_P-lacustris_contig1242.1770.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=263bp
MTTKREKRGPVEDFEDDYEDFDDDEAYESFCQTAEESGVQLGTVLPLEGS
LAESVLFKNVDWHEWDGGKAGGWPVWLNPRDLPGPQDMRCGECSQPLSFL
VQLYCPLDHEDDAFHRCLYVFCCPKASCSKNSSVKALRCQLRRENDFYPY
EPDHMVSISAKQQAGADPEAWGVRLCCVCGQLAKSACSKCRSARYCGREH
QSEHWKKGVTRRYKKHKTERYPCWHARVLLRIHCHRPRCFASLRWKFARS
RHHLRWHQMDAR*
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mRNA from alignment at P-lacustris_contig1242:39968..46818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1242.1770.1 ID=mRNA_P-lacustris_contig1242.1770.1|Name=mRNA_P-lacustris_contig1242.1770.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6851bp|location=Sequence derived from alignment at P-lacustris_contig1242:39968..46818+ (Pleurocladia lacustris SAG_25_93)
GGGAGCAACATCACACAACAGCTGCAACAGCAGTAATCAAGGACGGCGAT
GACAACCAAGCGGGAGAAACGTGAGTTGATACTAGCAGCCATGAGTACGT
CGCCTGTTGCCGTTGACCAGCGGGATTGCACTCACGCGAGTACCATTGCA
TCTTGTCGTGTACTTGGCCTTGTCCGGGTCTTGTCTATTCAGTTTGTGCG
GCGCTGATGGTTGCCTCCGCTACCTCTCTTTCCCGCACACATTCGAGCAA
CAGCATGTGAGCACAGCGCCACGGCTTGCGTACACAACGACTGGCGATCT
CGTACTGGTCAACGAGGTGATGCTGTACTCGATGCGCAAGTGTACACCAA
GGTGGAGACTCAGACAAAACGGGGGGCGTGGCCATCGAAATCATGCGATA
CAACCACGACTATACAACCATGGATGTGCACAACGTACATGTAGTTCAAA
TGCAACGAACGCCGGTGGCCGGTTGTATCCTGCGGGTGTCCTGCGGTGGT
TTGCTATCTTGTGCACGCATCTCATTGATGAAAGCAGTGCGTTGTTTCGC
CCGTCGGCAAACTGAAGTAGGACTCCGCACGCATGAATATATCGATACAT
ACTTACCTCCATATCGCCATTTTTCCGTGGTCTCTTTTTTTGGAAGGTGG
ACCGGTCGAGGACTTTGAGGACGATTACGAGGACTTCGACGATGACGAGG
CCTACGAGAGCTTTTGCCAGACGGCAGAAGAGAGCGGGGTGCAGCTCGGG
ACGGTGCTGCCGTTGGAAGGATCACTGGCGGAGAGCGTGCTGTTCAAAAA
CGTGGATTGGCATGAATGGGACGGGGGCAAGGCTGGAGGGTGGCCGGTGA
GATGCAGACATGGGCGCTGTTGCATGGTTCAGGTTTGCGTAGCTCCTTCA
TTCCCCCCTCCTGCTAGACACTTGTGTAGATCGAAAGGAGCTGGGACCGC
AGGAGCTTCCCCAAAACTCTTTCCTGCGCTGCCATGGATCAGAACCGGCA
ACCTGCTTTTCTTGGAATCTATCCTTGATTAGACGAGAGAACATGTGGTC
ATCACGGATGTATTAGAAGCGTGGAGTTCCGCCACGGCGGCGTTTCATTG
CGAGAGGCGCTTTGGTACACCTGTAAAAGGCATATGCCCTTGTGGCATGC
ACGCTCTCGATGGAAAATCGTATATCTGTAATATTTGTATATTTGACCCT
GCCGGTAGAGAAATTTTGTTGTTTTTCACCGGAGTTAACCGGAGTGGCCA
TGTTGATATGTGCTCGTTGTTCAATGTTTGGTCTTCCTGCACGGCGTGCT
GTCCGTCCCGGGAAATACAGGTGTGGCTCAACCCTCGCGATCTCCCAGGT
CCACAAGACATGCGCTGCGGCGAGTGCTCTCAGCCTCTCTCATTTCTGGT
TCAGCTGTACTGCCCCCTTGACCACGAAGACGACGCGTTCCACCGTTGCC
TGTACGTCTTTTGCTGCCCCAAGGTATCTATCTTATCAATCAATCTATCG
GTACAAGTGGTGTATGCCGCGTGGGTCACGACGATGACGACGATGATGAT
GAGAACGAAGCTGCTGTAGTTTCCTTCCTGAGGATAGAACGGTTGACAGA
TCTCGAATCGAATCGAACATAATCGAATCGAATCGAATGGCCGAAGATTG
CACCGGCAGGCGGCCTGTAGCCTTGATTGGTTGATCCTTGCCAAACCCCA
CATAAGACCCCGAACACTAACACGCAACCAGTTGTCAGTCTGCATTGCGG
TGGAGCCAACGGCAAGGGGACATATGTACAAGAAAATGATAAGAATGATA
CGATTATTTTTATTATTTTTTTCTGTCCTTTCTCGATAAGGTAAGGTCGA
TAAGGATTATCTCGTTGGGAGATGCTTTGATTATTTTTCCCGTGGAGGCC
TTAGGTAGCAGCATAGCACACGACTTTGGAGATTGCATGTGTTTTGGGAC
GCTTCGAAGGGGAGGTATCGCTTCTTACATTCTGGCGTAAGCTAATGCGC
AAGGCCGTAGCAGTACACGAGAACCTGAAACTCGTGCTCGAAACTCCTCA
CTACTTTCATGCGAGAACGAGCCTCTGCCAGCATTATTCTTTCGGGGGAC
AAAATCCTTGCACTATCTCTGCTTGCCATGTTTTTTCGCATTCCGGTAAG
GCTTCTTGCTCCAAGAATTCAAGCGTGAAGGCGTTGCGCTGCCAGCTTCG
CAGGGAGAACGACTTCTACCCTTACGAGCCAGACCACATGGTTGACGTGT
CGGTGGCGGCGGAAAATCAGGTTAGAGTTGTACAGTTGACTACTCGTCGA
CGAGACCGGGCAAGAATAATACGATAAGATAAGGCATCGTTGACGGGTAC
CATGGCGTGGTGCGATTTGTGGGGTAAGTCTTCGACGAATGCGCTGCAAC
TTCAAGCGTAAAAGGCCGTTCCGGTGTGTGGCATTCCAGACTTTGTTGCT
GCTTTTGCACCCCCCCCCTGGCTCTGGCCTTGAGTTTGTCGGCAATCTCG
ATTCTCACTTGTACTTCGTTCGCAAGTTGGCTTGTCTTCTCGCCTCGTTC
AGCCTTGATCTCCTCATGTACCCTACATCTCAGCTGGATACAAGGAAGAG
GCTGTCAAAGTTGAGTGTGCAATCTCTCCTTTTTTTCTGGTATCACCCAT
CGCTCAGGTGTCGATCTCAGCGAAGCAGCAGGCGGGCGCGGACCCCGAGG
CTTGGGGAGTACGGCTGTGCTGCGTGTGCGGTCAGTTGGCGAAGAGCGCT
TGCTCCAAGTGCAGGAGCGCGCGTTACTGCGGGCGTGAGCACCAATCGGA
GCACTGGAAAAAGGGGGTCACAAGAAGGTACAAGGTACAGTAGAGCTGAA
TTGCGGAGGATGACTTGAGGGTGGTAGCTCAAGCCTTTCATCTTCACTTC
CCGCCACACGATGCTCTTGTTGGATTTACCGGGTACCGCATATTGTTCGA
GTCGCATCCCATCGGGGAGCGTGTAACCATTTGTCCTTGTCGCCGGCTTG
ACCGACTCTGTGATTGATCGGATCAGGTTTGCGGTGTTGCCGGCGACCTA
GAAACACAAAACGGAGCGTTATCCGTGCTGGCACGCAAGGGTGCTACTGC
GAATCCACTGCCATCGGCCTCGGTGTTTCGCGAGTTTGAGGTGGAAGTTC
GCCCGGAGCCGCCACCACCTCCGGTGGCACCAGATGGACGCACGCTAGAG
GACACTTGGATGGGGAAATGGGGTTTGGAAGGCGCAGGTGCGTTGGTTAG
GGTGAGCAGGAAACGACTGCAGCCTGCAGCGTATGTGATCAACAAAGGGT
GTGATATGTCGGGTTTTCCTCTCCACTCTTTTACGAAAACTCGAAATGAA
GGCGAGAGAGAAAGAGCATCGAGGCGGGCAGGCAAGTGTGGCAATTCGGA
AGATGCGACCTATGTTGCACGGGGGCAGGGTTACAGTTAGGGTTGAGGGT
CTGGGGGTGATGAGCGAAATGACTTTATTTTATTTATCCAGCCGAAAAGG
TTCGCCGGAAACGAAATGCAAGAGCAAATTCATTCTCAGGAATGTCTCTA
GCTTAGGCTCCTATGGCTGAGACCCTCATGAAATTGCCGTGCAGCCTACG
CTAACGCCAACCTTCGGCTATTGCACGCTTTGTGGCGCTGTCATTGGTTG
ATGCCGTGATGCCGTGATGGCGGCGGCCCAGAGGAAGGCGAAGATGAAGA
TGACGACTCAAGGCTCTCTCAGGCAGAGCTGGACAAAGTGGCGGTGAGTC
AGTCGAATAAATGAATCGAATCGTTGCATGTTCGTTGTTTGATCGTTGCA
TGTTCGTTGTTTGATCGTTGCATGGGAGAGCCGGTGGTGCCTGCCTCGCT
CCGCAAGTACCAGGCGGTTAGAGCGTCTTTGTAGTTTCGAAGACTACTAT
ATTTTTCACCATGCGGGTAGCATAGCATACATGCGTCTACAGCAATACAC
GTGACGGTTGGCAAGATGGGCTTTCATAAGCTTTCGCTGGTGACGATGAC
AAAGGAGGACAGGTAGTTACAGTTTCTGGTTGAAACGTCGCCTTGCACTC
CAGGCTGACTCTGCTGATCATGTCACCACCGCGATTTCAGCTCTGGTCTA
GGCGGTTAAACTTGAGTTTGGCGTTACCGCGTTGTTCCCACTGGTCTCAG
GGCATATCATAAATTAGGCCGGGCCTCTAATCTGGCTTGTGACGCATGCT
GCATGCTACATCTGCGACTATCGCCCCGTTCTTAATCCCTCCACAGCCCA
CAGCCCACAGCCCACGCACCCCCTCCGTGTCGACGCCTCATAGGTTAGTT
ACCCTTGCGGTTTCTTCGTTCTCTGTTTGCTTTTGTCATGCCCTGTCACG
TCTTTTCAGGGCGTGCATGGATTCAAGGACAAGACCACTCTTCAGTTCCT
CGCCCGCACACAAGCCAACCCTCAGGTAGGGGTGTGTGACCGTTGTGATT
GTGTGGTTGATGCCTCGAGCATGATGCGAGTGCGTGATTCCCAAGAAAGA
AGCTACTAAAGCTAAAGCTCAAGCATGGTGTGGTATTCAATTCCGAAGCT
GGAAAGTGAGCGCAAGATGTGTCCGACCTTTTGCTGCCCACGCGTTGCTC
AAGGTGTTGTGTTCCGGTGCTACAGGGCCGCACCCACGTGGATAGGCTGA
TGGGAAGGAGTCCAGAACCGCTAGACTATAGATATGCTAGGATTTTCTGC
CGCTGCACACGTGTGGTGTTGGCAATGGTGTGCATCACAGCGAGCATGGC
GAACATTTCGTGTCCGCGAACGCTTGCTCTCTCGGATCCACGACAATTTC
TCCTTGCGGATCCACGACAATTTCTCCTTGTTTTCACATCTCAACCATAG
CCATCTCAGCGATCTCAGCCACACAAGGTACTTTACAAGGTACTTTTCAA
GGTACTTTACAAGGTACTTTACAAGGTACTTACAAGGTACTTTACAAGGT
ACTTACAACACCTTCCTTTTTCTTGCAGGTTGTTCGCTACGACGCTGTCG
GTGCGGGTCCGCTGTGGTCCTCGAGTAAAGGTATTCCTGGCGAAGGGGAC
GTGCCGCCCTGCGAGCGATGCGGCCGGGCGAGAAAGTTTGAGTTCCAGGT
ATCCCGAAGAGATGCTAGCATTCATTGAATCACGCAACTATCGCCAGCCA
CGATGTAAGACGATTTGATTTAACAACCGTGAAGCACGTTCAGTGGCCAC
GGTGGTGCTTGCAGCGTGTACGACTCACACTGTTTTGGCATTGCGTGTGA
ACCGTACTTGGTTTTGTGCACATCCGTGAAGGGTTCTGATACAGTCAGTC
GCAGTGGGTTGAGCAGGGAGCTATTTGTTTTTTGGCCGCGCAAGGTAACT
TGAAATATGATACATAAGCTCGTGGTAGTTGAAGCATTGCGTGGGCGGAC
TTGGCTTTTGGGAAGCGAAAAGCGCTGGAGGATCTCTCGCGCTAACAACA
AAAACGGTCGCGTTCGACGTTACTTCTGTAGAAACATGATGATTCGGCGG
TAGTATTTGCTTGTACGACCACCGATCGCCCCGGTGGTCTAGTGGCAGCC
TCGAAACCATCTAGCAGCAAAGTCATGAGTTCGAATCCCCATGGGGTGAA
AAATTTGGAAATTTGCGGGTGAAAGCGAAAAAGCTGAAAAGCTCGTGAGT
ACCAAACTTTGACATTAGCAACGTCGACGAGGGAAAGGGACGGCTGAACC
CTTCTCGCGATAAAAATTAAGGCACGCACCGCAGGAGGAAGGTGGGGCAA
AAAAAAAGTCATAAAAGGAAGAAAAAAACCCTGTGTTTACCCCCTCCTGT
GTGACCCCGGTTGGTTCTAGGGAAATTAAAATTATTACACTGAAAAAGTG
GTCTTCTGAATACACCGCAATGTGTAGTACACGTCTCACCTTGATTGGGG
GGACTGTCGCCAAAATAGATGGGACGAAAACACACACAACACACGCGCAT
TCCTATATTCCGCTCGGCTTACCGCAGCTTGTTCCTACAGGCATTTAATT
CATGATAGATTGTGCTTGCAAATCTCTTATTTCCAGGTGATGCCGCATCT
CTTGCACCACCTCGGCGTGGATGCGAATGCTAAAGCTCTGGACACAAAGG
CGGGGGTAAACGGCAGGCAAGGGCCTGGGGCAGCTCCCCCACTGATCACC
GGGGAGTGCATGGATTGGGGAACCCTAGCCGTGTATACATGCCCCGACAG
TTGTCCCTCGATCGCCCAAAGCCAAACAGGAGGCGGTGGAAGTGCTGGAG
CAGACAGAACGGGAAAGAGGTCTCCTGTAGTGGGGTACGTGGAGGAGTTT
GTGTGGCGCCAACCGCCTCCGTGACGGCGGGACTACCCTCTTGTTCTGTG
TTCACCGGTTAATTGGCGGTCTTGGTTCGGAACGTTGAATGAAAATAGCA
AATTGTTCGGCGAGACCGGGAGCTAACTGCAAAATCGAATTGATAGGAGT
CCAGCACAGCGTGGTCTTACGGAAAGGACAAGGGAGCCGCATGTCATGTT
TCCTCGAGAGGATGGGTGTCTGCTGCGTTTTAGAAGATGGACATGCGTAC
AAGCACACGCGACTGCTCACTTTGGCCACCCTTGCTTCATGAGCGAGTCT
TGGTGCTGGCAATGTCGCTGTTTCTGTGGAAGGATGTATCGCAAACAAAC
CTGCCTTTCTAGTGCTTTCTACTCCGTCGATGCCATGAGCCATGGGCTTG
ATTTGGACGACTCGAAGAAACAAACGCGGCAAGGTGGGGTGGGAGAGGGA
GAGGAATGCCACAGCGTATCGCCGACACGAGTGCGTGCGGCTGCGCATGC
CGCCAGAGGCCCGCCTGCTCCAAATCGTTGTCGACGAATTGACGCGTGAA
T
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Coding sequence (CDS) from alignment at P-lacustris_contig1242:39968..46818+

>mRNA_P-lacustris_contig1242.1770.1 ID=mRNA_P-lacustris_contig1242.1770.1|Name=mRNA_P-lacustris_contig1242.1770.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1578bp|location=Sequence derived from alignment at P-lacustris_contig1242:39968..46818+ (Pleurocladia lacustris SAG_25_93)
ATGACAACCAAGCGGGAGAAACATGACAACCAAGCGGGAGAAACGTGGAC
CGGTCGAGGACTTTGAGGACGATTACGAGGACTTCGACGATGACGAGGCC
TACGAGAGCTTTTGCCAGACGGCAGAAGAGAGCGGGGTGCAGCTCGGGAC
GGTGCTGCCGTTGGAAGGATCACTGGCGGAGAGCGTGCTGTTCAAAAACG
TGGATTGGCATGAATGGGACGGGGGCAAGGCTGGAGGGTGGCCGGTGGAC
CGGTCGAGGACTTTGAGGACGATTACGAGGACTTCGACGATGACGAGGCC
TACGAGAGCTTTTGCCAGACGGCAGAAGAGAGCGGGGTGCAGCTCGGGAC
GGTGCTGCCGTTGGAAGGATCACTGGCGGAGAGCGTGCTGTTCAAAAACG
TGGATTGGCATGAATGGGACGGGGGCAAGGCTGGAGGGTGGCCGGTGTGG
CTCAACCCTCGCGATCTCCCAGGTCCACAAGACATGCGCTGCGGCGAGTG
CTCTCAGCCTCTCTCATTTCTGGTTCAGCTGTACTGCCCCCTTGACCACG
AAGACGACGCGTTCCACCGTTGCCTGTACGTCTTTTGCTGCCCCAAGGTG
TGGCTCAACCCTCGCGATCTCCCAGGTCCACAAGACATGCGCTGCGGCGA
GTGCTCTCAGCCTCTCTCATTTCTGGTTCAGCTGTACTGCCCCCTTGACC
ACGAAGACGACGCGTTCCACCGTTGCCTGTACGTCTTTTGCTGCCCCAAG
GCTTCTTGCTCCAAGAATTCAAGCGTGAAGGCGTTGCGCTGCCAGCTTCG
CAGGGAGAACGACTTCTACCCTTACGAGCCAGACCACATGGCTTCTTGCT
CCAAGAATTCAAGCGTGAAGGCGTTGCGCTGCCAGCTTCGCAGGGAGAAC
GACTTCTACCCTTACGAGCCAGACCACATGGTGTCGATCTCAGCGAAGCA
GCAGGCGGGCGCGGACCCCGAGGCTTGGGGAGTACGGCTGTGCTGCGTGT
GCGGTCAGTTGGCGAAGAGCGCTTGCTCCAAGTGCAGGAGCGCGCGTTAC
TGCGGGCGTGAGCACCAATCGGAGCACTGGAAAAAGGGGGTCACAAGAAG
GTACAAGGTGTCGATCTCAGCGAAGCAGCAGGCGGGCGCGGACCCCGAGG
CTTGGGGAGTACGGCTGTGCTGCGTGTGCGGTCAGTTGGCGAAGAGCGCT
TGCTCCAAGTGCAGGAGCGCGCGTTACTGCGGGCGTGAGCACCAATCGGA
GCACTGGAAAAAGGGGGTCACAAGAAGGTACAAGAAACACAAAACGGAGC
GTTATCCGTGCTGGCACGCAAGGGTGCTACTGCGAATCCACTGCCATCGG
CCTCGGTGTTTCGCGAGTTTGAGGTGGAAGTTCGCCCGGAGCCGCCACCA
CCTCCGGTGGCACCAGATGGACGCACGCTAGAAACACAAAACGGAGCGTT
ATCCGTGCTGGCACGCAAGGGTGCTACTGCGAATCCACTGCCATCGGCCT
CGGTGTTTCGCGAGTTTGAGGTGGAAGTTCGCCCGGAGCCGCCACCACCT
CCGGTGGCACCAGATGGACGCACGCTAG
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