mRNA_P-lacustris_contig1242.1769.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1242.1769.1
Unique NamemRNA_P-lacustris_contig1242.1769.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1242.1769.1 vs. uniprot
Match: A0A6H5KL52_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL52_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 5.780e-116
Identity = 227/441 (51.47%), Postives = 248/441 (56.24%), Query Frame = 1 
Query:  160 MAAAPSAAAGETDSRALGRSHPEAEMVAATRGSDGTPVKLCVTNVYNSSSSEVVSLETTSTISDLKTLLQEKISSRPAPHQQRLIFRGKQC-EETQQLGHVLRG-----RHQHHY--------------------------------------------------------------------------------------------------------------------------QQQY--------------------------HTEVSTRAATRALGGNMPGPTRGGGVRDVTGPPPEGHIPAAGLGEDGEAGRGNVVDPAPRAPDIGREARRWFKMMLQCMGVIMVFGIDANGWVLAFLALGGLVVFLFRTGLLKEMLGGRREGGGLWKKLCTGATVVMEGGGILMDTRYFFSAFIFSLFPTWQPVRSPEAIAAEA 1020
            MAAA  A AGE+D+RA GRSHPEAEM+AA RGSDGTPVKL VT+VY+ SS +V SLETT TI DLK LLQE   SRPAP QQRLIFRGKQC EETQQLGH++RG     +H  H                                                                                                                           Q+QY                          +TEVS RAATRALGGNMPGP  GGGVRDVTG PPEGHIPAAGLG++GE  RGN+VDPAP APDIGREAR W KM+ QCMGVI+VFGIDA+GWVLA LALGGL  FLFRTGLLKE+LG  REGGGLWKKLCTGATV+ EGGGIL+D RYFFSAF FSLFP WQPVRSPEAIA +A
Sbjct:    1 MAAA--ATAGESDARAAGRSHPEAEMIAAARGSDGTPVKLFVTDVYHRSS-KVFSLETTITIGDLKRLLQEAFVSRPAPQQQRLIFRGKQCKEETQQLGHIMRGLDLSGQHNMHLIVSQPVEQELPAGGSTADVARTPTAQQSSLPQQRPXXXXXXXXXSLRSSSASPAAPHDTAXXXXXXXXXXSNERPECVQLSQTQLEQLQRXXXXXXXXXXXXXXXHRQRFNFLSAQSRALTQQRQYRHRTPTATYSSPXXXXXXXXXXXXXXYTEVSARAATRALGGNMPGPAGGGGVRDVTGAPPEGHIPAAGLGQEGEVWRGNLVDPAPNAPDIGREARSWLKMVFQCMGVILVFGIDADGWVLALLALGGLFAFLFRTGLLKEILGSGREGGGLWKKLCTGATVITEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAIAVQA 438
[Close]
BLAST of mRNA_P-lacustris_contig1242.1769.1 vs. uniprot
Match: D7G6U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U9_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.090e-49
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:  718 MMLQCMGVIMVFGIDANGWVLAFLALGGLVVFLFRTGLLKEMLGGRREGGGLWKKLCTGATVVMEGGGILMDTRYFFSAFIFSLFPTWQPVRSPEAI 1008
            M+ QCMGVI+VFGIDANGWVLA LALGGL  FLFRTGLLKEMLG  REGGGLWKKLCTGATV+MEGGGIL+D RYFFSAF FSLFP WQPVRSPEAI
Sbjct:    1 MVFQCMGVILVFGIDANGWVLALLALGGLFAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVIMEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAI 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1242.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL52_9PHAE5.780e-11651.47Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7G6U9_ECTSI2.090e-4986.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1242contigP-lacustris_contig1242:35494..38671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1479
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1242.1769.1prot_P-lacustris_contig1242.1769.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1242 35671..38512 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.9290528-UTR-P-lacustris_contig1242:35493..356701622815558.9290528-UTR-P-lacustris_contig1242:35493..35670Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 35494..35670 -
1693493611.858488-UTR-P-lacustris_contig1242:35493..356701693493611.858488-UTR-P-lacustris_contig1242:35493..35670Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 35494..35670 -
1622815558.976397-UTR-P-lacustris_contig1242:38512..386711622815558.976397-UTR-P-lacustris_contig1242:38512..38671Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 38513..38671 -
1693493611.903872-UTR-P-lacustris_contig1242:38512..386711693493611.903872-UTR-P-lacustris_contig1242:38512..38671Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1242 38513..38671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.9390016-CDS-P-lacustris_contig1242:35670..359951622815558.9390016-CDS-P-lacustris_contig1242:35670..35995Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 35671..35995 -
1693493611.86713-CDS-P-lacustris_contig1242:35670..359951693493611.86713-CDS-P-lacustris_contig1242:35670..35995Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 35671..35995 -
1622815558.94846-CDS-P-lacustris_contig1242:36611..371201622815558.94846-CDS-P-lacustris_contig1242:36611..37120Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 36612..37120 -
1693493611.8756025-CDS-P-lacustris_contig1242:36611..371201693493611.8756025-CDS-P-lacustris_contig1242:36611..37120Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 36612..37120 -
1622815558.9637887-CDS-P-lacustris_contig1242:38203..385121622815558.9637887-CDS-P-lacustris_contig1242:38203..38512Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 38204..38512 -
1693493611.8923562-CDS-P-lacustris_contig1242:38203..385121693493611.8923562-CDS-P-lacustris_contig1242:38203..38512Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1242 38204..38512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1242.1769.1

>prot_P-lacustris_contig1242.1769.1 ID=prot_P-lacustris_contig1242.1769.1|Name=mRNA_P-lacustris_contig1242.1769.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=381bp
MAAAPSAAAGETDSRALGRSHPEAEMVAATRGSDGTPVKLCVTNVYNSSS
SEVVSLETTSTISDLKTLLQEKISSRPAPHQQRLIFRGKQCEETQQLGHV
LRGRHQHHYQQQYHTEVSTRAATRALGGNMPGPTRGGGVRDVTGPPPEGH
IPAAGLGEDGEAGRGNVVDPAPRAPDIGREARRWFKMMLQCMGVIMVFGI
DANGWVLAFLALGGLVVFLFRTGLLKEMLGGRREGGGLWKKLCTGATVVM
EGGGILMDTRYFFSAFIFSLFPTWQPVRSPEAIAAEAAAQALAQAQAQEA
AVLAARRVQAVQAVQETADSAAAATAGRATNATPAEQGGEGADRATDAMS
VAQGADAATMNHRSMNASAAEEEVDPAALD*
back to top

mRNA from alignment at P-lacustris_contig1242:35494..38671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1242.1769.1 ID=mRNA_P-lacustris_contig1242.1769.1|Name=mRNA_P-lacustris_contig1242.1769.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3178bp|location=Sequence derived from alignment at P-lacustris_contig1242:35494..38671- (Pleurocladia lacustris SAG_25_93)
AGAGAGTAAAACCCTAAAATCCCCCAACAAAACAGGAAGGGGAGAGGGAA
GGAGAGGCGGCCACACTTGGGGTTGGGGTAAGGAGAGAAAAGGTACTGAT
CGAGTCGGCCCTTCTATTAACAAGCTTTTTGTTTGAGAGACTGACGGATA
TCAAACGTTATGGCGGCGGCACCTTCAGCAGCAGCTGGAGAAACAGATTC
GAGGGCGCTAGGGCGTTCGCACCCAGAGGCCGAAATGGTCGCTGCAACGA
GGGGTAGCGACGGCACGCCCGTCAAGCTTTGCGTAACCAACGTTTACAAC
AGCAGCAGCAGCGAGGTCGTGAGCCTTGAAACAACGAGTACCATCAGCGA
CCTGAAAACGTTGCTGCAGGAGAAGATCTCAAGCCGGCCTGCACCGCATC
AGCAGCGCCTGATTTTTCGGGGGAAACAATGCGAGGAGACCCAGCAGCTC
GGGCACGTGTTGAGAGGGGTGAGTCAATCACAACTTGGTTTGGGTTTACA
CGTTGTCAACACATTCGTCCATCGTCAAAGCTGCAGCTGTCAAAGCTGTC
ACGTACAATTTTCGAAGGCATGCTGTGTTCTTTTTGTGGCCGTGTGCGTC
TGTAGAGTAGATACACTCCGTGAACTTTGGTCAGTGATATCCACTCCTAG
TAGTCATCTGTGCAGAAGTTCTGCTGACATTCGGGACTCCGCCATATCTC
TGTGGAGTGCCATGTAGCTTATGCTCGGGTCAGACGGGATATCTCTATTT
TGTGTGCCGCAGACGGTGAGTATGCCGTCATCAGGATGTTTCACTAAGAG
GATTGGGATTGTTGTTGTGTTGTTGTCTTCACATTAAAAACCGTAGTATC
CAATTTTTGCAGCAACAGCTCCGCGTAAGATGTCGATGAAGTACATTCAA
CGCACAAATGTTGTCTGACGCTTGCTATTTCAGCGTCAGAGAGTCCCCCA
CCTTTTCAAGCTTTCAACTAGCTGGAGATTATATCTCTTTAGTTTTTCCT
TCTCCAATTGTATCTCCTCTGTCTCCCTCACGCTAATTGCAACTACCATC
ACCACCACCACCACCCCTCCTTGTCTCGATTCGATCGTTACCCTAACCCC
AGCTTGATCTTTCGAGTCGGCACACGATGCACCTCATCGTTTCACCTTCG
ATCGAACAACCCCCGCGAGCGACAGCAGCACGGCGGATGTCCAGCGAAAC
CCCATAGCACAGCCGTTGTCGCAGCAGCCACCGCAACAGCCGAGGCTGCC
GAGCAGAGGTAGCTCAGCTCATGTCGCACCTCCGGTTGACGCAGCAGCAA
CAGCAGCAACAGCTTCGAATTCGAACGGTCAACCCGAGCGTATTCACTTG
AGCCAGACGCAGCTGGGACAGCTCCAGTGGCAGTTCCAGCAAGCGTTGAG
AGAAAACCAGAAGGCATTGGATGAGCACAGGCAGAGATTCCATTTCCTGT
CGGCGCAATCAAGAGCCCTCGCGCGGCAGCAGCAGCAGTACCAGCACCGC
AGACCTACCGTAACCTACCGGCGTGACCGTGACCGTGACCCACTTCCGCA
GCGACACCAACACCATTACCAACAACAGTATCACACCGAAGTGTCTACAA
GGGCAGCGACCCGAGCTTTAGGCGGCAACATGCCGGGGCCAACCAGAGGG
GGAGGTGTGAGAGACGTGACGGGCCCCCCCCCCGAAGGACATATCCCTGC
GGCGGGGCTCGGGGAGGACGGCGAGGCCGGAAGGGGAAACGTAGTGGATC
CTGCTCCCCGCGCTCCCGACATCGGCAGAGAAGCGCGACGGTGGTTCAAG
ATGATGCTTCAGTGCATGGGGGTGATCATGGTGTTCGGTATTGACGCAAA
CGGATGGGTGCTGGCCTTTCTGGCACTGGGAGGGCTCGTAGTGTTTCTGT
TCAGGACGGGCCTGTTGAAGGAGATGCTGGGAGGTAGGCGGGAGGGGGGA
GGGCTGTGGAAGAAGCTGTGCACCGGGGCGACGGTCGTCATGGAGGGCGG
GGGGATACTGATGGACACGCGATACTTCTTCTCTGCCTTCATTTTTAGCC
TATTTCCTACGTGAGTCATAGCAGCGCTCCGTTTACAAGTCAGGGAAAAT
GCACACCGGAGCAATAGCATCAGCAGCGTAGCCTGAGGTCTGATCTGTGT
TTATGTTCGCGTGTACAATGAGGCAATTAGTTCACCCTGTCGCGAAGTGG
GTCCTGTGTGCGAGCCTTTCTGGTTGGTGTACGGGGTCAATTACGCGCGC
TGACATTTTATCGCAGGTCGTAGGTCCTTCCATGTCGGATTCGGGAAACA
TTTCAATCATCCCCTAGGCGACGAGGCGGAAGTGGGATACGAAACAAGGG
AACGAAAGATAATTCTCGTTCTCGCTTAAACCTACGCGTTGTCTCAGGAG
GGTTGACGAAAGCTAAGGGGGTGCCAATGTGCCAATGCCCAGAGGGGTAG
TTTTGGAAACATCTCGAGAGTTTTCCTTCTGCTATATTGATCGGTTTTCT
CAACCTATTGGTCGTGGAGCTCTACTTGTATCATGCTTCGAGAGTAGGGC
TAGGGGGGGTGCGATTACCAGCAGTATTTCCGGACCGTTACACTACGACT
TGTGATTCGCGTCTCCGCCTGCGCTTAGCGTTGTCACGTCTCTTGCTCTT
GTTCATGTTCATCATGTCATGTTAAGGTGGCAACCAGTGCGGTCTCCGGA
GGCCATCGCGGCGGAAGCAGCAGCTCAGGCGCTAGCCCAGGCACAGGCAC
AAGAAGCCGCCGTGCTCGCAGCGCGTCGAGTACAAGCGGTGCAGGCTGTG
CAGGAAACTGCCGATTCGGCAGCAGCAGCAACAGCAGGTCGGGCCACAAA
CGCGACGCCCGCCGAGCAAGGTGGCGAGGGAGCGGATAGAGCCACGGATG
CGATGTCGGTAGCGCAGGGAGCGGATGCAGCGACGATGAATCATAGGTCC
ATGAACGCGTCGGCCGCGGAGGAAGAGGTGGACCCTGCGGCTCTGGACTG
ATATGGCTGGTTACTGTGCCTAACCTTGTTAGTATTTCAGCCAACCACCC
CGTATCCATCCGTGGTTACTGTGCCTAACCTTGTAGAAAGCACTTTTTGT
TTGGGGGAGGGACGAGGGGGCTCGGTGGTGACCTGGGTGGAAAAAGGGCT
CCTGTTTGGAGGTACACCGTAGTGGTAC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1242:35494..38671-

>mRNA_P-lacustris_contig1242.1769.1 ID=mRNA_P-lacustris_contig1242.1769.1|Name=mRNA_P-lacustris_contig1242.1769.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2286bp|location=Sequence derived from alignment at P-lacustris_contig1242:35494..38671- (Pleurocladia lacustris SAG_25_93)
ATGGCGGCGGCACCTTCAGCAGCAGCTGGAGAAACAGATTCGAGGGCGCT
AGGGCGTTCGCACCCAGAGGCCGAAATGGTCGCTGCAACGAGGGGTAGCG
ACGGCACGCCCGTCAAGCTTTGCGTAACCAACGTTTACAACAGCAGCAGC
AGCGAGGTCGTGAGCCTTGAAACAACGAGTACCATCAGCGACCTGAAAAC
GTTGCTGCAGGAGAAGATCTCAAGCCGGCCTGCACCGCATCAGCAGCGCC
TGATTTTTCGGGGGAAACAATGCGAGGAGACCCAGCAGCTCGGGCACGTG
TTGAGAGGGATGGCGGCGGCACCTTCAGCAGCAGCTGGAGAAACAGATTC
GAGGGCGCTAGGGCGTTCGCACCCAGAGGCCGAAATGGTCGCTGCAACGA
GGGGTAGCGACGGCACGCCCGTCAAGCTTTGCGTAACCAACGTTTACAAC
AGCAGCAGCAGCGAGGTCGTGAGCCTTGAAACAACGAGTACCATCAGCGA
CCTGAAAACGTTGCTGCAGGAGAAGATCTCAAGCCGGCCTGCACCGCATC
AGCAGCGCCTGATTTTTCGGGGGAAACAATGCGAGGAGACCCAGCAGCTC
GGGCACGTGTTGAGAGGGCGACACCAACACCATTACCAACAACAGTATCA
CACCGAAGTGTCTACAAGGGCAGCGACCCGAGCTTTAGGCGGCAACATGC
CGGGGCCAACCAGAGGGGGAGGTGTGAGAGACGTGACGGGCCCCCCCCCC
GAAGGACATATCCCTGCGGCGGGGCTCGGGGAGGACGGCGAGGCCGGAAG
GGGAAACGTAGTGGATCCTGCTCCCCGCGCTCCCGACATCGGCAGAGAAG
CGCGACGGTGGTTCAAGATGATGCTTCAGTGCATGGGGGTGATCATGGTG
TTCGGTATTGACGCAAACGGATGGGTGCTGGCCTTTCTGGCACTGGGAGG
GCTCGTAGTGTTTCTGTTCAGGACGGGCCTGTTGAAGGAGATGCTGGGAG
GTAGGCGGGAGGGGGGAGGGCTGTGGAAGAAGCTGTGCACCGGGGCGACG
GTCGTCATGGAGGGCGGGGGGATACTGATGGACACGCGATACTTCTTCTC
TGCCTTCATTTTTAGCCTATTTCCTACCGACACCAACACCATTACCAACA
ACAGTATCACACCGAAGTGTCTACAAGGGCAGCGACCCGAGCTTTAGGCG
GCAACATGCCGGGGCCAACCAGAGGGGGAGGTGTGAGAGACGTGACGGGC
CCCCCCCCCGAAGGACATATCCCTGCGGCGGGGCTCGGGGAGGACGGCGA
GGCCGGAAGGGGAAACGTAGTGGATCCTGCTCCCCGCGCTCCCGACATCG
GCAGAGAAGCGCGACGGTGGTTCAAGATGATGCTTCAGTGCATGGGGGTG
ATCATGGTGTTCGGTATTGACGCAAACGGATGGGTGCTGGCCTTTCTGGC
ACTGGGAGGGCTCGTAGTGTTTCTGTTCAGGACGGGCCTGTTGAAGGAGA
TGCTGGGAGGTAGGCGGGAGGGGGGAGGGCTGTGGAAGAAGCTGTGCACC
GGGGCGACGGTCGTCATGGAGGGCGGGGGGATACTGATGGACACGCGATA
CTTCTTCTCTGCCTTCATTTTTAGCCTATTTCCTACGTGGCAACCAGTGC
GGTCTCCGGAGGCCATCGCGGCGGAAGCAGCAGCTCAGGCGCTAGCCCAG
GCACAGGCACAAGAAGCCGCCGTGCTCGCAGCGCGTCGAGTACAAGCGGT
GCAGGCTGTGCAGGAAACTGCCGATTCGGCAGCAGCAGCAACAGCAGGTC
GGGCCACAAACGCGACGCCCGCCGAGCAAGGTGGCGAGGGAGCGGATAGA
GCCACGGATGCGATGTCGGTAGCGCAGGGAGCGGATGCAGCGACGATGAA
TCATAGGTCCATGAACGCGTCGGCCGCGGAGGAAGAGGTGGACCCTGCGG
CTCTGGACTGAGTGGCAACCAGTGCGGTCTCCGGAGGCCATCGCGGCGGA
AGCAGCAGCTCAGGCGCTAGCCCAGGCACAGGCACAAGAAGCCGCCGTGC
TCGCAGCGCGTCGAGTACAAGCGGTGCAGGCTGTGCAGGAAACTGCCGAT
TCGGCAGCAGCAGCAACAGCAGGTCGGGCCACAAACGCGACGCCCGCCGA
GCAAGGTGGCGAGGGAGCGGATAGAGCCACGGATGCGATGTCGGTAGCGC
AGGGAGCGGATGCAGCGACGATGAATCATAGGTCCATGAACGCGTCGGCC
GCGGAGGAAGAGGTGGACCCTGCGGCTCTGGACTGA
back to top