mRNA_P-lacustris_contig124.1746.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig124.1746.1
Unique NamemRNA_P-lacustris_contig124.1746.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: D8LU90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU90_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 5.430e-127
Identity = 191/254 (75.20%), Postives = 213/254 (83.86%), Query Frame = 3 
Query:  936 VWTMWNDLPEITKDLGEDSPARKVSGDDARAEYPVGPPYLMHVRDWARILDLWVALSPKVYRRHPGILAEMYGFCIAAAHLGLRHRVAYGLMVSDVKMVNHEGWPLVDPLGPASCDPTVVDHWRGSLPPIVHYCQMYRVGTFMWGKRHQSHYNFFSCTSDSLELPPADYLKGPMAQVRVHPR-GRTPTPQ----EKVPAMTGIRQGYAMCAVLRAMNEALASYKSRYCRPEEVSGGVRRFTDLDREQLEADEYS 1682
            VWT W+DL EIT++LGEDSPAR VS ++A + YPVGPPY+MH RDWAR+LDLWVALSPKV++ HPGILAEMYGFCIAAAH+GLRHRVAYGLMVSD  M   EGWPLVD +G + CDP  VDH RGSLPPIVHYCQMYRVGTFMWGKRH++H  FF C SDSLELPP DYL GPMA+VRVHPR GR    +    E+VPA+TG+RQGYAMCAVLRAMNEAL  YK RYC   +VSGGVRRFTDL REQL+ADEYS
Sbjct:  236 VWTTWDDLREITENLGEDSPARAVSTEEAISGYPVGPPYMMHPRDWARVLDLWVALSPKVHKGHPGILAEMYGFCIAAAHIGLRHRVAYGLMVSDAGMPGKEGWPLVDQMGTSVCDPESVDHRRGSLPPIVHYCQMYRVGTFMWGKRHRTHQTFFGCHSDSLELPPPDYLAGPMAEVRVHPRRGRAQLGEQAEPERVPAVTGMRQGYAMCAVLRAMNEALVKYKYRYCERGDVSGGVRRFTDLSREQLDADEYS 489
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A836CDP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP3_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.960e-45
Identity = 88/174 (50.57%), Postives = 113/174 (64.94%), Query Frame = 1 
Query:  433 GIGHGIGTAPTSVDDIHVVFSTDCSPYQNYQAIVLFHSAEAVGQKGPVTRVASGCTREETVELQDLMDKQPERFRVHFTPDYSFDPETGERFMFYNKPNGMAHFLKNADPPVQEAVVALVDPDMIFMSPLSPNVGNVDKMLWHKRDQELGPD------WVIEGAPVGQFYGLGG 936
            GI  GI + P   DDIH+VFSTDCS YQN+Q+++ F+SA   GQKGPVTR+ASGC+  +  EL+D+    P+R RVHFTPD+S D  TG R+ +YNKP  + H+L +A PPV EAVVAL+DPDM  + PL P V +  +    +R     P       W+ EG P GQ Y LGG
Sbjct:    2 GIAPGIPSVPRHYDDIHIVFSTDCSDYQNWQSLLFFYSAARAGQKGPVTRLASGCSEAQMAELRDVHALMPQRHRVHFTPDFSLDARTGLRYPYYNKPRALRHWLAHAAPPVAEAVVALLDPDMAMLRPLRPYVDDDPETFPRRRGGPGQPPVRGVEPWITEGHPAGQLYALGG 175
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A835ZI64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI64_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.680e-37
Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 1 
Query:  445 GIGTAPTSVDDIHVVFSTDCSPYQNYQAIVLFHSAEAVGQKGPVTRVASGCTREETVELQDLMDKQPERFRVHFTPDYSFDPETGERFMFYNKPNGMAHFLKNADPPVQEAVVALVDPDMIFMSPLSPNVGNVDKMLWHKRDQEL----GPDWVIEGAPVGQFYGLG 933
            GI   P    D+HVVFST+CS YQ++Q+++LF SA   G KGP+TR+A GC+ E+  E+  L    P   RVHFTPDYS    TG R+ +YNKP GM HFL  A+PP+   +VA++DPD +FM PL+P +     +L  +         G   + EG P  Q YGLG
Sbjct:   33 GITAVPRDEHDVHVVFSTECSSYQDWQSLLLFFSATRAGHKGPITRLAGGCSPEKQTEILKLHQHMPPHHRVHFTPDYSVISSTGHRYPYYNKPFGMQHFLATANPPITNTIVAVLDPDQVFMKPLTPFLDPDTTILADRNTMPPLRFNGMPVITEGYPASQRYGLG 199
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A7S3HPB4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPB4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.790e-35
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 1 
Query:  457 APTSVDDIHVVFSTDCSPYQNYQAIVLFHSAEAVGQKGPVTRVASGCTREETVELQDLMDKQPERFRVHFTPDYSFDPETGERFMFYNKPNGMAHFLKNADPPVQ-EAVVALVDPDMIFMSPLSPNVGNVDKMLWHK--RDQELGPDWVIEGAPVGQFYGLG 933
            AP     +HVVFSTDCS YQN+Q ++LFHSA+ VGQKG +TR+ASGC   +  EL  L  K   ++  HFTPD+  D +T +++ FYNKP GM H+L+NA P +    ++AL+DPDMIF+ PL P +     +L  +  +D+E+  D +  G PV Q YGLG
Sbjct:   80 APEEDGQMHVVFSTDCSGYQNWQTLLLFHSAQVVGQKGRITRIASGCDATQQAELTALYKKLYPKYGAHFTPDFKNDAKTNKKYDFYNKPWGMKHWLENAVPAIPPNTIIALLDPDMIFVRPLGPQIRGDISLLTDRGIKDEEI-VDVIGLGHPVSQTYGLG 240
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A7S4N1U4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1U4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.640e-33
Identity = 84/226 (37.17%), Postives = 121/226 (53.54%), Query Frame = 3 
Query:  942 TMWNDLPEITKDLGEDSPARKVSGDDARAEYPVGPPYLMHVRDWARILDLWVALSPKVYRRHPGILAEMYGFCIAAAHLGLRHRVAYGLMVSDVKMVNHEGWPLVDPLGPASCDPTVVD---HWRGSLPPIVHYCQMYRVGTFMWGKRHQSHYNFFSCTSDSLELPPADYLKGPMAQVRVHPRGRTPTPQEKVPAMTGI--RQGYAMCAVLRAMNEALASYKSRYC 1604
            T W +  ++T   G +SPA +VS DD R  YPVGPPYL   RD   I   W   +P+V+ ++P +LAEMY +CIAAAHL L H+    LMVS+      EGW  V+ + P+     +VD   H + +LP ++H CQ Y VG +++ KR   H +FF+C    LE+PP D  K    +++       P  Q KV     +     + MC  +  +NEA   +K + C
Sbjct:  149 TQWREF-DLTAIAGANSPALRVSKDDGRDFYPVGPPYLGTARDMHAIATKWSEFAPRVHAQYPHLLAEMYAYCIAAAHLKLPHQKINSLMVSN-SGTGGEGWSFVEKIPPSEVCAFMVDGPDHSKYALPSVMHLCQRYIVGPWLFAKRKMPH-DFFTCEHQLLEVPPPDLAKRFKYKIK-------PAEQVKVDISEKVAHEDAFMMCGTIGYLNEAGTYFKRKGC 364
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: W7T637_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T637_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.620e-32
Identity = 80/183 (43.72%), Postives = 117/183 (63.93%), Query Frame = 1 
Query:  394 SSDPTSISPLVWRGIGHGIGTAPTSVDDIHVVFSTDCSPYQNYQAIVLFHSAEAVGQKGPVTRVASGCTREETVELQDLMDKQPERFRVHFTPDYSFDPETGERFMFYNKPNGMAHFLKN-ADPPVQEAVVALVDPDMIFMSPLSPNVGNVDKMLWHK--RDQELGPDWVIEGAPVGQFYGLG 933
            S  P    P +W+        AP   D +++VFSTDCS YQN+Q++ +F +A+AV Q G + R+ASGC+  E  E+Q L D  P RF+VHFTP++  D ++G+ + FYNKP G+ H+L + A P  ++A+VAL+DPD +FM PL+  V   D++L+     D +L  D V EG PV Q+YG+G
Sbjct:   68 SVPPAKNDPSMWQW-----NEAPED-DRLYLVFSTDCSGYQNWQSLAVFFTADAVRQPGTIVRIASGCSEAEKKEVQKLYDTFPVRFQVHFTPNFKKDAKSGKSYDFYNKPYGLQHWLDSKAAPKHKDAIVALLDPDFLFMRPLTYKVKQ-DRVLYSPPVTDGDL-IDEVREGHPVAQYYGIG 242
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A7S4N8A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8A3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.800e-32
Identity = 88/227 (38.77%), Postives = 116/227 (51.10%), Query Frame = 3 
Query:  936 VWTMWNDLPEITKDLGEDSPARKVSGDDARAEYPVGPPYLMHVRDWARILDLWVALSPKVYRRHPGILAEMYGFCIAAAHLGLRHRVAYGLMVSDVK-MVNHEGWPLVDPLGPASCDPTVVDHWRGSLPPIVHYCQMYRVGTFMWGKR---HQSHYNFFSCTSDSLELPPADYLKGPMAQVRVHPRGRTPTPQEKVPAMTGIRQGYAMCAVLRAMNEALASYKSRYC 1604
             W  +N    I++  GE SPARKV+ D+A   YPVGPPY+   RD  +I + W   +P+VY  +P +LAEMYG+ IAAAHL L H     L VS      N EGW  +D L    C     +  R SLP I+HYCQ Y +  + +GKR       Y F SC S  L  PP D    P A+ ++ P G+      +V      R+ Y +CA+  A N A   +K   C
Sbjct:   98 TWITFN----ISRIAGEQSPARKVTQDEALDFYPVGPPYIATGRDMYQIAEKWKDFTPRVYDEYPKLLAEMYGYSIAAAHLQLPHIKVEHLGVSQTNAQPNLEGWSDIDNLEDDFCTDPFPE--RNSLPSILHYCQRYMISEWFFGKRKIFQNLPYQFLSCGSPLLATPPKDL---PKARYQIKPPGQGEK-NYRVSREELKREAYMICAITNATNAAALHFKDHAC 314
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A7S4ALJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALJ6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.230e-32
Identity = 78/213 (36.62%), Postives = 116/213 (54.46%), Query Frame = 3 
Query:  966 ITKDLGEDSPARKVSGDDARAEYPVGPPYLMHVRDWARILDLWVALSPKVYRRHPGILAEMYGFCIAAAHLGLRHRVAYGLMVSDVKMVNHEGWPLVDPLGPASCDPTVVDHWRGSLPPIVHYCQMYRVGTFMWGKRHQSHYNFFSCTSDSLELPPADYLKGPMAQVRVHPRGRTPTPQEKVPAMTGIRQGYAMCAVLRAMNEALASYKSRYC 1604
            IT+ +G DSP   V+ +DAR  +  GPPY M  RD  RI   W    P +++ HP  +AEMYG+C+AAAHLGLRH++A G+M+S+V M   EGW  + P  P +CD   V  +  ++P ++H+CQ Y +G F   K +    +  SC    LELP  D L+        +  G      +    +   R  + +C++  A+NEA   YK ++C
Sbjct:  283 ITEIVGPDSPVHDVTEEDARLVFAAGPPYWMTARDAFRISYKWAEFLPSIFKHHPVFMAEMYGYCMAAAHLGLRHQMARGMMISNVGMTAGEGWAFL-PKDPKACD---VARYAETVPHVLHFCQRYSIGDFFINK-YLFPTDILSCEHPLLELPSMDMLED--TWYSHYGDGTVDQWGKSQDDIKRYRNAFMICSLFPAVNEAAKFYKDQHC 488
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A7S4JEG4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JEG4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.620e-32
Identity = 84/226 (37.17%), Postives = 121/226 (53.54%), Query Frame = 3 
Query:  942 TMWNDLPEITKDLGEDSPARKVSGDDARAEYPVGPPYLMHVRDWARILDLWVALSPKVYRRHPGILAEMYGFCIAAAHLGLRHRVAYGLMVSDVKMVNHEGWPLVDPLGPASCDPTVVD---HWRGSLPPIVHYCQMYRVGTFMWGKRHQSHYNFFSCTSDSLELPPADYLKGPMAQVRVHPRGRTPTPQEKVPAMTGI--RQGYAMCAVLRAMNEALASYKSRYC 1604
            T W +  ++T   G +SPA +VS DD R  YPVGPPYL   RD   I   W   +P+V+ ++P +LAEMY +CIAAAHL L H+    LMVS+      EGW  V+ + P+     +VD   H + +LP ++H CQ Y VG +++ KR   H +FF+C    LE+PP D  K    +++       P  Q KV     +     + MC  +  +NEA   +K + C
Sbjct:  323 TQWREF-DLTAIAGANSPALRVSKDDGRDFYPVGPPYLGTARDMHAIATKWSEFAPRVHAQYPHLLAEMYAYCIAAAHLKLPHQKINSLMVSN-SGTGGEGWSFVEKIPPSEVCAFMVDGPDHSKYALPSVMHLCQRYIVGPWLFAKRKMPH-DFFTCEHQLLEVPPPDLAKRFKYKIK-------PAEQVKVDISEKVAHEDAFMMCGTIGYLNEAGTYFKRKGC 538
[Close]
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Match: A0A482SH38_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH38_9ARCH)

HSP 1 Score: 134 bits (336), Expect = 2.670e-31
Identity = 72/162 (44.44%), Postives = 101/162 (62.35%), Query Frame = 1 
Query:  460 PTSVDDIHVVFSTDCSPYQNYQAIVLFHSAEAVGQKGPVTRVASGCTREETVELQDLMDK-QPERFRVHFTPDYSFDPETGERFMFYNKPNGMAHFLKNADPPVQE-AVVALVDPDMIFMSPLSPNVGNVDKMLWHKRDQELGPDWVIEGAPVGQFYGLGGC 939
            PT+    + VFSTDC+PYQ++Q+I LFHSA  V Q G +TR+ASGC + +   L  L      +   VHFTPD+  D ++   + FYNKP G+ H+L+ A+PP+ E A++AL+DPDM+F+ PL+P V     ++  K       + V EG PV Q YGLG C
Sbjct:   99 PTNHAHFYTVFSTDCTPYQDWQSIFLFHSALRVKQPGIITRIASGCDQAQQEHLTTLYKTLYGDYCTVHFTPDFKKDAQSQRSYDFYNKPWGIKHWLEYANPPIPEDAIIALLDPDMVFLRPLTPVVAGSPYIVRRKFPMTEMIEEVGEGRPVSQTYGLGMC 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig124.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU90_ECTSI5.430e-12775.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDP3_9STRA1.960e-4550.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZI64_9STRA5.680e-3745.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HPB4_9STRA4.790e-3547.53Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4N1U4_9STRA3.640e-3337.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
W7T637_9STRA1.620e-3243.72Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4N8A3_9STRA1.800e-3238.77Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4ALJ6_9STRA5.230e-3236.62Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4JEG4_9STRA5.620e-3237.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A482SH38_9ARCH2.670e-3144.44Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig124contigP-lacustris_contig124:89288..97072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue4.4e-87
Seed eggNOG ortholog2880.D8LU90
KEGG koko:K20781
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMIY@1,2QQG8@2759
CAZyGT96
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons7
Model size2690
Cds size969
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig124.1746.1prot_P-lacustris_contig124.1746.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig124 89288..92074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.3444014-CDS-P-lacustris_contig124:89287..898391622815555.3444014-CDS-P-lacustris_contig124:89287..89839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 89288..89839 +
1693493609.3392882-CDS-P-lacustris_contig124:89287..898391693493609.3392882-CDS-P-lacustris_contig124:89287..89839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 89288..89839 +
1622815555.353793-CDS-P-lacustris_contig124:90420..905721622815555.353793-CDS-P-lacustris_contig124:90420..90572Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 90421..90572 +
1693493609.3516161-CDS-P-lacustris_contig124:90420..905721693493609.3516161-CDS-P-lacustris_contig124:90420..90572Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 90421..90572 +
1622815555.3632166-CDS-P-lacustris_contig124:91014..911451622815555.3632166-CDS-P-lacustris_contig124:91014..91145Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 91015..91145 +
1693493609.359515-CDS-P-lacustris_contig124:91014..911451693493609.359515-CDS-P-lacustris_contig124:91014..91145Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 91015..91145 +
1622815555.374949-CDS-P-lacustris_contig124:91940..920741622815555.374949-CDS-P-lacustris_contig124:91940..92074Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 91941..92074 +
1693493609.368903-CDS-P-lacustris_contig124:91940..920741693493609.368903-CDS-P-lacustris_contig124:91940..92074Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 91941..92074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.3884408-UTR-P-lacustris_contig124:92074..921091622815555.3884408-UTR-P-lacustris_contig124:92074..92109Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 92075..92109 +
1693493609.3775709-UTR-P-lacustris_contig124:92074..921091693493609.3775709-UTR-P-lacustris_contig124:92074..92109Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 92075..92109 +
1622815555.4014635-UTR-P-lacustris_contig124:93706..938821622815555.4014635-UTR-P-lacustris_contig124:93706..93882Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 93707..93882 +
1693493609.3859365-UTR-P-lacustris_contig124:93706..938821693493609.3859365-UTR-P-lacustris_contig124:93706..93882Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 93707..93882 +
1622815555.4160895-UTR-P-lacustris_contig124:94785..949451622815555.4160895-UTR-P-lacustris_contig124:94785..94945Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 94786..94945 +
1693493609.396916-UTR-P-lacustris_contig124:94785..949451693493609.396916-UTR-P-lacustris_contig124:94785..94945Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 94786..94945 +
1622815555.426257-UTR-P-lacustris_contig124:95722..970721622815555.426257-UTR-P-lacustris_contig124:95722..97072Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 95723..97072 +
1693493609.4065738-UTR-P-lacustris_contig124:95722..970721693493609.4065738-UTR-P-lacustris_contig124:95722..97072Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 95723..97072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig124.1746.1

>prot_P-lacustris_contig124.1746.1 ID=prot_P-lacustris_contig124.1746.1|Name=mRNA_P-lacustris_contig124.1746.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=323bp
DPLCLDCASGLGEAGAHRARFPEALSALSCLLELSGLCLCCSRSLSCCSP
RKSASRVSNTYLALVSLCRGSAGHFSTMRQRRRSKLELDRLENGSVRPIR
RYLLLTVALLSLVLTAWLTFRPLASGGAQRISSDPTSISPLVWRGIGHGI
GTAPTSVDDIHVVFSTDCSPYQNYQAIVLFHSAEAVGQKGPVTRVASGCT
REETVELQDLMDKQPERFRVHFTPDYSFDPETGERFMFYNKPNGMAHFLK
NADPPVQEAVVALVDPDMIFMSPLSPNVGNVDKMLWHKRDQELGPDWVIE
GAPVGQFYGLGGCGRCGMTCRR*
back to top

mRNA from alignment at P-lacustris_contig124:89288..97072+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig124.1746.1 ID=mRNA_P-lacustris_contig124.1746.1|Name=mRNA_P-lacustris_contig124.1746.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7785bp|location=Sequence derived from alignment at P-lacustris_contig124:89288..97072+ (Pleurocladia lacustris SAG_25_93)
GACCCCCTGTGCTTGGATTGTGCAAGTGGATTGGGCGAGGCCGGAGCACA
CAGAGCCAGGTTTCCTGAGGCACTTTCTGCTCTCAGCTGTCTACTCGAGC
TCTCTGGCCTCTGCTTATGTTGCTCCCGCTCTCTCAGCTGTTGCTCGCCG
CGAAAAAGTGCGTCCAGAGTGAGCAATACGTACCTGGCGCTTGTCTCCCT
CTGCCGCGGGTCTGCTGGGCACTTTTCTACGATGCGGCAGCGGCGCCGCT
CAAAGCTTGAGTTGGATCGCCTCGAAAATGGGTCTGTGCGGCCTATCCGA
CGATATCTTCTGCTGACGGTAGCTCTGCTCTCCCTCGTCCTCACAGCGTG
GCTGACGTTTCGTCCATTGGCCTCCGGAGGGGCACAGAGAATATCTTCTG
ATCCCACTTCAATTTCTCCGCTAGTTTGGAGAGGTATCGGACACGGGATA
GGGACAGCCCCGACGTCAGTGGACGACATCCACGTGGTGTTTTCGACGGA
CTGCTCGCCCTATCAAAACTATCAAGCGATTGTGCTGTTTCACAGCGCAG
AGGTAACTATGTCATTTTGATGGTTCGCATCTGTGTACAACCATCTTGTG
TCTAGTCCCGTCCTGGAACAACAAGTCTACAGCAGTGATAACTAACCGCC
TGTTGGGTAGGAGGAGGCCCATTCAATGTTTCGGCGCAGACCCAGTTTCA
TGTCTAGAGTAGACATAATAATCTTAATCTGTTGCGAGAAATGGTTTTTG
TTACAGAGGGAGACAAGTGGCATGACAGAAGGTCGCAAAAGGGTCCAAAT
CGGAAACAATCGTGTACTACAATCCTATCTAGGGATGACGTGTGTTGATA
TTTTGGAGTCCTCTTCCATCCAACAGTGTAGGGGCGAGAGAGACGGTTCA
CAGAATGAAGTGATGAAGACCTCTGCATGTTGTTGAGCCCCCCCCCGCAC
CAACTCTAGTGTCTTCAGGCTAAGACCACGCACTTTTCAACACGACCCCT
CCCGCAGCCTCCCGCCCACACACCCTCGGCATGACGCCCTTTGCCTTGTC
TCTTTCTCATCCCCTTTCTGAGAAGCACACATTCCTTTCCGTCATGTCAA
AATCGGCTGTGTTTATGGGTAACGTGCTTATAGGCTGTTGGGCAGAAGGG
CCCGGTGACCCGCGTGGCGAGCGGCTGCACGAGGGAAGAAACGGTGGAGC
TGCAGGATCTCATGGACAAGCAGCCGGAGCGATTCAGGGTGCACTTCACC
CCGGACTACAGCTTCGACCCCGAGACTGGAGAACGGTAAGCGGCCAGCGG
GACAGGCCCGCATTACGCCCTCGTCGTTGTTGTTTTTGCTCTTCGACGAA
AGAGGCGGGAGAAACAGAGGGGAGAGGGACGACAGACAGAGAAACGGAGG
AGGAGAGGCCACAGATATGATGGAGAAGTGGAGACGCTTTTGATTGTTGG
CCGGAACCTTGGCGTGAAGCAACCTGATGGATGTTGGTGTTTGGTGTTTA
GAGTTGGAGAAGCTTTTGATTGTCGGCCGGAACCTTGGCGTGAAGCAACC
TGATGGATGTTGGTGTTTGGTGTTTAGAGTTGACGGTTCAAAAGTTATCT
GTCGTGCGGCTGCTATGCCGTGTCTTGTGTTGCCGCCCCCTTCTCAGTAG
GAGCATCGTGAATAGCACCCCCTCCCTCCCCCACCCCTGCGTGCACCTCA
CTCGTATGGGTCACCGTAACCGTTAAGATTCATGTTCTACAACAAGCCCA
ACGGTATGGCCCACTTCTTGAAGAACGCCGACCCTCCAGTGCAGGAGGCG
GTGGTCGCTCTCGTCGATCCAGACATGATTTTCATGTCCCCGCTTTCGCC
GAACGTCGGTGAGAGGACAACGAGCTTGAGGGAGCGAGGGTGGGAGGGGT
GGAGGGGGAGGGGGAGGGATGGAGGAGCGAGCCGAATAGGAGGGATAATA
GAGATTAAAAGGCTTGGTTTCGTGGCGCCTTGTTGCCGGTGGTGTCGCTC
TCTTTGCTCTTTGCTCTTTGCTCTTTGCTCTTTGCTTGCTGTTGTTGTGT
TGTTGTGTTGTTGTTTTGTCGTTTGGTAGTGTGTTCGTTGTTAGTTGTTG
GTGTATCAAAGTGATTCCATTGATATGTCGATGTTGAGTTTGACGTTGGT
GTTGTGGGCATTTGATGCTGTTGATGTTGGATGTTGACATGGACGTTAGT
TGCCAGCGCCATCGTGGCGTGAGTAGAGACGTTCTGGCTGAGTGCACATT
TAGCTCTTCTGCTCTTCTGCACGAAGCGATGTTCGTCACCAGTAAGATAA
CGCCTGGCACCCTGGTCGTGCTTTGCGAGAGCTTAGCTTTTGGGGACTTT
CTGCACACGGCAGACCATCCCGCGAAACGTTGTACGGTAGCCCTATGGTT
CTGTCCACGACTGCACTTTACACACCCGGGCCGCCCAAGACTTTGCGTAG
CGTGTTTGCAACATCCGATCTACCACCCCTGCCCAACGGTTAGAATCCCG
GATGAGAGCTGCGTCCTTGGTGACGTCCGCTGTAGGTAAACGCCGAGCTG
GAGCTATTGCAGACGTCACCTCTTGACCCCTCCCCCCACAAGATGAAAGG
TGACGACTCGAATCCCCCTCACCCCCTCCCCCAAATTTTCTCTCTTAATT
CAGGCAACGTCGATAAGATGCTGTGGCACAAGCGAGACCAGGAGTTGGGG
CCGGACTGGGTGATTGAAGGGGCACCCGTCGGGCAGTTCTACGGGCTAGG
AGGGTGTGGACGATGTGGAATGACCTGCCGGAGATAACCAAAGACTTGGG
GGAAGATTCTCCCGCGAGAAAGGTGAGTTTGGTTGGTTTTCGTTGGTTTT
CGCATGGTGTTTCGGTGCGCTTGGCTTACACCGTACTCTGCAGGCCATGG
GTGATGAGGGCAGGTTAGGACCTCGCTGATTTCCACGGCCTTGCGTGAAG
CTTAAGGCCCCTGACGACGCTTGACCGCCCCTCGCCTTTCAGCGGAAGAC
ACCCGGAGTGCCGGTCGGGGCCAAGTCATGCCGTGTTGTGTTTGTGAAAA
GTGTAAAACAACCAACGGCCAGAGCTGGTCCCTTAAGGTGGAAGCTAATG
ACTGCTTTTCGAAGAAGGTATTGCTCAGAAAATTTACATACAAATGGCAT
CAACACCCGGGTTGCAGGCGGTATGAAACGAAAAAAATTGTGACCATATG
AATCACAGACCCCTGGGGGTATATTTTTTCGGCCTCCTCACCGAAAATTC
AAGTGAGAAGCGGCACGAGAGGTCATCTTCATGCGGTTGCCCGCCAACCT
GGGAGTGCACAAAATCGACCAGCGCTTGGAGACATTATTACTCTCCCGAA
TTTTGGATCGCAACTACAGCCCAAGTTCCCCAGCAGCTGCCTCCTGGTCT
CGTTTTCCGCGAGAGATCCTGCCAGACAGCTGAAGATACCACCCGCCAAG
CGACACTTCAGCGCGTTGCCCGGCAACTTTGTCTTGATCTTGATCTAAGC
GGGCTCGCGATACCAACGTGTAGGGTATTCCTCACAGATTCCAGAATTAC
CCGCCCGAATTTTGGATCGCAACTACAGCCGGAGCTGTTCAAGAAGAACT
CCACATCCCAGCTTGTTTTTGGGCACGGGGGCTCCGTGCTCGTGAACTTT
TGGTCAAAAAAAGGGAGGAGGCAAGTTTTGTGCCGGGTGCAACCCGGGTG
TCAAAGAATGACTACCACCCGAGAAAGTCATTTTCTGGCCCATAAGGTTT
AGGACACATCGATTGCGGAGATCTTGATTAGGACATCTTCGTGGAATTTC
CAGGAAATCTAACCAGGAATCGAGTCAGTTAAGTCCTCGTGGATGAAGAA
GAAGGCGAAAACGATGAAGACGATCCATCGTGAAGATCAAGGCTCCAGCG
TTGTTCGCAGGGGATGAAGACAGCGATTCGAGCTTCTTTGCGGGATGATT
GTCATGTACAGCAAGTGGGATTACAGCCTCAAGGATCACGGATTGATCGG
CACTGCTTTCCTCTTCTACAGCAGTATCCCTTCCACCTTGCTTTTTGCCG
CCACTGCGACTAATTCTCTGTTCCTTTTGTCGACCACGGATTATAATAGT
ATGGGCTAATTAGTAGGGGATTTTGGTTTTGATTTTTGGCCATGAGCTAG
CGTGAGAAGCGGTAACAACAAGTGCTTCTGGCTAGTACTGCTTGCTGCAC
TCGTCCTCCGTCCGGGCGAGCGCCCCGGGGTGAAAAAAAGAAAGGTTCTG
CTCGCTCGTTGATGCTTCTCGCTCGGGCTGTCGCGTCATAGATGCAAGAC
TTTTTCTGTCTGGTTCACCACGACCAATGCTTTCTTGATTTTCATGAAAA
ACTAAAACTCCTCGATTAACCTATAACCCGACGGCTCGCTCACCTCGCTC
GCTTCGCGCGAAACGAAAGGTCTCAGGAGATGATGCGAGGGCGGAGTATC
CTGTGGGGCCACCGTACCTCATGCACGTCCGAGACTGGGCGAGGATTCTC
GACTTGTGGGTGGCGTTGTCGCCCAAGGTGTACAGGCGACACCCGGGAAT
CCTCGCAGAGATGTATGGCTTCTGTATCGCCGCCGCGCATCTTGGGTGAG
TAACTTCGTTGTTCATTGTTCTGTTTCTTGATTGGTCTGTTTTCGCCTGG
GTTGGTTTCACCGCTGTTGCTCACTTTTTGATGAATTCGGCGTATCATAG
GGTAGTGGGTGTTGGCTGGTGGGGGTGGGGACGGAGTTGGAATGGATGGT
AGGATGGTAGATGATCTCGTTGCCGTTGCCGCTGCCGGTGCGGCATCGTT
GTATCGCTTGTCGTTGGTTGTGGTTGTGGTCGTTTTTTTTTTTGTGGTTG
TTGCCTTGGTAGACATAATTATGGTTTCAAGAGGGGAAAAAAGCAACAAT
TTCCCCCTCTTGGTTGGTCAGAAGCAACACAACAGTCCAGGATAATATAG
GAGCGATTGTTTCATTAGTGTAAGGCCTGCCAGCGATGATGCTTTTCAAT
GGGTTTTTTTTCATGCACGCCGGTCTGCGATAGGGCCGAGTGGTTGAGGC
TGTTCATTGCGTAGGTGTCAACTCGAAACCGTGTTTTCTCTTCACTGCCG
CAACACCTCGCCTCGTGTGTTCGATTCCGCGTGTCTTGTCTACACCCCGT
GTTCCTCTTTCGCTTATTTTGTGTGAATGTGTGAATCTCTTGATCTCTTG
ATCGCCGTGGTTTTCCTGTATTTCCTGTATTCCCTGCAGGATACCCCTCT
CTACCGTACCTTCGGCTAGCTTGTCTTACTCTGTTACTTGGCTAGCTTGC
TCCCTCCCTTCATGCCTCGTTCGTGTTCAGTGTGCGCTGCTGCGATTGAT
CGATTCATCGATTCATCGATCGAGCGATTTTCTTTTTTCTCGCTCTCTCT
TTTGTCTGTCAACCACGCACGTGACGCGCCATGTCCTGTCTTGAAAAGAA
CAACACCGCCTTGCCTGCTTACTCCCCTACCTTCCTCCCAAAGCACAGGT
TGCGACATCGCGTAGCGTACGGGCTGATGGTTTCGGACGTGAAGATGGTC
AACCACGAGGGCTGGCCGCTGGTAGACCCCTTGGGGCCGGCCTCGTGCGA
CCCTACCGTCGTGGACCACTGGCGGGGAAGCCTTCCCCCGATAGTCCACT
ACTGCCAGGTACGTAAGGCGACCCTTCAGTGCCATGCCGGCCGGCAACCG
ACGACGCCGTGGGGGTCTGAAGCGCTCGCGCGCTTGTCAGTTTCACGCCT
GTGCAGGTGTCGAGAGAAGCCTGTTTGGTTCGGTTTGCTTGGGGGGTGGA
AAGAACTGCCTCCCTGTGCCGGGGAGCGATGGGAGGGAGGCGGTTGTTGA
GGGGGTACGGGGAAGCGAGTGGAGGAGGGAGGGGAGGTGACCGTCAGTTT
TGGAGGGTGTTTGTACGGTGGTGGTGTAGGCTCGGGCGCTAGGTAGTCAG
CAAGCTAGAAAGACTACCTCCCGTATCGTTCCGAGTGGGCGCGTAGGTGT
TGACCCTCTTTTGGTGCGTGAAGAAGCCGTGGGCACAGTGCCGTGTGTGA
CCCCTGTTGTTTTGTGTGGTGCGTGTTTCTCCTGTAGCTCACACGCGGGG
TAGAAGAAGTCGTCTCGCCCGCTCGAAATGCTCCTAAAATCTTCAAGCGG
TGGCGGGGATTCAGATACTAGAGCAAGTACGTGGTGGTGAAAGGCAGCAG
AGTATTGCTAGCGTAGCAGGTGGGCACAGCGGGCAGGTTCTTTGAAAGCT
CGCCTCCCGAGCTCTCCGCTGTGTGCTACTCTTGCCATTGCACTACTACG
CTGGAGTGGACCAGAGCAATGCTGCTGCTGTGTCACAATTCGACACCACC
ACCGCCGTCTATCTACCTTTATTTGGCACAAGCGTAGAAACGCGCACTCG
GCTTTATCGAAATCACCCTTCTCTCCCCCACCCAGATGTACCGGGTGGGA
ACCTTCATGTGGGGGAAACGCCACCAAAGCCACTACAATTTCTTCTCTTG
CACCTCGGACTCGCTCGAGCTTCCCCCGGCGGACTACCTCAAGGGGCCCA
TGGCCCAGGTCCGCGTGCACCCCAGGGGGAGGACCCCCACCCCTCAAGAG
AAAGTGCCAGCGATGACGGGGATTAGGCAAGGGTACGCGATGTGCGCCGT
GCTGCGGGCCATGAACGAGGCCCTCGCGTCGTACAAGAGCCGATACTGTC
GGCCAGAGGAAGTGAGTGGGGGTGTGCGGAGGTTCACCGACCTCGATAGG
GAGCAGCTGGAGGCCGACGAATACTCGTAGAGCGGGGATGGTCTGGCGGC
GGACCTGAGCTATTCTCGACCTCAGTGCGGTAGGAGGGCGATGTCGTCAG
GGGGCGATAGCGATGCTCCACGTGTACGGAGGGATTTCTCCAAGTTGGCC
GAGTTTTGCATCATGATGTGGGGGGAAAGTTTAGTTCGTTTGCCTTCATT
TAGCTTGTGTGCCTGGCGTTGCCGTGCCTCCATGGCCGGTTTCTTAATCT
GCGATCGTTTGCTCTGGACTGAGCTATGCATAGTCCCAGCCGAGCTGTTC
CTGCTGTGTATTTTTTGCGGATGGCGCGCTCGGGGAGGTTTTGGGAGCTC
TCGCGTTCGGTGTTCTTTCCAAGGTCGTGCGTTCGTGTGCCAAGTGTTGT
CGGTTTTAGCTGGTCTCGAGGCGTTGCGTGTGTTACCGTGGAGGGATGGA
GCAAAGGTCAAAAACGTGAAATAATTGAATGTGAAATATGTGCTCTCCAC
TCTCTCTTGTCCGTCGCGGCTCTTGGGGGAAGACCTAAACGTGCCCGCAG
CTTCCTATTGGTTGCTTTTTGTCAGTTGAGATCTTATTGGTCTAAGAACC
CTGGGGTGTAGGCGGTGCCACCTTAGGGGCCGAGAGCGAGGTCATTTCCC
GAGAAGAGCCCCTTCCTGCTGGGCGGTGACTTTGATCAGCTCGTTGGCCC
CTTCAACACAGCTTGAGTTGGGACTTCTCAAACGCATACATTTTGTGGTA
GGCAGGTTAGCTGAAGCTGGTTTGCGGATGGTCCGGAAAACCGGGAGAGA
GTCGAGATCTTGTTTAGAAAATATACTGTAGACTACATTGTCGCCCTTTA
ACTTTGTTTTTGTGAGTGGAAAACATTTACTTGGGGTAAAGGGGGGTGAT
CGCATCATCTACGGTGTTGGAATGGTCAGGTGTAAACGAGACAGTTACGT
GGCGCCTTTCTTGCTGTCTAGAAATCAAGGCTCCAGAAACTAGATGAATA
CACGTCGAAGTTGTTGTCACGTGGAGCATACGGAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig124:89288..97072+

>mRNA_P-lacustris_contig124.1746.1 ID=mRNA_P-lacustris_contig124.1746.1|Name=mRNA_P-lacustris_contig124.1746.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1938bp|location=Sequence derived from alignment at P-lacustris_contig124:89288..97072+ (Pleurocladia lacustris SAG_25_93)
GACCCCCTGTGCTTGGATTGTGCAAGTGGATTGGGCGAGGCCGGAGCACA
CAGAGCCAGGTTTCCTGAGGCACTTTCTGCTCTCAGCTGTCTACTCGAGC
TCTCTGGCCTCTGCTTATGTTGCTCCCGCTCTCTCAGCTGTTGCTCGCCG
CGAAAAAGTGCGTCCAGAGTGAGCAATACGTACCTGGCGCTTGTCTCCCT
CTGCCGCGGGTCTGCTGGGCACTTTTCTACGATGCGGCAGCGGCGCCGCT
CAAAGCTTGAGTTGGATCGCCTCGAAAATGGGTCTGTGCGGCCTATCCGA
CGATATCTTCTGCTGACGGTAGCTCTGCTCTCCCTCGTCCTCACAGCGTG
GCTGACGTTTCGTCCATTGGCCTCCGGAGGGGCACAGAGAATATCTTCTG
ATCCCACTTCAATTTCTCCGCTAGTTTGGAGAGGTATCGGACACGGGATA
GGGACAGCCCCGACGTCAGTGGACGACATCCACGTGGTGTTTTCGACGGA
CTGCTCGCCCTATCAAAACTATCAAGCGATTGTGCTGTTTCACAGCGCAG
AGGACCCCCTGTGCTTGGATTGTGCAAGTGGATTGGGCGAGGCCGGAGCA
CACAGAGCCAGGTTTCCTGAGGCACTTTCTGCTCTCAGCTGTCTACTCGA
GCTCTCTGGCCTCTGCTTATGTTGCTCCCGCTCTCTCAGCTGTTGCTCGC
CGCGAAAAAGTGCGTCCAGAGTGAGCAATACGTACCTGGCGCTTGTCTCC
CTCTGCCGCGGGTCTGCTGGGCACTTTTCTACGATGCGGCAGCGGCGCCG
CTCAAAGCTTGAGTTGGATCGCCTCGAAAATGGGTCTGTGCGGCCTATCC
GACGATATCTTCTGCTGACGGTAGCTCTGCTCTCCCTCGTCCTCACAGCG
TGGCTGACGTTTCGTCCATTGGCCTCCGGAGGGGCACAGAGAATATCTTC
TGATCCCACTTCAATTTCTCCGCTAGTTTGGAGAGGTATCGGACACGGGA
TAGGGACAGCCCCGACGTCAGTGGACGACATCCACGTGGTGTTTTCGACG
GACTGCTCGCCCTATCAAAACTATCAAGCGATTGTGCTGTTTCACAGCGC
AGAGGCTGTTGGGCAGAAGGGCCCGGTGACCCGCGTGGCGAGCGGCTGCA
CGAGGGAAGAAACGGTGGAGCTGCAGGATCTCATGGACAAGCAGCCGGAG
CGATTCAGGGTGCACTTCACCCCGGACTACAGCTTCGACCCCGAGACTGG
AGAACGGCTGTTGGGCAGAAGGGCCCGGTGACCCGCGTGGCGAGCGGCTG
CACGAGGGAAGAAACGGTGGAGCTGCAGGATCTCATGGACAAGCAGCCGG
AGCGATTCAGGGTGCACTTCACCCCGGACTACAGCTTCGACCCCGAGACT
GGAGAACGATTCATGTTCTACAACAAGCCCAACGGTATGGCCCACTTCTT
GAAGAACGCCGACCCTCCAGTGCAGGAGGCGGTGGTCGCTCTCGTCGATC
CAGACATGATTTTCATGTCCCCGCTTTCGCCGAACGTCGATTCATGTTCT
ACAACAAGCCCAACGGTATGGCCCACTTCTTGAAGAACGCCGACCCTCCA
GTGCAGGAGGCGGTGGTCGCTCTCGTCGATCCAGACATGATTTTCATGTC
CCCGCTTTCGCCGAACGTCGGCAACGTCGATAAGATGCTGTGGCACAAGC
GAGACCAGGAGTTGGGGCCGGACTGGGTGATTGAAGGGGCACCCGTCGGG
CAGTTCTACGGGCTAGGAGGGTGTGGACGATGTGGAATGACCTGCCGGAG
ATAAGCAACGTCGATAAGATGCTGTGGCACAAGCGAGACCAGGAGTTGGG
GCCGGACTGGGTGATTGAAGGGGCACCCGTCGGGCAGTTCTACGGGCTAG
GAGGGTGTGGACGATGTGGAATGACCTGCCGGAGATAA
back to top