mRNA_P-lacustris_contig1228.1693.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1228.1693.1
Unique NamemRNA_P-lacustris_contig1228.1693.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1228.1693.1 vs. uniprot
Match: D8LCE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE7_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.270e-8
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = -1 
Query:  161 AFVDQPEIFENLGFYAPEGGVLLSPCLVPDFQLDVGGEISGTQVSG*LITHKVC------TNPC 334
            A VD PEIFENLGF APEG  L  PCL  DF +D  GE++GTQ    +   + C      T+PC
Sbjct:  305 AIVDTPEIFENLGFVAPEGSFLSDPCLDLDFAVDYLGEVAGTQALRPVGCQEECALCADNTSPC 368
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1228.1693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE7_ECTSI1.270e-850.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1228contigP-lacustris_contig1228:30338..30797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size462
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.5198793-CDS-P-lacustris_contig1228:30337..307241622815544.5198793-CDS-P-lacustris_contig1228:30337..30724Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1228 30338..30724 +
1693493601.296768-CDS-P-lacustris_contig1228:30337..307241693493601.296768-CDS-P-lacustris_contig1228:30337..30724Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1228 30338..30724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.533019-UTR-P-lacustris_contig1228:30724..307971622815544.533019-UTR-P-lacustris_contig1228:30724..30797Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1228 30725..30797 +
1693493601.3068743-UTR-P-lacustris_contig1228:30724..307971693493601.3068743-UTR-P-lacustris_contig1228:30724..30797Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1228 30725..30797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1228.1693.1prot_P-lacustris_contig1228.1693.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1228 30338..30724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1228.1693.1

>prot_P-lacustris_contig1228.1693.1 ID=prot_P-lacustris_contig1228.1693.1|Name=mRNA_P-lacustris_contig1228.1693.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=129bp
RPASVGRHKGIVSVTFRSSSTYPVVYRIPSFTLQHDKGIQRHKGIHNGEG
DAYYKGLCTLYELLVIRSLACRRFPRPHPIGSQARGKGKVRRPPLERKSP
GSRRFQADRRKPSDSVRGEATSSKYGIE*
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mRNA from alignment at P-lacustris_contig1228:30338..30797+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1228.1693.1 ID=mRNA_P-lacustris_contig1228.1693.1|Name=mRNA_P-lacustris_contig1228.1693.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=460bp|location=Sequence derived from alignment at P-lacustris_contig1228:30338..30797+ (Pleurocladia lacustris SAG_25_93)
CGACCAGCCAGCGTCGGCCGTCACAAAGGCATCGTTTCTGTAACATTCCG
ATCATCGTCAACATACCCTGTAGTGTATCGCATTCCATCATTCACTTTAC
AACACGACAAGGGTATTCAACGACACAAGGGTATACATAACGGTGAAGGT
GATGCATACTACAAGGGTTTGTGCACACTTTATGAGTTATTAGTCATCCG
CTCACTTGCGTGCCGGAGATTTCCCCGCCCACATCCAATTGGAAGTCAGG
CACGAGGCAAGGGGAAAGTAAGACGCCCCCCTCTGGAGCGTAAAAGCCCA
GGTTCTCGAAGATTTCAGGCTGATCGACGAAAGCCTAGTGACAGCGTTAG
AGGAGAGGCGACATCGTCGAAGTACGGGATAGAATAAGGCGAGAGGAGAC
GGGTCAGAGACCCGAAATGGAGCAAACGCGACTACCACACAGCACTTTGC
ATGCCATCAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1228:30338..30797+

>mRNA_P-lacustris_contig1228.1693.1 ID=mRNA_P-lacustris_contig1228.1693.1|Name=mRNA_P-lacustris_contig1228.1693.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=774bp|location=Sequence derived from alignment at P-lacustris_contig1228:30338..30797+ (Pleurocladia lacustris SAG_25_93)
CGACCAGCCAGCGTCGGCCGTCACAAAGGCATCGTTTCTGTAACATTCCG
ATCATCGTCAACATACCCTGTAGTGTATCGCATTCCATCATTCACTTTAC
AACACGACAAGGGTATTCAACGACACAAGGGTATACATAACGGTGAAGGT
GATGCATACTACAAGGGTTTGTGCACACTTTATGAGTTATTAGTCATCCG
CTCACTTGCGTGCCGGAGATTTCCCCGCCCACATCCAATTGGAAGTCAGG
CACGAGGCAAGGGGAAAGTAAGACGCCCCCCTCTGGAGCGTAAAAGCCCA
GGTTCTCGAAGATTTCAGGCTGATCGACGAAAGCCTAGTGACAGCGTTAG
AGGAGAGGCGACATCGTCGAAGTACGGGATAGAATAACGACCAGCCAGCG
TCGGCCGTCACAAAGGCATCGTTTCTGTAACATTCCGATCATCGTCAACA
TACCCTGTAGTGTATCGCATTCCATCATTCACTTTACAACACGACAAGGG
TATTCAACGACACAAGGGTATACATAACGGTGAAGGTGATGCATACTACA
AGGGTTTGTGCACACTTTATGAGTTATTAGTCATCCGCTCACTTGCGTGC
CGGAGATTTCCCCGCCCACATCCAATTGGAAGTCAGGCACGAGGCAAGGG
GAAAGTAAGACGCCCCCCTCTGGAGCGTAAAAGCCCAGGTTCTCGAAGAT
TTCAGGCTGATCGACGAAAGCCTAGTGACAGCGTTAGAGGAGAGGCGACA
TCGTCGAAGTACGGGATAGAATAA
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