mRNA_P-lacustris_contig1227.1691.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1227.1691.1
Unique NamemRNA_P-lacustris_contig1227.1691.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1227.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1227contigP-lacustris_contig1227:59769..60172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size404
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.8562655-UTR-P-lacustris_contig1227:59768..597791622815543.8562655-UTR-P-lacustris_contig1227:59768..59779Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1227 59769..59779 +
1693493600.9047034-UTR-P-lacustris_contig1227:59768..597791693493600.9047034-UTR-P-lacustris_contig1227:59768..59779Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1227 59769..59779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.867459-CDS-P-lacustris_contig1227:59779..601721622815543.867459-CDS-P-lacustris_contig1227:59779..60172Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1227 59780..60172 +
1693493600.9131367-CDS-P-lacustris_contig1227:59779..601721693493600.9131367-CDS-P-lacustris_contig1227:59779..60172Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1227 59780..60172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1227.1691.1prot_P-lacustris_contig1227.1691.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1227 59780..60172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1227.1691.1

>prot_P-lacustris_contig1227.1691.1 ID=prot_P-lacustris_contig1227.1691.1|Name=mRNA_P-lacustris_contig1227.1691.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=131bp
MSATNDVHVPTTVASPRGPAAAALAAARQVAARSRPEARPRPVAPITARP
ASALPAIRQTAQSALTPSARSPSGTPTKNASNGNARKNVVILMIPTITRR
RKPVERTKITRGALLVLRLQQLGCLLRLVLF
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mRNA from alignment at P-lacustris_contig1227:59769..60172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1227.1691.1 ID=mRNA_P-lacustris_contig1227.1691.1|Name=mRNA_P-lacustris_contig1227.1691.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=404bp|location=Sequence derived from alignment at P-lacustris_contig1227:59769..60172+ (Pleurocladia lacustris SAG_25_93)
GTTCGCGTTCCATGAGCGCAACGAACGACGTGCACGTCCCCACCACAGTG
GCCTCGCCAAGGGGTCCGGCGGCGGCGGCTCTGGCAGCCGCGCGTCAGGT
GGCGGCTCGTTCCCGTCCGGAAGCTCGTCCTCGTCCGGTGGCTCCAATAA
CGGCACGTCCGGCAAGCGCCCTACCCGCAATTCGTCAAACCGCCCAAAGT
GCACTTACCCCAAGTGCAAGAAGCCCATCGGGCACACCTACGAAAAATGC
TTCCAACGGAAACGCGAGGAAGAACGTGGTAATACTGATGATTCCAACAA
TAACTCGAAGAAGAAAGCCCGTAGAGAGGACGAAGATAACTAGGGGTGCC
CTGCTGGTGTTGCGCCTGCAGCAGTTGGGTTGTCTTTTGCGTCTGGTACT
GTTC
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Coding sequence (CDS) from alignment at P-lacustris_contig1227:59769..60172+

>mRNA_P-lacustris_contig1227.1691.1 ID=mRNA_P-lacustris_contig1227.1691.1|Name=mRNA_P-lacustris_contig1227.1691.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=786bp|location=Sequence derived from alignment at P-lacustris_contig1227:59769..60172+ (Pleurocladia lacustris SAG_25_93)
ATGAGCGCAACGAACGACGTGCACGTCCCCACCACAGTGGCCTCGCCAAG
GGGTCCGGCGGCGGCGGCTCTGGCAGCCGCGCGTCAGGTGGCGGCTCGTT
CCCGTCCGGAAGCTCGTCCTCGTCCGGTGGCTCCAATAACGGCACGTCCG
GCAAGCGCCCTACCCGCAATTCGTCAAACCGCCCAAAGTGCACTTACCCC
AAGTGCAAGAAGCCCATCGGGCACACCTACGAAAAATGCTTCCAACGGAA
ACGCGAGGAAGAACGTGGTAATACTGATGATTCCAACAATAACTCGAAGA
AGAAAGCCCGTAGAGAGGACGAAGATAACTAGGGGTGCCCTGCTGGTGTT
GCGCCTGCAGCAGTTGGGTTGTCTTTTGCGTCTGGTACTGTTCATGAGCG
CAACGAACGACGTGCACGTCCCCACCACAGTGGCCTCGCCAAGGGGTCCG
GCGGCGGCGGCTCTGGCAGCCGCGCGTCAGGTGGCGGCTCGTTCCCGTCC
GGAAGCTCGTCCTCGTCCGGTGGCTCCAATAACGGCACGTCCGGCAAGCG
CCCTACCCGCAATTCGTCAAACCGCCCAAAGTGCACTTACCCCAAGTGCA
AGAAGCCCATCGGGCACACCTACGAAAAATGCTTCCAACGGAAACGCGAG
GAAGAACGTGGTAATACTGATGATTCCAACAATAACTCGAAGAAGAAAGC
CCGTAGAGAGGACGAAGATAACTAGGGGTGCCCTGCTGGTGTTGCGCCTG
CAGCAGTTGGGTTGTCTTTTGCGTCTGGTACTGTTC
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