mRNA_P-lacustris_contig1227.1688.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1227.1688.1
Unique NamemRNA_P-lacustris_contig1227.1688.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1227.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1227contigP-lacustris_contig1227:37544..40439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size499
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.2560403-CDS-P-lacustris_contig1227:37543..375881622815544.2560403-CDS-P-lacustris_contig1227:37543..37588Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1227 37544..37588 -
1693493601.1553915-CDS-P-lacustris_contig1227:37543..375881693493601.1553915-CDS-P-lacustris_contig1227:37543..37588Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1227 37544..37588 -
1622815544.2665203-CDS-P-lacustris_contig1227:39986..404391622815544.2665203-CDS-P-lacustris_contig1227:39986..40439Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1227 39987..40439 -
1693493601.164599-CDS-P-lacustris_contig1227:39986..404391693493601.164599-CDS-P-lacustris_contig1227:39986..40439Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1227 39987..40439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1227.1688.1prot_P-lacustris_contig1227.1688.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1227 37544..40439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1227.1688.1

>prot_P-lacustris_contig1227.1688.1 ID=prot_P-lacustris_contig1227.1688.1|Name=mRNA_P-lacustris_contig1227.1688.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=166bp
SRARRVSCCIARLVVLACLLGTRRMDVGGDVFDNLFSSVWQAFGEESSAD
SPEDRSTIPRATTAKRTAPPTPTAGATASPVAHYRDAAARCVTGMVDDTL
LVGSTSNFDASTTAAPVFKQAKMRNVLASAGAGRGGRIQNVHGAALHKVI
ETKAEETLQGLRERRQ
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mRNA from alignment at P-lacustris_contig1227:37544..40439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1227.1688.1 ID=mRNA_P-lacustris_contig1227.1688.1|Name=mRNA_P-lacustris_contig1227.1688.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2896bp|location=Sequence derived from alignment at P-lacustris_contig1227:37544..40439- (Pleurocladia lacustris SAG_25_93)
TCTCGCGCTCGCCGTGTCAGCTGCTGCATAGCCCGACTGGTTGTGTTAGC
GTGTCTATTGGGGACAAGGCGCATGGATGTCGGAGGTGATGTCTTCGACA
ACCTATTTTCCTCTGTGTGGCAAGCGTTCGGCGAAGAATCATCTGCGGAT
TCACCCGAGGATCGATCAACCATCCCACGTGCCACTACGGCCAAGAGGAC
AGCGCCGCCAACACCGACGGCCGGGGCTACTGCTTCTCCTGTAGCCCATT
ATAGAGATGCAGCCGCTAGATGCGTGACGGGGATGGTTGATGATACCTTG
CTTGTGGGCTCGACCAGCAACTTCGATGCATCAACGACAGCAGCTCCCGT
TTTCAAACAAGCAAAGATGCGAAACGTGCTGGCAAGTGCAGGAGCGGGAC
GAGGGGGGCGGATTCAGAATGTCCATGGGGCTGCTCTCCACAAGGTCATC
GAGGTGTGTATCAACACGCTTCGTGCTTTGCGCAAAATTTTCCAAGATTT
TTCAAATATGAAGCCTGTAGGTCTACTTTCCATCGGATCTACGTGTCAAG
ACTACAATGTAACAACAGCAGGGAGAAAGTCTTGTTCAAAAAAAGATCTT
GTGGAACAAAGAATTAACCGCCGGTTCCGAGTTGAGATAGACGCACATGA
CGCAATCTTGTCTCTTGCTCTGTACCCCTCCCCACATACTAAGCTCGCTT
TGAACCCGTAGTGGCTGTCCTTGTGATACATTTACGCCAAACAGGGTTGC
TCGTCAACTGTTTTTCCAGGTCGACTTGAAAATACGAAATTCTGCAACTC
CTAACCGACGGGTCCATGGGTTGATAGCATGCTATACTCGGAGTACTTAT
TTGTACAAGTTGTAATCTGCAGTTTTGCCTCTGAAACGTATTCTAGGTTG
ATCCCATTACGTCTTCCAAACGCTTTGATATAACCATAATCACTTGCAAG
GGAAAACCAATCAATCGATCGGCCAATCAACGCAACAATCATGACAATGT
TCGATTTTTTCGAAGCTTAGTCTAATTAAATAAAACGACACAATAGGGTT
TCCCTGGCCGAACCGCGACACACCAGGGTAATCTGTCTTTATCAACGTAA
AAACGAACGGTGCTGATTGGCCGACACTAAATTGTACCCCACCGCGGTCG
GAAAAGGGCATGGTACACCCTGCTGCGTCATTCATTGTCGCCAATTGTAC
CCTGATTTTCGGGCCCTGTACCTGACCTGACGGGAAATGAGACTCTCCTA
TTGGCTTATTTTTGTGGCGAGGGTGGTTATACCGCCAGTTGGCAAGAATC
GTTCGTGTAGATGTGCTCCACGCCTATAGGTCCCACGCACACGCACGTAT
GGTAGAAGCGCTAGCACCCGGCCAATCTGTTAGTCCGCCTTCTGCGAGGC
AGGTGTGCATTTTCCCCACTTAATTGCATTTTATCTCTTGTCGTGTTTGA
ACCCTATCCCTAACCCTAACCCTAACCACCCGACCGATCAGCCCTCTGGT
AAGGTTCTACGTCGCTGGACCTTAGTTAGGTGCTAGGTTGCTGTGCACGG
GCAGGGCTAGGCCGCGGCTACGCCGCGGCGGGACTGCCGCGCGCGATGAC
CACGACTTACAAAGTAGAACCTTTCTCGACGCAAAAAAAGAGGATACCCT
GGTGAGTCGCGGTTCGGCCAGGGTATACCCTGTTGGGTCGTTTTCCCTTA
ATTAAATCAGCAGATTAAGCGCCCATGGGCCGATATCATTGAATCACAGC
CGCACCAGATTCACCTTCCCCATCTGTCTGCGAGTTACAATGGTACCTGT
TCCTCTTTGCTTTTGGCATACATGTTTTCATTGACGTCGCAATGTCTTCC
ACGTTACGTATTGGGGGTGCGACGGACAAGAACACATCCGGTTCAAGTAA
TACGCGTACCACCATTTAATCACCCATTAGACCATCATCATACGCTGCTA
GAACACCCATATGTCCTATGATGTGAGGGAGGATTGTTTTTCTCTGTTGC
CCGGCGAGCAGCCCTAGACGACGCACCCTACTTCATTACACATGCTGAAC
AGCGGCAGGAGTTCACACTCCGTGGCAACGGCGCAGTGCACTCTACCAGG
GCCTGTCCTTTATGGTTTGGGAGGAAAACTACTGTATATCTGCATCCCGA
TCCACCCGATCCCCGCTCAGACGGCATCACGTCTCGTTACCACAAGTTCG
CCTGCATGCAGAGAGCTCACTCAGCAGGCACCACCATGCGAGTTGACAGG
TACATAGTGCATGTTAGGAGTTAGGAGGGTACATGTCTTACTTTTGCAGG
TAGTATTGTCTAGCACCGTAACACGAAGATGGATGGGGGTGGTGGGTATT
TTGAAGTAATTTCAACAATGTAAATGTAAACCACGCAATGCTGCGGCCGG
GCGCGTGTGCAGCGAATCGATTGGTCATGAAAAATGAGCCCGCTGGGAGC
TTATCGCTGTTTGAAGCCTCCCGGAAAGCAAACCATCACGAAACTGTTGG
TTTGTGGATTACACCTAGAGTTGATTTTTTGGGTAGTCATGGTAAAATTA
AGTACTATTTGGAAAAAATGATCAAACGAATCAAAACCCCAACAAATTGC
CCCAAGAGCGACCCCAACGACACGTTCACGTCTGTGCTGTCGCGAACGCT
CGTGGTTCGCCGTGACCGACCGGCGCTCCCAATCCCGGCGCGAACAGTGT
CGGCGCCGCCGCCTGGCGCCGCCCATGCGGAGGTTTCATGCGAGCTTTCG
ATGCATGGCATAACAAGCTAGGCTCGAGAAGCTAAGGATCCATCAAGACA
AGTACACGATACCAGTGCGATCGCCCCCCCCCCCTCGCCAATATTCACCA
GACGAAAGCCGAAGAAACCCTCCAAGGACTGCGTGAGCGACGACAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1227:37544..40439-

>mRNA_P-lacustris_contig1227.1688.1 ID=mRNA_P-lacustris_contig1227.1688.1|Name=mRNA_P-lacustris_contig1227.1688.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=996bp|location=Sequence derived from alignment at P-lacustris_contig1227:37544..40439- (Pleurocladia lacustris SAG_25_93)
TCTCGCGCTCGCCGTGTCAGCTGCTGCATAGCCCGACTGGTTGTGTTAGC
GTGTCTATTGGGGACAAGGCGCATGGATGTCGGAGGTGATGTCTTCGACA
ACCTATTTTCCTCTGTGTGGCAAGCGTTCGGCGAAGAATCATCTGCGGAT
TCACCCGAGGATCGATCAACCATCCCACGTGCCACTACGGCCAAGAGGAC
AGCGCCGCCAACACCGACGGCCGGGGCTACTGCTTCTCCTGTAGCCCATT
ATAGAGATGCAGCCGCTAGATGCGTGACGGGGATGGTTGATGATACCTTG
CTTGTGGGCTCGACCAGCAACTTCGATGCATCAACGACAGCAGCTCCCGT
TTTCAAACAAGCAAAGATGCGAAACGTGCTGGCAAGTGCAGGAGCGGGAC
GAGGGGGGCGGATTCAGAATGTCCATGGGGCTGCTCTCCACAAGGTCATC
GAGTCTCGCGCTCGCCGTGTCAGCTGCTGCATAGCCCGACTGGTTGTGTT
AGCGTGTCTATTGGGGACAAGGCGCATGGATGTCGGAGGTGATGTCTTCG
ACAACCTATTTTCCTCTGTGTGGCAAGCGTTCGGCGAAGAATCATCTGCG
GATTCACCCGAGGATCGATCAACCATCCCACGTGCCACTACGGCCAAGAG
GACAGCGCCGCCAACACCGACGGCCGGGGCTACTGCTTCTCCTGTAGCCC
ATTATAGAGATGCAGCCGCTAGATGCGTGACGGGGATGGTTGATGATACC
TTGCTTGTGGGCTCGACCAGCAACTTCGATGCATCAACGACAGCAGCTCC
CGTTTTCAAACAAGCAAAGATGCGAAACGTGCTGGCAAGTGCAGGAGCGG
GACGAGGGGGGCGGATTCAGAATGTCCATGGGGCTGCTCTCCACAAGGTC
ATCGAGACGAAAGCCGAAGAAACCCTCCAAGGACTGCGTGAGCGACGACA
GACGAAAGCCGAAGAAACCCTCCAAGGACTGCGTGAGCGACGACAG
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