mRNA_P-lacustris_contig1227.1687.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1227.1687.1 vs. uniprot
Match: D8LSS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS4_ECTSI) HSP 1 Score: 383 bits (984), Expect = 2.930e-106 Identity = 399/842 (47.39%), Postives = 453/842 (53.80%), Query Frame = 2
Query: 1703 QEMYTKGARNIGSEPNKTAAAVFARSVSTMLAETYLGHNPRRPSRHEGARQLERNEAGDTA----------------RESESETAAPAAAEAAGIDSNEHAHLGSAWSALARG------ASSSFVVSATTDAHRRRGHLKAA---GSVDE-HHLEALASIPDVLVTGAGAGAGAERP-GDHPCRMTGQANSDETRPSGEE--GIAGSGSAPAAXXXXXXXXXXXXXXXXRKSTTAAPPPLHFAPAAVFQLLGTPHCREFVEALPPAARARVLALNEEFP---APPIAQLYIPLAPALRNGLRRPRCQGPPRPRSALLGALVHPLPARAMRELLQVYVATTRAVGXXXXXXXXXXXXXXXXXXXXXXI--------------ARDGGV---GRVDSSAAQRGDNSDSKKMGVKHLESPRGNEGTGPKEXXXXEEPGEQPEGYGGCVDAGHGESRMERLWVDIAAMPPSAVDVLPDAPTTRGGTESSDLPTAGIEPRTRPAPSPGCDVSFVASSTVNSEVASVGVRDNERNTVDMAGDTRHRISRHYG-AGSTADTPLSSSLREPFRRTYVAVLAPP--QP--------SXXXXXXXXXXXXXNATHTARAAGKSTTPLAGGSALILQLEPPVTQQESP--HLGAVRDGVSHDGNGEAAAAATV-GRGKDDDAVVE-RTGIAGRRGAGAGLVTPLPVCSWRACLAGAISGSLCAVHLQLRDFLDRKAAKTGGVSDALRFLPAGSRSKRRSSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGELSVIWSMSPLLSELLNGKLGTTIAMFCRRAAAEARGSRRRG 4036
QE Y +GA N GS ++TAA+VFA+SVS MLAETYL P + G ++ E G T R +++ +A AG+ + GS W A G ++ SFVVS T D HR+RG LKAA GS D+ LEALAS+PDVLV AG GAERP GDH R G +S ET SG E G++GSGS+P XXXXXXXXXXXXXXXX LHFAPA V QLLGT HCREFV+ALPP ARARVLAL + FP PPI LY+PLAPA GPP LLGALV PLPARA+RELLQ+YVATTRAVG XXXXXXXXXXXXXXXX ARD GV G D + G H ES R + G +PG + EG +R ++AA PPSAVDVLPD P T + G P P G + + ++ EV + DN + + A R R + A S AD P+SSSLR PFR TYVAVLAPP QP XXXXXXXXXXXXX TPL+G SALILQLE PVT S GAV+D G+ AAA V G G D AVV AG P VC WRACLA A++G LC VHL+L+ FLD KAAKTGGVSDA RFLP GS KRRSS XXXXXXXXXXXX EGELSV+ SMSPLL+ELLNGKLGTTIAMFCRRAAAEAR RRG
Sbjct: 468 QEKYMEGAGNAGSGNDRTAASVFAKSVSAMLAETYLRPKPPSSGGNAGVSRVLEREEGSTQSDRLVTPKHVGGEGLLRANQATASAEEKETVAGVRGGDEQLGGSFWGAFVGGGEGGCASAPSFVVSGTVDDHRKRGRLKAAPDGGSADDDRRLEALASVPDVLV----AGPGAERPIGDHDNRRIGDHSSRETLASGGERGGLSGSGSSPVPXXXXXXXXXXXXXXXXXXXXXRRRQ-LHFAPAGVRQLLGTAHCREFVKALPPPARARVLALTQAFPDGTLPPIGHLYVPLAPARPGKDTLTAGSGPP-----LLGALVQPLPARAVRELLQIYVATTRAVGEAEGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLTARDRGVVRSGCEDDAGTDDGG----------HTESRRWSSGG---------QPGRE-EGSXXXXXXXXXXXXXDRA--NLAATPPSAVDVLPDEPPTSSSAPPVGIGRTGTRPAAPSCPGDGVEGADGGPTSSGGEVPA----DNVEDDAEAAWSARRRRTPLCSTADSGADAPISSSLRAPFRHTYVAVLAPPLAQPPSPFSSAAGXXXXXXXXXXXXXXXXXXXXXXXXGQTPLSGASALILQLETPVTATGSSLSSFGAVQD------RGQCGAAAAVAGCGNGDGAVVVGXXXXXXXXXXXAGSEMPRRVCGWRACLADAVAGPLCPVHLELKRFLDGKAAKTGGVSDAFRFLPPGSGPKRRSSXXXXXXXXXXXXXXAATEAGTARVVAALSAVDGGG--------------EGELSVMRSMSPLLAELLNGKLGTTIAMFCRRAAAEARAPGRRG 1253
BLAST of mRNA_P-lacustris_contig1227.1687.1 vs. uniprot
Match: A0A6H5LGS9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGS9_9PHAE) HSP 1 Score: 362 bits (928), Expect = 3.920e-99 Identity = 422/1034 (40.81%), Postives = 481/1034 (46.52%), Query Frame = 2
Query: 722 VVKALREAL---RAKAGDDAASSTAVVLAV-AEKSPFGVADVFRRAVMCGNRGLVAAL-SSNDRAADDAALDPRRHSS--GDSTALWSTSGGLRRSSSLFPVVRPPDVS-VWKGSTTTRSRSGCEKR--------------ERFSAVGAEPGLLLSSSHLQWTLRSPFGIDTVDPDCGRRDGYNAHGSSRAQQEGGVRQPGGVAGEGVSERSVSGRLRNLRKRVGGSEGWAAARGGSGGGCSVVD--------STSGSRSSRRQWLDLDVAWIGATPVGSRVYYCLEEAEWAASRRREGPDSSSPRS--FLATAATLEREASPPRHDKQRRRRPLSA--GDDAVYEVAGTRGEREGGHEDGQEMYTKGARNIGSEPNKTAAAVFARSVSTMLAETYLGHNP----------RRPSRHEGARQLER-----NEAGDTARESESETAAPAAAEAAGIDSNEHAHLGSAWSALARGASS------SFVVSATTDAHRRRGHLKAAGSVDE----HHLEALASIPDVLVTGAGAGAGAERP-GDHPCRMTGQANSDETRPSGEE--GIAGSGSAPAAXXXXXXXXXXXXXXXXRKSTTAAPPPLHFAPAAVFQLLGTPHCREFVEALPPAARARVLALNEEFP---APPIAQLYIPLAPALRNGLRRPRCQGPPRPRSALLGALVHPLPARAMRELLQVYVATTRAVGXXXXXXXXXXXXXXXXXXXXXXI--------------ARDGGVGRVDSSAAQRGDNSDSKKMGVKHLESPRGNEGTGPKEXXXXEEPGEQPEGYGGCVDAGHGESRMERLWVDIAAMPPSAVDVLPDAPTTRGGTESSDLPTAGI-EPRTRPA----PSPGCDVSFVASSTVNSEVASVGVRDNERNTVDMAGDTRHRISRHYG-AGSTADTPLSSSLREPFRRTYVAVLAPP--QPSXXXXXXXXXXXXXN------ATHTARAA--GKSTTPLAGGSALILQLEPPVTQQESP--HLGAVRDGVSHDGNGEAAAAATVGRGKDDDAVV 3532
VV+ LREA G++ ++S AVVLAV A SP VADV RRAV+C N GL AL S D A + R H S GD A S GG RR S+ VV PPD + V KGS + S K+ R + V AEPGLLLSSSHL WTL P + V RR G GGC D S+ G RR+ LD +VAWIG PVGSRVYYCLEEAEW ASR R + P S + T E SPP P SA G DAV + A Q YT+GA N GS+ ++TAA++FA+SVS MLAETYL NP R R E + Q ER + G+ + T G+ + GS W A G SFVVS T D HR+RG LKAA LEALAS+PDVLV AG GAERP GDH R G +S ET SG E G++GSGS+P XXXX LHFAPA V QLLGTPH REFV+ALPP ARA VLAL + FP PPI LY+PLAPA GPP LLGALV PLPARA+RELLQ+YVATTRAVG XXXXXXXXXXXXXXXX ARD GV R R D+ ++AA PPSAVDVLPD P T SS P GI P TRPA P G + + ++ EV + DN + + A R R + A S AD P+SSSLR PFR TYVAVLAPP QP XXXXXXXXXXXXX T+ ARAA G+ TPL+G SALILQLE PVT S GAV+D AAAA GRG D AVV
Sbjct: 314 VVRTLREAAVQCEKAGGENISASAAVVLAVPAGTSPPAVADVVRRAVLCANGGLATALLSCKDXXXXAAVSESRSHGSSGGDRVAFRSIPGGPRRWSA---VVGPPDAAAVGKGSLASCKGSSSAKKTDREGXXXXXSGCGNRCTVVEAEPGLLLSSSHLLWTLWPPLDTNAVHEGHPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXGEDGGCGAEDRARSGGHGSSIGGDGGRRRDLDREVAWIGVAPVGSRVYYCLEEAEWEASRWRRRRERELPSSSPYPVTXXXXRDEGSPP---------PQSAVGGGDAVCDGAXXXXXXXXXXXX-QGRYTEGAGNAGSKDDRTAASLFAKSVSAMLAETYLRPNPPCSGGNAVESRVLEREEVSAQSERLVTPKHVGGEDLLRANQATVPAEQETVVGVRGGDEHLDGSFWEAFVGGXXXXXXXXPSFVVSGTVDDHRKRGRLKAAPDXXXXXXXRRLEALASVPDVLV----AGPGAERPVGDHDIRRAGDHSSRETLASGGERGGLSGSGSSPVPQVVGASTVNAAAXXXXXXXXXRRR--LHFAPAGVLQLLGTPHYREFVKALPPPARAHVLALTQVFPDGTLPPIGHLYVPLAPARPGKDTLTAGSGPP-----LLGALVQPLPARAVRELLQIYVATTRAVGEAEGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLTARDRGVVRSGCDDDARTDDXXXXXXXXXXXXXXX-------------------XXXXXXXXXXXXXXXXXXXXRANLAATPPSAVDVLPDEPPT-----SSSAPPVGIGRPGTRPAAPACPGDGVEGADGGPTSSGGEVPA----DNVEDDAEAAWSARRRRTPLCSTADSGADAPISSSLRAPFRHTYVAVLAPPPAQPPXXXXXXXXXXXXXXXXGQSVTTNKARAADCGRGQTPLSGASALILQLETPVTATGSSLSSFGAVQDRGPC-----GAAAAVAGRGNGDGAVV 1287
BLAST of mRNA_P-lacustris_contig1227.1687.1 vs. uniprot
Match: D8LSS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS3_ECTSI) HSP 1 Score: 175 bits (444), Expect = 2.270e-42 Identity = 246/545 (45.14%), Postives = 276/545 (50.64%), Query Frame = 1
Query: 4192 KVLRAEKEVTLELRRLSNLGIYPTAELAHIRRAHGALAAEWRQALG----DDDSGRCGXXXXXXXXXXXXXXXRVFDTAGASFGHWPPPNGTSISKRAATRPVGTPXXXXXXXXXXXXXXXXXXXGALASFTAKAGQGQVAILXXXXXXXXXXCLSGP--SAMVGGAQGASSDNSAEKRLGGRRQHLKASRGAGRWGLAR------PRRDRSGMSGGGGRGARDDGGREATPGPQT--RSEQEIELNFSRLKWALFRRRRQEAEIPSVVARGYAPGHGQAAVPPLGSRTPVLSSSGRGSSXXXXXXXXXXXXXXXXXFQLD----------SXXXXXXXXXXXXXXAEEQSYQLSPISTMLTRPAGRHNGGIGRRSRELQ------HHGAARVPPTASTVTAVANPTRTTTAAPTALLGRRHSSPPSICALTPGGSAAGEGPASAVQVSPGTLAQVQTTA-GRVV--------ASHGTE---AEGGKGECSRGVPGGRGGSSRVVSRRRTPIGGAAAAAVGV----NLRGFDAAPYQTTVHFRDR 5688
KVLRAEKEVTLELRRLSNL +YP AELAHIRR H ALA EW+Q +G DD+ GR XXXXXXXXX XXXXXXXXXXXXXXXXXXX XXXXXXXX LSGP + GG R+H + G G A P R + G G G+E G Q+ R EQEIEL FSRLKWALFRRRRQEAEIP +VARG HGQ VPPLG+ PVLS++G XXXXXXXXXXXXXXXXX S AEEQ YQLSP+ST+LTR +GR H +R+PP AS+ A P+ T A TA L R HSSPP + AL +AA EGP+S+ QVSP + TTA GR + AS+G + E GKG R VPG RVVSRRRT G LRGFDAAPYQ+TVHFRDR
Sbjct: 12 KVLRAEKEVTLELRRLSNLEVYPAAELAHIRREHRALATEWQQVIGKDATDDEHGRLHVVGEDDXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSLSGPLTATGAGGXXXXXXXXXXXXXXXXGRRHRRKGYGXXXXGGASIPGSRGPPGVRGKVKGATGVXXXXXXGKEEGLGSQSENRGEQEIELEFSRLKWALFRRRRQEAEIPRMVARG----HGQTPVPPLGAMPPVLSTAGXXXXXXXXXXXXXXXXXXXXXXXXXREASGTPLKPSSSSPLSLEGFPAPPAEEQLYQLSPMSTLLTRASGRRGXXXXXXXXXXXXXXXXXHQRVSRLPPKASSPKPAALPSTTAVATATAFLERGHSSPPRVGALA--AAAAHEGPSSSGQVSPEAVGPAPTTAAGRAMRVAVVAAAASYGNDKGNGERGKGSGGRAVPG------RVVSRRRTFGAGXXXXXXXXXXXXGLRGFDAAPYQSTVHFRDR 538
BLAST of mRNA_P-lacustris_contig1227.1687.1 vs. uniprot
Match: A0A6H5L119_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L119_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.900e-21 Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 4126 WADPGEVEAVNRKLEADTRWAEKVLRAEKEVTLELRRLSNLGIYPTAELAHIRRAHGALAAEWRQ 4320
WADP E +A +RKLEADTRWAEKVL AEKEVTLELRRLSNL +YP AELAHIRR H ALA EW+Q
Sbjct: 117 WADPEEAKAADRKLEADTRWAEKVLLAEKEVTLELRRLSNLEVYPAAELAHIRREHRALATEWQQ 181
BLAST of mRNA_P-lacustris_contig1227.1687.1 vs. uniprot
Match: A0A7S3ZNN3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNN3_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 6.510e-5 Identity = 51/165 (30.91%), Postives = 63/165 (38.18%), Query Frame = 2
Query: 3590 PVCSWRACLAGAISGS-----------LCAVHLQLRDFLDRKAAKTGGVSDALRFLPAGSRSKRRSSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGELSVIWSMSPLLSELLNGKLGTTIAMFCRRAAAEA--RGSRRRGQAD 4045
PVC WR+C A S LCA H L+ LD A G SDALRF+P ++ + E + I SPLL EL NGKLG T+ +FCRRAAAE+ R SRR+ + D
Sbjct: 586 PVCQWRSCSCAARSSRRVVGKKQPNRPLCAWHRSLKRHLDDGAQAAGRASDALRFVPRAKAAREAAEA-----------------------------------VRASKKSNYGDQDAAEAAAIRGASPLLVELSNGKLGQTVRVFCRRAAAESAERKSRRKDKED 715 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1227.1687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1227.1687.1 >prot_P-lacustris_contig1227.1687.1 ID=prot_P-lacustris_contig1227.1687.1|Name=mRNA_P-lacustris_contig1227.1687.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=1066bp MCGNRGLVAALSSNDRAADDAALDPRRHSSGDSTALWSTSGGLRRSSSLFback to top mRNA from alignment at P-lacustris_contig1227:24502..37606- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1227.1687.1 ID=mRNA_P-lacustris_contig1227.1687.1|Name=mRNA_P-lacustris_contig1227.1687.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13105bp|location=Sequence derived from alignment at P-lacustris_contig1227:24502..37606- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1227:24502..37606- >mRNA_P-lacustris_contig1227.1687.1 ID=mRNA_P-lacustris_contig1227.1687.1|Name=mRNA_P-lacustris_contig1227.1687.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=6396bp|location=Sequence derived from alignment at P-lacustris_contig1227:24502..37606- (Pleurocladia lacustris SAG_25_93)back to top |