mRNA_P-lacustris_contig1226.1682.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1226.1682.1
Unique NamemRNA_P-lacustris_contig1226.1682.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1226.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1226contigP-lacustris_contig1226:11274..11717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.3758125-CDS-P-lacustris_contig1226:11273..117171622815543.3758125-CDS-P-lacustris_contig1226:11273..11717Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 11274..11717 +
1693493600.728133-CDS-P-lacustris_contig1226:11273..117171693493600.728133-CDS-P-lacustris_contig1226:11273..11717Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 11274..11717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1226.1682.1prot_P-lacustris_contig1226.1682.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1226 11274..11717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1226.1682.1

>prot_P-lacustris_contig1226.1682.1 ID=prot_P-lacustris_contig1226.1682.1|Name=mRNA_P-lacustris_contig1226.1682.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=148bp
RKTLRKDASSHTYSPCLTEEPHDNTQLNTCLSALAEIEIGRARKSDNRYY
ILDLTDLLRYATEGSSRPGSVSAFKALALAYLLLLKLVNAVVSGGRALAY
RQQENPEKLEDTPYKVQPNRSNLAPSPVSPHPLRFGGIVLVKLARTP*
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mRNA from alignment at P-lacustris_contig1226:11274..11717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1226.1682.1 ID=mRNA_P-lacustris_contig1226.1682.1|Name=mRNA_P-lacustris_contig1226.1682.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=444bp|location=Sequence derived from alignment at P-lacustris_contig1226:11274..11717+ (Pleurocladia lacustris SAG_25_93)
CGCAAGACGCTTCGCAAAGACGCTTCCTCACACACCTATTCCCCATGTCT
TACAGAAGAACCTCACGACAATACACAGTTGAATACGTGTTTGTCAGCTC
TTGCAGAGATTGAAATAGGGAGGGCGAGAAAAAGCGATAACCGTTATTAT
ATCTTGGATCTCACTGATCTTCTTCGCTACGCAACAGAGGGAAGCTCACG
TCCTGGGTCTGTCTCGGCGTTCAAAGCCCTGGCCCTGGCATACTTACTCT
TGTTAAAGTTGGTAAACGCGGTTGTTTCAGGGGGTCGAGCACTCGCTTAT
CGACAGCAGGAGAATCCTGAAAAATTGGAGGATACGCCTTACAAGGTTCA
GCCCAACCGTTCTAACTTAGCCCCCTCCCCGGTCTCTCCCCACCCCCTAC
GCTTCGGAGGCATAGTGCTCGTAAAATTAGCAAGGACCCCGTAA
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Coding sequence (CDS) from alignment at P-lacustris_contig1226:11274..11717+

>mRNA_P-lacustris_contig1226.1682.1 ID=mRNA_P-lacustris_contig1226.1682.1|Name=mRNA_P-lacustris_contig1226.1682.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=888bp|location=Sequence derived from alignment at P-lacustris_contig1226:11274..11717+ (Pleurocladia lacustris SAG_25_93)
CGCAAGACGCTTCGCAAAGACGCTTCCTCACACACCTATTCCCCATGTCT
TACAGAAGAACCTCACGACAATACACAGTTGAATACGTGTTTGTCAGCTC
TTGCAGAGATTGAAATAGGGAGGGCGAGAAAAAGCGATAACCGTTATTAT
ATCTTGGATCTCACTGATCTTCTTCGCTACGCAACAGAGGGAAGCTCACG
TCCTGGGTCTGTCTCGGCGTTCAAAGCCCTGGCCCTGGCATACTTACTCT
TGTTAAAGTTGGTAAACGCGGTTGTTTCAGGGGGTCGAGCACTCGCTTAT
CGACAGCAGGAGAATCCTGAAAAATTGGAGGATACGCCTTACAAGGTTCA
GCCCAACCGTTCTAACTTAGCCCCCTCCCCGGTCTCTCCCCACCCCCTAC
GCTTCGGAGGCATAGTGCTCGTAAAATTAGCAAGGACCCCGTAACGCAAG
ACGCTTCGCAAAGACGCTTCCTCACACACCTATTCCCCATGTCTTACAGA
AGAACCTCACGACAATACACAGTTGAATACGTGTTTGTCAGCTCTTGCAG
AGATTGAAATAGGGAGGGCGAGAAAAAGCGATAACCGTTATTATATCTTG
GATCTCACTGATCTTCTTCGCTACGCAACAGAGGGAAGCTCACGTCCTGG
GTCTGTCTCGGCGTTCAAAGCCCTGGCCCTGGCATACTTACTCTTGTTAA
AGTTGGTAAACGCGGTTGTTTCAGGGGGTCGAGCACTCGCTTATCGACAG
CAGGAGAATCCTGAAAAATTGGAGGATACGCCTTACAAGGTTCAGCCCAA
CCGTTCTAACTTAGCCCCCTCCCCGGTCTCTCCCCACCCCCTACGCTTCG
GAGGCATAGTGCTCGTAAAATTAGCAAGGACCCCGTAA
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