mRNA_P-lacustris_contig1224.1677.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1224.1677.1
Unique NamemRNA_P-lacustris_contig1224.1677.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1224.1677.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.010e-20
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 ECGLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETM-PIVQTFESSMHTAAMISSGQG 195
            E  LQ +AQTGQ+ Q+RRLLYVEMLKKATA VS+GVQ VPP+TM  IVQTFESSM+ AAMISSGQG
Sbjct:  474 ETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQG 539
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BLAST of mRNA_P-lacustris_contig1224.1677.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.940e-11
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   43 QNRRLLYVEMLKKATATVSAGVQTVPPETM-PIVQTFESSMHTAAMISSGQGL 198
            Q+RRLLYV+M+K+  A VSAGV+ VPP+T+  IV+TFESS++ AA ISSGQG+
Sbjct:  334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGV 386
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BLAST of mRNA_P-lacustris_contig1224.1677.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-10
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 ECGLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETM-PIVQTFESSMHTAAMISSGQGL 198
            E  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +  +V+ F+  +H A+ I S  GL
Sbjct:   21 ESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGL 87
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BLAST of mRNA_P-lacustris_contig1224.1677.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 4.940e-10
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 ECGLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETM-PIVQTFESSMHTAAMISSGQGL 198
            E  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +  +VQ F+  +H A+ I S  GL
Sbjct:  321 ESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGL 387
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BLAST of mRNA_P-lacustris_contig1224.1677.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.780e-9
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 ECGLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETM-PIVQTFESSMHTAAMISSGQGL 198
            E  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +  +V+ F+  +H A+ I S  GL
Sbjct:  766 ESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGL 832
[Close]
BLAST of mRNA_P-lacustris_contig1224.1677.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.380e-8
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 ECGLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETM-PIVQTFES-SMHTAAMISSGQGL 198
            E  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +  +V+ F+   +H A+ I S  GL
Sbjct:  120 ESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGL 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1224.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE9.010e-2077.27MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE2.940e-1164.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK5_9PHAE1.640e-1049.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FLA8_ECTSI4.940e-1050.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJG6_9PHAE1.780e-949.25SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JMX3_9PHAE4.380e-848.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1224contigP-lacustris_contig1224:63500..63700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.8101552-CDS-P-lacustris_contig1224:63499..636821622815542.8101552-CDS-P-lacustris_contig1224:63499..63682Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1224 63500..63682 -
1693493600.3367412-CDS-P-lacustris_contig1224:63499..636821693493600.3367412-CDS-P-lacustris_contig1224:63499..63682Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1224 63500..63682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.8250701-UTR-P-lacustris_contig1224:63682..637001622815542.8250701-UTR-P-lacustris_contig1224:63682..63700Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1224 63683..63700 -
1693493600.349199-UTR-P-lacustris_contig1224:63682..637001693493600.349199-UTR-P-lacustris_contig1224:63682..63700Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1224 63683..63700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1224.1677.1prot_P-lacustris_contig1224.1677.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1224 63500..63682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1224.1677.1

>prot_P-lacustris_contig1224.1677.1 ID=prot_P-lacustris_contig1224.1677.1|Name=mRNA_P-lacustris_contig1224.1677.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
MAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMPIVQTFESSMHT
AAMISSGQGL*
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mRNA from alignment at P-lacustris_contig1224:63500..63700-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1224.1677.1 ID=mRNA_P-lacustris_contig1224.1677.1|Name=mRNA_P-lacustris_contig1224.1677.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=201bp|location=Sequence derived from alignment at P-lacustris_contig1224:63500..63700- (Pleurocladia lacustris SAG_25_93)
GAGTGTGGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAACCG
CCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGTGAGCG
CTGGGGTGCAGACGGTTCCTCCTGAGACTATGCCCATCGTACAGACTTTC
GAAAGTAGCATGCACACCGCGGCGATGATTTCGTCGGGGCAGGGGCTGTA
A
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Coding sequence (CDS) from alignment at P-lacustris_contig1224:63500..63700-

>mRNA_P-lacustris_contig1224.1677.1 ID=mRNA_P-lacustris_contig1224.1677.1|Name=mRNA_P-lacustris_contig1224.1677.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=366bp|location=Sequence derived from alignment at P-lacustris_contig1224:63500..63700- (Pleurocladia lacustris SAG_25_93)
ATGGCGCAGACAGGGCAAACAGATCAGAACCGCCGGCTCCTTTACGTGGA
GATGTTAAAGAAGGCCACCGCGACCGTGAGCGCTGGGGTGCAGACGGTTC
CTCCTGAGACTATGCCCATCGTACAGACTTTCGAAAGTAGCATGCACACC
GCGGCGATGATTTCGTCGGGGCAGGGGCTGTAAATGGCGCAGACAGGGCA
AACAGATCAGAACCGCCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCA
CCGCGACCGTGAGCGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCCC
ATCGTACAGACTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTC
GGGGCAGGGGCTGTAA
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