mRNA_P-lacustris_contig1224.1674.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: D7FTW8_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW8_ECTSI) HSP 1 Score: 526 bits (1354), Expect = 1.990e-165 Identity = 301/519 (58.00%), Postives = 340/519 (65.51%), Query Frame = 1
Query: 19 ELFAAATGCLDPEIALFYLNRAGDDLTRAVNHYLDSPVG------AFSDYNPRPATAD-----RLFKRQRSTLGKGEQQQQHLNFERVRPSLWDGPSGYSAANGVGLPTCASSRTIDLTDAKPCDGELTTSAAPVGAAAVANATTVGAAPMPSAEWTRISKRCQRQGVQFEDEGFPPQPSSLDGR--RGGSATSRDGKGDGDTQDTEEHACCKCGFLAKVITVSKAGKNQGRLLYGCVTRKCDFFRWADNAPHTQQALSLVWRRFEPPRFKLSAAAA----GAGGSFKPQDIMQGAVGDCWFLAGLAVVSERADLIGRVVGSNGPVADQFGCYEVTLFKDGRWESVIVDSWLPCKDPGRLKGKEKGMDHLPAFAKVSNNQIWPCIVEKAFAKQHGSYNAISGVMCAMLSKPSRGHRQRPLCSITPIPRATGPSS*ASTRQAFQWDVLLHGTLPGA*V--MSDWSPIMPTRSLR*ENSPPE*EELDSRRFETGRGWAAPPQQQNRAGGETGKHRGSPLGL 1518
ELFAAATGCL+P +A YL RAG DLTRAVNH+LDSP + SDY + D R KRQR+ + +QQQQ L FE RP L D S S VG+P SS + AKPCD + A V +TT PSA W I++RCQRQG Q+ED F P PSSLDGR RG SA+SRD G T+ E HA CKCG A+VITV+KAG NQGRL YGC+TRKCDFFRWAD+APHT+QALSLVWRRF PPRFKLS+AA G GGSFKP+ +MQGAVGDCWFLAGLAVVSERADLIGRVVGSNGP+AD+ GC+EV LFKDGRWESV+VDSWLPCKDP RLKGKEKG+DHLPAFAK NNQIWPCIVEKAFAKQHGSY+AISG GH ++T P T + W LL G + + W P R ENSPPE EE SR FETG GWAAPP+Q +R GGET K + GL
Sbjct: 3 ELFAAATGCLNPLVAASYLERAGYDLTRAVNHFLDSPKNDTAASRSHSDYCKSASCGDDNSDPRSLKRQRAAMAGEKQQQQLLKFEHARPLLSD-TSSSSVTASVGMPF--SSGMAEEIHAKPCDS--------IRGAPVPKSTTA-----PSAGWEAIAERCQRQGAQYEDGDFLPVPSSLDGRIGRGCSASSRDCTDGGGTETAEGHARCKCGTSARVITVNKAGVNQGRLFYGCITRKCDFFRWADDAPHTRQALSLVWRRFSPPRFKLSSAAPRGAEGVGGSFKPEHVMQGAVGDCWFLAGLAVVSERADLIGRVVGSNGPLADELGCFEVNLFKDGRWESVVVDSWLPCKDPARLKGKEKGLDHLPAFAKAFNNQIWPCIVEKAFAKQHGSYDAISG-----------GHVCDAFEALTGAPTETVMLD--NDDSEGNWAQLLSFNQAGFPMGCATAWDPT------RCENSPPEFEEPGSRPFETGPGWAAPPRQPSRGGGETAKRLDNLFGL 486
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A0A6H5JHG4_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG4_9PHAE) HSP 1 Score: 476 bits (1224), Expect = 7.640e-147 Identity = 293/542 (54.06%), Postives = 336/542 (61.99%), Query Frame = 3
Query: 1362 AYSVLEVRELPPGVRGARQPSIRDWAGLGSAAAAAEQGRRRDGEASGQPLRLVRVRNPWGKREWTGDWSDKSDKWSDSVRAELGWSKKNDGTFWMTWQDFMIRFQLVDVCKARRDWSHASIATQTLPGPDACSSFRIR-LPP--------SSSSLTAAREEGKDCSTXXXXXXXXXXTWAFVSVVQPTKRGRKDGYWYRALGLLVTETNPATICSGSGGDMVDFTQDMSRRGTLVAASLGGAKRSLSCEVFFESGKSYTASVVCLSGDTDTDGQDHRPPEVLHQPSSPGSTSPGLQGFRGFRVTVYSARPVKQVVPGENRPTSPGYFWVGPSLHQALFHRLLE------VSGRESDSAARNPLQFFPLCKGATLMVVPVGGSAVFFVLVNTADTTSSMEVVVRLTLTSLEGATISMPASHRSTSQISTASSSGTKTSVTICQCPAGSQKIALVLARSADHGSFCYEFAYRMLRPTTTATSSSAAKTLGGDSSAGCAPADE--------AYPRKDGVTAF-GGGVFSAQMLLPGAEGVVRRTG 2915
A++ +VRELPPGVRGARQPSIRDWAGLGSAAAAAEQGRRRDGEA GQPLRLVRVRNPWGKREW GDW +KS+KWSD VRAELGWS++NDGTFWMTWQDFM RFQLVDVCKARRDWSHAS+ T ++P P C SFR+R LPP +SS T ++ +T TWA+++VVQPTKRGRKDG SLSCEVF ESGK+YTASVVCL G+ RP ST GFRGFRVTVYSARP+ Q+VPGE RP SPGYF S+HQAL R E + GR + S RNPLQ F L GA L VVP+ GSA+FF+L+N SS EVV+RLTLTSLEGAT+S P S AS G K ++ CPA SQKIALVLAR+ADHGSF +EF YR+LRP TA +++AA T AG A + A+ T F GGG+FSAQ LLPGAE +VRR G
Sbjct: 64 AFTSTKVRELPPGVRGARQPSIRDWAGLGSAAAAAEQGRRRDGEAPGQPLRLVRVRNPWGKREWIGDWGEKSEKWSDRVRAELGWSEQNDGTFWMTWQDFMSRFQLVDVCKARRDWSHASVTTHSIPSPKTCRSFRVRPLPPPMAANTEGQTSSQTTGKKLAATAATTSPTVAATPTTWAYITVVQPTKRGRKDG-------------------------------------------------SLSCEVFLESGKAYTASVVCLGGEDSDKILSGRPKFSAASTLLAEST-----GFRGFRVTVYSARPL-QIVPGEQRPASPGYFRAESSIHQALSRRSSEEILAKGIVGRRAVSV-RNPLQSFALGGGAALSVVPMEGSALFFLLINV----SSSEVVLRLTLTSLEGATVSTPDSQ--------ASPDG-KGMMSSTMCPARSQKIALVLARTADHGSFSHEFYYRVLRPAPTAPATTAAATATRQGDAGAKAASKTFSSIATRAFAEATAATPFFGGGLFSAQALLPGAEELVRRAG 536
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A0A6H5JEW6_9PHAE (GRF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW6_9PHAE) HSP 1 Score: 244 bits (624), Expect = 6.720e-69 Identity = 154/296 (52.03%), Postives = 172/296 (58.11%), Query Frame = 1
Query: 19 ELFAAATGCLDPEIALFYLNRAGDDLTRAVNHYLDSPVGAF------SDYNPRPATADRLFKRQRSTLGKGEQQQQH-------LNFERVRPSLWDGPSGYSAANGVGLPTCASSRTIDLTDAKPCDGELTTSAAPVGAAAVANATTVGAAPMPSAEWTRISKRCQRQGVQFEDEGFPPQPSSLDGR--RGGSATSRDGKGDGDTQDTEEHACCKCGFLAKVITVSKAGKNQGRLLYGCVTRKCDFFRWADNAPHTQQALSLVWRRFEPPRFKLSAAAA----GAGGSFKPQDIMQ 849
ELFAAATGCLDP +A YL RAG DLTRAVNH+LDSP SDY R L FE R L D S S VG+P+ SS + A PCD L A V TT PSA W ++RCQRQG ++ED F P PSSLDGR RG SA+SRD G T+ TE HA CKCG A+VITV+KAG NQGRL YGCVTRKCDFFRWAD+APHT+QALSLVWRRF PPRFKLS+AA G GGSFKP+ +MQ
Sbjct: 3 ELFAAATGCLDPLVAASYLERAGYDLTRAVNHFLDSPKNGTAASRGSSDYCCRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKFEHARRLLSD-TSSSSVPASVGMPS--SSGMAEEIHAMPCDSVL--------GAPVPKTTTA-----PSAGWEAFAERCQRQGARYEDGDFLPVPSSLDGRIGRGCSASSRDCTGGAGTETTEGHARCKCGTSARVITVNKAGVNQGRLFYGCVTRKCDFFRWADDAPHTRQALSLVWRRFSPPRFKLSSAAPKGEEGGGGSFKPEHVMQ 282
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A4S1N6_OSTLU (Calpain catalytic domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S1N6_OSTLU) HSP 1 Score: 194 bits (494), Expect = 3.650e-47 Identity = 108/235 (45.96%), Postives = 133/235 (56.60%), Query Frame = 1
Query: 499 DEGFPPQPSSLDGRRGGSATSRDGKGDGDTQDTEEHACCKCGFLAKVITVSKAGKNQGRLLYGCV-----TRKCDFFRWA--DNAPHTQQALSLVWRRFEPPRFKLSAAAAGAGGSFKPQDIMQGAVGDCWFLAGLAVVSERADLIGRVVGSN---GPVADQFGCYEVTLFKDGRWESVIVDSWLPCKDPGRLKGKEKGMDHLPAFAKVSNNQIWPCIVEKAFAKQHGSYNAISG 1173
D GF P+S+DGR G T E C+CG AKV VSK G NQGRL YGC +CDFF WA DN HT A SLVW+RF PRFK + + A DI QG+VGDCWFL+ LAVV+ER DL+ V+G + P+ ++ G Y + LF GRW +++VD ++P K +K + PAF K S NQ W IVEKA+AK HGSY AISG
Sbjct: 143 DSGFRAAPASVDGRDGARGTK------------ENVPKCRCGMQAKVKQVSKDGVNQGRLFYGCAKPAAENTRCDFFAWAKGDNLMHTDAAKSLVWKRFSSPRFKFARRTSAA-------DIRQGSVGDCWFLSSLAVVAEREDLLESVIGVSRRFAPIMERVGAYFIRLFLGGRWRAIVVDDFIPVKP-------KKDDEFAPAFGKASKNQTWVSIVEKAYAKAHGSYAAISG 351
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A0A5B8MKZ2_9CHLO (Calpain-type cysteine proteinase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MKZ2_9CHLO) HSP 1 Score: 192 bits (487), Expect = 2.490e-46 Identity = 110/262 (41.98%), Postives = 150/262 (57.25%), Query Frame = 3
Query: 1173 GHVCDAFEALTGAPTETIML--DNTDSEGNWAKLLSFNQAGFPMGCATAWDPTRGLSDVGLVADHAYSVLEVRELPPGVRGARQPSIRDWAGLGSAAAAAEQGRRRDGEASGQPLRLVRVRNPWGKREWTGDWSDKSDKWSDSVRAELGWSKKNDGTFWMTWQDFMIRFQLVDVCKARRDWSHASIATQT-LPGPDACSSFRIRLPPSSSSLTAAREEGKDCSTXXXXXXXXXXTWAFVSVVQPTKRGRKDGYWYRALGLLV 1949
G V +A LT PTE I++ + +SE WA+LLSF FPMGC+T WDPT L VGL HAYS+LEV EL GV +Q I D+ G G A++ E G LRL+R+RNP G+REW GDWSDKSDKW+ ++ A+LG ++KNDGTFWM++QDF+ RF L++VC A RD+ + + + P C+ F++ L TWA++ V+Q +KRGR D YWY + + +
Sbjct: 340 GFVSEAMFDLTSYPTEVILVMDEAFESEVTWARLLSFASLKFPMGCSTQWDPT--LQGVGLAPCHAYSILEVIELS-GVTVGQQLKIDDFFGGGKEREKAKK------EEQGSLLRLLRIRNPHGQREWLGDWSDKSDKWTSTLHAKLGRTEKNDGTFWMSYQDFLCRFALIEVCHAHRDFYNVTKRLRLGTPNSWDCAQFKVDL--------------------------VEATWAYIMVLQKSKRGRLDNYWYTDVSIAI 566
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: C1E493_MICCC (Calpain catalytic domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E493_MICCC) HSP 1 Score: 194 bits (492), Expect = 2.900e-46 Identity = 144/419 (34.37%), Postives = 199/419 (47.49%), Query Frame = 1
Query: 25 FAAATGCLDPEIALFYLNRAGDDLTRAVNHYLDSPVGAFSDYNPRPATADRLFKRQRSTLGKGEQQQQHLNFERVRPSLWDGPSGYSAANGVGLPTCASSR-TIDLTDA----KPCD-GELTTSAAPVGAAAVANATTVGAAPMPSAEWTRISKRCQRQGV---QFEDEGFPPQPSSLDGRRGGSATSRDGKGDGDTQDTEEHACCKCGFLAKVITVSKAGKNQGRLLYGC------------------VTRKCDFFRWADNAPHTQQALSLVWRRFEPPRFKLSAAAAGAGGSFKPQDIMQGAVGDCWFLAGLAVVSERADLIGRVVG--SNGPVADQFGCYEVTLFKDGRWESVIVDSWLPCKD------PGRLK-GKEKGMDHLPAFAKVSNNQIWPCIVEKAFAKQHGSYNAISG 1173
F A TGC A L +L+ AV YLD P+P D + T+ + +Q +L+ E RP + AA G G AS+ DL+ +P + G +T+ + A A TVG W R + + +FED FPP SS+DG R +++E CC+CG AK+ +V K G N GR Y C T C FF+WAD+AP ++ + ++ WRRFEPPRF+L+ A F P D+ QGAVGDCW L+ LAVV+ER DL+ RVVG + P A + G + + LF GRW V VD LP G K G ++ A+++ ++NQ+W +VEKA+AK HGSY+AISG
Sbjct: 26 FRAVTGCDSDAAAKRSLASTRGNLSEAVLRYLDVHAAV-----PKPTHGDDKAE----TVAR---RQANLH-EAKRPRV-------EAAEGTGADGTASAPFAFDLSGLVGTPRPDEHGWVTSMTQELEAEAETVDATVG--------WARTIEALEAAADGRRRFEDASFPPDASSIDGGRA-------------DKESESVPCCRCGARAKIKSVHKDGPNHGRWFYACGNQPANAWAARAMAAKRVPTPTCGFFKWADDAPSSESSKAMRWRRFEPPRFRLTRGTASGAPKFAPSDVRQGAVGDCWLLSALAVVAERQDLVARVVGPAAKCPAATRRGAFLMRLFLAGRWRGVAVDPCLPVSGRSTKVLAGANKVGARSNDEYALAYSRAADNQLWVPLVEKAYAKSHGSYHAISG 403
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A0A7S0X413_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X413_9CHLO) HSP 1 Score: 189 bits (480), Expect = 2.920e-46 Identity = 113/259 (43.63%), Postives = 143/259 (55.21%), Query Frame = 1
Query: 493 FEDEGFPPQPSSLDGRRGGSATSRDGKGDGDTQDTEEHACCKCGFLAKVITVSKAGKNQGRLLYGCV----TRKCDFFRWADNAPHTQQALSLVWRRFEPPRFKL--SAAA-------AGAG----------GSFKPQDIMQGAVGDCWFLAGLAVVSERADLIGRVVGSNG--PVADQFGCYEVTLFKDGRWESVIVDSWLPC--KDPGRLKG-----KEKGMDHLPAFAKVSNNQIWPCIVEKAFAKQHGSYNAISG 1173
FED FPP SS+DGR G GD E C C AK+ V K G NQGR YGC +C FF+WADNAP + + ++ WRRF PPRFKL S +A AG+G G+F+P D+ QGAVGDCW L+ LAVV+ER DL+ RVVG + P A G + + LF G W +V+VD LP K L+G G D A+++ + NQ+W +VEKA+AK HGSY+AISG
Sbjct: 276 FEDAMFPPCASSIDGRGRGE------NGDASHGGRAEVPKCNCNVRAKLCDVHKDGPNQGRFFYGCAGYTAAVRCGFFKWADNAPSSAASQAMRWRRFTPPRFKLVLSGSASHTHMHRAGSGTLGISLGTFLGTFRPSDVRQGAVGDCWLLSALAVVAERQDLVARVVGPSAAHPGASARGAFLLRLFLGGTWRAVVVDPMLPVSGKSTKVLRGANAATSRAGDDFALAYSRAAGNQLWVPLVEKAYAKAHGSYHAISG 528
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A0A1Y5IBU3_OSTTA (Calpain catalytic domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IBU3_OSTTA) HSP 1 Score: 191 bits (484), Expect = 7.500e-46 Identity = 105/242 (43.39%), Postives = 138/242 (57.02%), Query Frame = 1
Query: 472 CQRQGVQ-FEDEGFPPQPSSLDGRRGGSATSRDGKGDGDTQDTEEHACCKCGFLAKVITVSKAGKNQGRLLYGCVTR--KCDFFRWA--DNAPHTQQALSLVWRRFEPPRFKLSAAAAGAGGSFKPQDIMQGAVGDCWFLAGLAVVSERADLIGRVVG---SNGPVADQFGCYEVTLFKDGRWESVIVDSWLPCKDPGRLKGKEKGMDHLPAFAKVSNNQIWPCIVEKAFAKQHGSYNAISG 1173
C+R G + F D+ FPP P S+DGR S + C+CG AKV V K G QGRL YGC R +CDFF W + HT A +L W+RF PPRFK + + A DI QG+VGDCWFL+ LAV++ER DL+ +VVG + V ++ G + V LF GRW +++VD LP K P K E + AF++ +NNQ+W + EKA+AK HGSY+AISG
Sbjct: 144 CERVGEEGFRDDAFPPAPGSVDGRGNASGNAPQ---------------CRCGLQAKVKQVHKDGVTQGRLFYGCEKRVDRCDFFAWCSKETLVHTDAAKALRWKRFAPPRFKFARRTSAA-------DIRQGSVGDCWFLSSLAVIAEREDLLEQVVGVSRRHAGVFEKHGAWFVRLFLGGRWRAIVVDDMLPVKTPKTKKDDEYSL----AFSRAANNQLWVSLTEKAYAKAHGSYSAISG 359
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A0A7S3FQR2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQR2_9CHLO) HSP 1 Score: 186 bits (472), Expect = 2.110e-45 Identity = 142/394 (36.04%), Postives = 180/394 (45.69%), Query Frame = 1
Query: 16 MELFAAATGCLDPEIALFYLNRAGDDLTRAVNHYLDSPVGAFSDYNPRPATADRLFKRQRSTLGKGEQQQQHLNFERVRPSLWDGPSGYSAANGVGLPTCASSR-TIDLTDAKPCDGELTTSAAPVGAAAVANATTVGAAPMPSAEWTRISKRCQRQGVQFEDEGFPPQPSSLDGRRGGSATSRDGKGDGDTQDTEEHACCKCG--FLAKVITVSKAGKNQGRLLYGCVTRKCDFFRWADNA-PHTQQALSLVWRRFEPPRFKLSAAAAGAGGSFKPQDIMQGAVGDCWFLAGLAVVSERADLIGRVVGSNGPVADQ---FGCYEVTLFKDGRWESVIVDSWLPCKDPGRLKGKEKGMDHLPAFAKV-SNNQIWPCIVEKAFAKQHGSYNAISG 1173
ME F A D A L A ++ RAVN Y + V F D + RP D +T E S + PT A R D D L A PVG A+V+ + S ++ R + C+ G F D FPP S+DGR+ G + C+C AK+ V K GKNQGR YGC TRKC+FFRWA A HT QA L WRRF+ K S G F+ QDI+QGA GDCWFLAGL+V++ R DL+ ++ P+A Q G ++V LF G W SVIVD+ LP + G PAFAK+ ++WP +VEKA+AK GSY ISG
Sbjct: 2 MEAFLAVVPECDRAAARRVLEAADWNVERAVNFYFEGRV--FVDVDGRPEPTDPT-----TTKESREXXXXXXXXXXXXXXXXXXXXXVSVSGRRPRPTVALVRGAADCLD-------LFAGAVPVGEASVSELESSEIGSEASEQFRRAVRGCEDAGACFTDPDFPPTAQSIDGRQVGRNFGNN-----------VSIVCQCDPPSRAKLCKVRKDGKNQGRNFYGCATRKCNFFRWAGKALRHTDQASRLTWRRFDGQEHKAS-------GRFRAQDILQGATGDCWFLAGLSVIAVREDLVRKIF----PLAAQRPDLGLHQVNLFAHGGWSSVIVDNCLPINEKGE-----------PAFAKLPKGTELWPALVEKAYAKLGGSYLGISG 348
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Match: A0A7S0PKS3_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PKS3_9CHLO) HSP 1 Score: 187 bits (476), Expect = 1.200e-44 Identity = 107/249 (42.97%), Postives = 134/249 (53.82%), Query Frame = 1
Query: 487 VQFEDEGFPPQPSSLDGRRGGSATSRDGKGDGDTQDTEEHACCKCGFLAKVITVSKAGKNQGRLLYGCV---------------TRKCDFFRWA--DNAPHTQQALSLVWRRFEPPRFKLSAAAAGAGGSFKPQDIMQGAVGDCWFLAGLAVVSERADLIGRVVGSN---GPVADQFGCYEVTLFKDGRWESVIVDSWLPCKDPGRLKGKEKGMDHLPAFAKVSNNQIWPCIVEKAFAKQHGSYNAISG 1173
V + D+ F P+PSS+DGRRG +G DT CKCG A V V K GKN GRL YGC T +CDFF WA + HT A L W R PPRFK + + A DI QG+VGDCWFL+ LAVV+ER DL+ V+G + + ++ G Y V F GRW +++VD LP KD K + + PAF++ +NNQ W I EKA+AK HGSY AISG
Sbjct: 185 VPWSDDDFAPEPSSIDGRRGA-------RGSDDTVPK-----CKCGVQAAVKRVHKDGKNNGRLFYGCAKPTLAHRGAGAPSANTERCDFFAWAKEETLKHTDAATRLRWERLAPPRFKFARRVSAA-------DIRQGSVGDCWFLSALAVVAEREDLLQSVIGVSRDLSTIMERVGSYFVRFFLGGRWRAIVVDDHLPIKDVAG-KARTPVDERTPAFSRAANNQTWVSITEKAYAKAHGSYGAISG 413 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1224.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1224.1674.1 >prot_P-lacustris_contig1224.1674.1 ID=prot_P-lacustris_contig1224.1674.1|Name=mRNA_P-lacustris_contig1224.1674.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=597bp MLDNTDSEGNWAKLLSFNQAGFPMGCATAWDPTRGLSDVGLVADHAYSVLback to top mRNA from alignment at P-lacustris_contig1224:21486..44200+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1224.1674.1 ID=mRNA_P-lacustris_contig1224.1674.1|Name=mRNA_P-lacustris_contig1224.1674.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=22715bp|location=Sequence derived from alignment at P-lacustris_contig1224:21486..44200+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1224:21486..44200+ >mRNA_P-lacustris_contig1224.1674.1 ID=mRNA_P-lacustris_contig1224.1674.1|Name=mRNA_P-lacustris_contig1224.1674.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3582bp|location=Sequence derived from alignment at P-lacustris_contig1224:21486..44200+ (Pleurocladia lacustris SAG_25_93)back to top |