mRNA_P-lacustris_contig1222.1665.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1222.1665.1
Unique NamemRNA_P-lacustris_contig1222.1665.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1222.1665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1222contigP-lacustris_contig1222:47897..48558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size662
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1222.1665.1prot_P-lacustris_contig1222.1665.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1222 47900..48343 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.0699978-UTR-P-lacustris_contig1222:47896..478991622815541.0699978-UTR-P-lacustris_contig1222:47896..47899Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 47897..47899 +
1693493599.1933088-UTR-P-lacustris_contig1222:47896..478991693493599.1933088-UTR-P-lacustris_contig1222:47896..47899Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 47897..47899 +
1622815541.090664-UTR-P-lacustris_contig1222:48343..485581622815541.090664-UTR-P-lacustris_contig1222:48343..48558Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 48344..48558 +
1693493599.20899-UTR-P-lacustris_contig1222:48343..485581693493599.20899-UTR-P-lacustris_contig1222:48343..48558Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 48344..48558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.080363-CDS-P-lacustris_contig1222:47899..483431622815541.080363-CDS-P-lacustris_contig1222:47899..48343Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1222 47900..48343 +
1693493599.201647-CDS-P-lacustris_contig1222:47899..483431693493599.201647-CDS-P-lacustris_contig1222:47899..48343Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1222 47900..48343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1222.1665.1

>prot_P-lacustris_contig1222.1665.1 ID=prot_P-lacustris_contig1222.1665.1|Name=mRNA_P-lacustris_contig1222.1665.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=148bp
MTKKCDDVQGTTRGVWTKREEGEKERWVGGAGGKGAKRQRQEEAGGATTA
VARGATKQTTQRLCCSSENKKRDTPLSKPHTSTHLVPYKRVITHVPWHGH
VREVWTNPSKLRNHRTMKTWMIEIRALPCCPWLPPPLREVFVALAQI*
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mRNA from alignment at P-lacustris_contig1222:47897..48558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1222.1665.1 ID=mRNA_P-lacustris_contig1222.1665.1|Name=mRNA_P-lacustris_contig1222.1665.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=662bp|location=Sequence derived from alignment at P-lacustris_contig1222:47897..48558+ (Pleurocladia lacustris SAG_25_93)
CCCATGACCAAGAAATGCGATGACGTGCAAGGGACAACACGTGGCGTGTG
GACAAAGCGGGAAGAGGGGGAGAAGGAGAGGTGGGTGGGGGGAGCAGGAG
GCAAAGGAGCGAAACGACAGCGACAAGAAGAAGCTGGCGGAGCGACGACA
GCAGTCGCGAGAGGCGCTACAAAACAAACAACACAGCGGCTTTGTTGCAG
TTCAGAAAATAAGAAAAGGGACACACCTTTGAGCAAACCCCACACCTCAA
CACACCTCGTACCTTACAAAAGAGTAATAACCCATGTGCCATGGCATGGA
CACGTTCGTGAAGTCTGGACTAATCCATCAAAGCTACGAAACCACCGAAC
CATGAAAACGTGGATGATCGAAATAAGAGCCCTTCCCTGCTGTCCTTGGT
TGCCACCACCCTTGAGAGAAGTCTTTGTCGCTTTAGCCCAGATCTAAAAC
ATATCTGCGGCGTAACACTCTCACCTACGCATCGACATCGGAATTTGGGC
GGGGTACTTCACCTGCCCAGACTCTCCTGCTTGCTTAACCTACCCACACG
GTCATGACCACAAACGTTTGACCCTACTGTATTTGCAAACACTCATCACC
TTCCGCGCACCTTGAACTTTTGAGCAACGTCTTTGAGTTCGACGAGGCCG
GCCTTGGCATCC
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Coding sequence (CDS) from alignment at P-lacustris_contig1222:47897..48558+

>mRNA_P-lacustris_contig1222.1665.1 ID=mRNA_P-lacustris_contig1222.1665.1|Name=mRNA_P-lacustris_contig1222.1665.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=888bp|location=Sequence derived from alignment at P-lacustris_contig1222:47897..48558+ (Pleurocladia lacustris SAG_25_93)
ATGACCAAGAAATGCGATGACGTGCAAGGGACAACACGTGGCGTGTGGAC
AAAGCGGGAAGAGGGGGAGAAGGAGAGGTGGGTGGGGGGAGCAGGAGGCA
AAGGAGCGAAACGACAGCGACAAGAAGAAGCTGGCGGAGCGACGACAGCA
GTCGCGAGAGGCGCTACAAAACAAACAACACAGCGGCTTTGTTGCAGTTC
AGAAAATAAGAAAAGGGACACACCTTTGAGCAAACCCCACACCTCAACAC
ACCTCGTACCTTACAAAAGAGTAATAACCCATGTGCCATGGCATGGACAC
GTTCGTGAAGTCTGGACTAATCCATCAAAGCTACGAAACCACCGAACCAT
GAAAACGTGGATGATCGAAATAAGAGCCCTTCCCTGCTGTCCTTGGTTGC
CACCACCCTTGAGAGAAGTCTTTGTCGCTTTAGCCCAGATCTAAATGACC
AAGAAATGCGATGACGTGCAAGGGACAACACGTGGCGTGTGGACAAAGCG
GGAAGAGGGGGAGAAGGAGAGGTGGGTGGGGGGAGCAGGAGGCAAAGGAG
CGAAACGACAGCGACAAGAAGAAGCTGGCGGAGCGACGACAGCAGTCGCG
AGAGGCGCTACAAAACAAACAACACAGCGGCTTTGTTGCAGTTCAGAAAA
TAAGAAAAGGGACACACCTTTGAGCAAACCCCACACCTCAACACACCTCG
TACCTTACAAAAGAGTAATAACCCATGTGCCATGGCATGGACACGTTCGT
GAAGTCTGGACTAATCCATCAAAGCTACGAAACCACCGAACCATGAAAAC
GTGGATGATCGAAATAAGAGCCCTTCCCTGCTGTCCTTGGTTGCCACCAC
CCTTGAGAGAAGTCTTTGTCGCTTTAGCCCAGATCTAA
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