mRNA_P-lacustris_contig122.1651.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig122.1651.1
Unique NamemRNA_P-lacustris_contig122.1651.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig122.1651.1 vs. uniprot
Match: A0A6H5K387_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K387_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.980e-11
Identity = 38/75 (50.67%), Postives = 42/75 (56.00%), Query Frame = 2 
Query:    2 VSGHRVTGGKQRPYRCSGAVMTQGEKGIRGCPVFVRAFKRADGHFYVTVCSTNQHRHA*RRGKQLCLAL*VMGAA 226
            VS HRVTGG QR YRCSGA+M +G K   GC   VRA KR D HF+VT  S         + K    AL   GAA
Sbjct:   52 VSDHRVTGGHQRLYRCSGAIMEKGTKNTGGCQAHVRANKRRDKHFHVTSASFEHQNCVGGKKKPSVAALAAEGAA 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig122.1651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K387_9PHAE1.980e-1150.67MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig122contigP-lacustris_contig122:226952..227260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.6006827-CDS-P-lacustris_contig122:226951..2272601622815537.6006827-CDS-P-lacustris_contig122:226951..227260Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig122 226952..227260 +
1693493597.1597862-CDS-P-lacustris_contig122:226951..2272601693493597.1597862-CDS-P-lacustris_contig122:226951..227260Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig122 226952..227260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig122.1651.1prot_P-lacustris_contig122.1651.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig122 226952..227260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig122.1651.1

>prot_P-lacustris_contig122.1651.1 ID=prot_P-lacustris_contig122.1651.1|Name=mRNA_P-lacustris_contig122.1651.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=103bp
GQWSQGDRREAKALSLLRCRDDTGGEGYQGMSGFRARLQTRRWTFLCHRV
LNQSAQTRVTSWETTLSGTLSHGSSVVLAQYIFQVITLKPCSDYCSPAAG
NVT
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mRNA from alignment at P-lacustris_contig122:226952..227260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig122.1651.1 ID=mRNA_P-lacustris_contig122.1651.1|Name=mRNA_P-lacustris_contig122.1651.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=309bp|location=Sequence derived from alignment at P-lacustris_contig122:226952..227260+ (Pleurocladia lacustris SAG_25_93)
GGTCAGTGGTCACAGGGTGACCGGCGGGAAGCAAAGGCCTTATCGCTGCT
CCGGTGCCGTGATGACACAGGGGGAGAAGGGTATCAGGGGATGTCCGGTT
TTCGTGCGCGCCTTCAAACGCGCCGATGGACATTTCTATGTCACCGTGTG
CTCAACCAATCAGCACAGACACGCGTGACGTCGTGGGAAACAACTCTGTC
TGGCACTCTGAGTCATGGGAGCAGCGTAGTTCTTGCACAGTATATATTTC
AGGTCATCACGCTTAAACCTTGCTCTGACTACTGCTCACCGGCAGCGGGC
AACGTGACG
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Coding sequence (CDS) from alignment at P-lacustris_contig122:226952..227260+

>mRNA_P-lacustris_contig122.1651.1 ID=mRNA_P-lacustris_contig122.1651.1|Name=mRNA_P-lacustris_contig122.1651.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=618bp|location=Sequence derived from alignment at P-lacustris_contig122:226952..227260+ (Pleurocladia lacustris SAG_25_93)
GGTCAGTGGTCACAGGGTGACCGGCGGGAAGCAAAGGCCTTATCGCTGCT
CCGGTGCCGTGATGACACAGGGGGAGAAGGGTATCAGGGGATGTCCGGTT
TTCGTGCGCGCCTTCAAACGCGCCGATGGACATTTCTATGTCACCGTGTG
CTCAACCAATCAGCACAGACACGCGTGACGTCGTGGGAAACAACTCTGTC
TGGCACTCTGAGTCATGGGAGCAGCGTAGTTCTTGCACAGTATATATTTC
AGGTCATCACGCTTAAACCTTGCTCTGACTACTGCTCACCGGCAGCGGGC
AACGTGACGGGTCAGTGGTCACAGGGTGACCGGCGGGAAGCAAAGGCCTT
ATCGCTGCTCCGGTGCCGTGATGACACAGGGGGAGAAGGGTATCAGGGGA
TGTCCGGTTTTCGTGCGCGCCTTCAAACGCGCCGATGGACATTTCTATGT
CACCGTGTGCTCAACCAATCAGCACAGACACGCGTGACGTCGTGGGAAAC
AACTCTGTCTGGCACTCTGAGTCATGGGAGCAGCGTAGTTCTTGCACAGT
ATATATTTCAGGTCATCACGCTTAAACCTTGCTCTGACTACTGCTCACCG
GCAGCGGGCAACGTGACG
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