mRNA_P-lacustris_contig1217.1630.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1217.1630.1
Unique NamemRNA_P-lacustris_contig1217.1630.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1217.1630.1 vs. uniprot
Match: D8LU33_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU33_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-16
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:  175 EDEVMVDSADVAKLLGGGSDGSDEEEGLHHHAGADKALGALLELKKSGRKKGELEARRQGYQIRLRA 375
            +DEVMVD +D+  LL G  +    EEG  HHAGADKALGAL+ LKK GRKKG  EA RQGYQIRLRA
Sbjct:  886 KDEVMVDPSDMEALLAGEEEDEGGEEGFQHHAGADKALGALIGLKKLGRKKGAQEAERQGYQIRLRA 952
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1217.1630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU33_ECTSI1.770e-1667.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1217contigP-lacustris_contig1217:24465..25726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D8LU33
Preferred nameMYBBP1A
KEGG koko:K02331,ko:K11836
Hectar predicted targeting categoryother localisation
GOsGO:0000182,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003714,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006091,GO:0006139,GO:0006259,GO:0006351,GO:0006355,GO:0006356,GO:0006360,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0007154,GO:0007165,GO:0007623,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0009058,GO:0009059,GO:0009267,GO:0009303,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0015980,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022900,GO:0022904,GO:0023052,GO:0031074,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032922,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035556,GO:0040029,GO:0042149,GO:0042564,GO:0042594,GO:0042790,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045333,GO:0045787,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045943,GO:0046483,GO:0046872,GO:0046914,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0051726,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070888,GO:0071156,GO:0071158,GO:0071496,GO:0071704,GO:0071897,GO:0072331,GO:0072332,GO:0080090,GO:0090068,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097659,GO:0098781,GO:0140097,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901836,GO:1901838,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2000209,GO:2000210,GO:2001141
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsKOG1926@1,KOG1926@2759
EC2.7.7.7,3.4.19.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03400,ko04147
Exons3
Model size376
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1217.1630.1prot_P-lacustris_contig1217.1630.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1217 24466..25726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.752761-CDS-P-lacustris_contig1217:24465..246571622815535.752761-CDS-P-lacustris_contig1217:24465..24657Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1217 24466..24657 -
1693493596.014127-CDS-P-lacustris_contig1217:24465..246571693493596.014127-CDS-P-lacustris_contig1217:24465..24657Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1217 24466..24657 -
1622815535.7665436-CDS-P-lacustris_contig1217:25525..255581622815535.7665436-CDS-P-lacustris_contig1217:25525..25558Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1217 25526..25558 -
1693493596.0241096-CDS-P-lacustris_contig1217:25525..255581693493596.0241096-CDS-P-lacustris_contig1217:25525..25558Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1217 25526..25558 -
1622815535.7781372-CDS-P-lacustris_contig1217:25576..257261622815535.7781372-CDS-P-lacustris_contig1217:25576..25726Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1217 25577..25726 -
1693493596.0317545-CDS-P-lacustris_contig1217:25576..257261693493596.0317545-CDS-P-lacustris_contig1217:25576..25726Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1217 25577..25726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1217.1630.1

>prot_P-lacustris_contig1217.1630.1 ID=prot_P-lacustris_contig1217.1630.1|Name=mRNA_P-lacustris_contig1217.1630.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=125bp
DGDDDADAAAADDDDDDDEQEAENGKANGKTSGAKEDKEDESSSDDNDND
NDAEEEGNEDEVMVDSADVAKLLGGGSDGSDEEEGLHHHAGADKALGALL
ELKKSGRKKGELEARRQGYQIRLRA
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mRNA from alignment at P-lacustris_contig1217:24465..25726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1217.1630.1 ID=mRNA_P-lacustris_contig1217.1630.1|Name=mRNA_P-lacustris_contig1217.1630.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1262bp|location=Sequence derived from alignment at P-lacustris_contig1217:24465..25726- (Pleurocladia lacustris SAG_25_93)
GACGGCGACGACGATGCTGATGCTGCTGCTGCTGATGATGATGATGATGA
TGATGAACAAGAGGCGGAGAACGGCAAGGCTAACGGTAAGACGAGCGGAG
CGAAGGAAGACAAGGAAGACGAGAGCAGCTCCGACGACAACGACAACGAC
GACGACAACGACAACGACAACGACGCCGAGGAGGAGGGAAACGAAGACGA
GGTGAGGACAACTCAGACAAAAAAAATGTAGAAGGTTGTTCTTGCGATGT
GGTCTGTATTGAATGCTTTTTTCACCTCTGTGTGTTTTTTTTTTCTTCAA
AATCTGGCATGTCTCTTTTTTGTTTGCCACGACTTTAGCGCATGTCAGCT
GACCGTTGTTTCAAGGGCGGAAACTCATGACCATACTACGATACGACATG
CTACCATACCATACCGTATCTCGCATCGTATACTAACATGAAAATTCTGT
TTCTTTTCCGGGAGGGCTTAAAGATGCATACGTTTACAGGCGGTTTCTAG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTTTTCGTCCCATTT
ATTTTGACGACAGTCCCCCCGATCAAGGTGAGACGTGTACTACACGTTGC
GGTGTATTCACGGACTACACTTTTCAGTGTATTTTTTATTTTCACTAGAA
CCAACCGGGGTCACACAGGAGGGGGTAAACACAGGGGCTATTTCTTCTTT
TCTTGACTTTTTTTGCCCCACCTTCCTCCTGCGGTGCGTGCCTTAATTTT
TATCGCGAGAAGGGTTCGGCCGTCCCTTTCCCTCGTCAACGTTGCTAACT
AACGTCGAAGTTTGGTACTCACGAGCTTTTCAGCTTATTTCGCTTTCACC
CCCAAAGTTGCAAATTTTCACCCCAGGGGGATTCGAACTCACGACCTTTG
CGCTAGATGGCTTCGAGGCTACCACTAGACCACCGGGGCTAGTGTTAACA
AGTAAATACAGCACTAACGACGACGACGACGACAACAACAACAACAACAA
CAACAGCAACAAAGATGCCTCTTTTCTTCCTACCCTGCACTGCAAAACCA
ACGGTCGCTATCCATCCAGGTGATGGTGGACTCAGCGGACGTGGCGAAAC
TCTTGGGAGGCGGCTCCGACGGCTCCGACGAGGAAGAGGGCTTGCATCAC
CACGCCGGCGCAGACAAGGCCCTGGGAGCACTCCTCGAGCTCAAGAAGTC
GGGCCGTAAGAAGGGGGAGCTGGAGGCTCGGCGTCAGGGTTATCAGATAC
GGCTTCGCGCCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1217:24465..25726-

>mRNA_P-lacustris_contig1217.1630.1 ID=mRNA_P-lacustris_contig1217.1630.1|Name=mRNA_P-lacustris_contig1217.1630.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=750bp|location=Sequence derived from alignment at P-lacustris_contig1217:24465..25726- (Pleurocladia lacustris SAG_25_93)
GACGGCGACGACGATGCTGATGCTGCTGCTGCTGATGATGATGATGATGA
TGATGAACAAGAGGCGGAGAACGGCAAGGCTAACGGTAAGACGAGCGGAG
CGAAGGAAGACAAGGAAGACGAGAGCAGCTCCGACGACAACGACAACGAC
GACGGCGACGACGATGCTGATGCTGCTGCTGCTGATGATGATGATGATGA
TGATGAACAAGAGGCGGAGAACGGCAAGGCTAACGGTAAGACGAGCGGAG
CGAAGGAAGACAAGGAAGACGAGAGCAGCTCCGACGACAACGACAACGAC
AACGACGCCGAGGAGGAGGGAAACGAAGACGAGAACGACGCCGAGGAGGA
GGGAAACGAAGACGAGGTGATGGTGGACTCAGCGGACGTGGCGAAACTCT
TGGGAGGCGGCTCCGACGGCTCCGACGAGGAAGAGGGCTTGCATCACCAC
GCCGGCGCAGACAAGGCCCTGGGAGCACTCCTCGAGCTCAAGAAGTCGGG
CCGTAAGAAGGGGGAGCTGGAGGCTCGGCGTCAGGGTTATCAGATACGGC
TTCGCGCCGTGATGGTGGACTCAGCGGACGTGGCGAAACTCTTGGGAGGC
GGCTCCGACGGCTCCGACGAGGAAGAGGGCTTGCATCACCACGCCGGCGC
AGACAAGGCCCTGGGAGCACTCCTCGAGCTCAAGAAGTCGGGCCGTAAGA
AGGGGGAGCTGGAGGCTCGGCGTCAGGGTTATCAGATACGGCTTCGCGCC
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