mRNA_P-lacustris_contig1215.1621.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1215.1621.1
Unique NamemRNA_P-lacustris_contig1215.1621.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: D7FNL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL0_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 3.110e-108
Identity = 155/184 (84.24%), Postives = 169/184 (91.85%), Query Frame = 1 
Query:    1 MYSTKRINKNIVEGNRFITVGDPYKELRKLPGRWKGKQFKTEGCPTNADNGNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQTSEGKRMGPYR 552
            MYSTKR+NKNIVEGNRFI+VGDPYKELR+LPGRWKGKQF+TEGCP NADNGNF KL YSSEPFQE E+FT+TQP +KRNLGFGTKDAFK GEFT T RT+QYREML QEQRLM++SR+V+ E EK+ Q KAKHASSRRFV+GKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQ S GKRMGPYR
Sbjct:    1 MYSTKRVNKNIVEGNRFISVGDPYKELRRLPGRWKGKQFQTEGCPANADNGNFAKLKYSSEPFQETERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYR 184
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: A0A836CAI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI9_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.190e-49
Identity = 92/185 (49.73%), Postives = 121/185 (65.41%), Query Frame = 1 
Query:    1 MYSTKRINKNIVEGNRFITVGDPYKELRK-LPGRWKGKQFKTEGCPTNADNGNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQTSEGKRMGPYR 552
            MYSTKR+N  I EG  +I+VGDPY+  +  LPGRWKGK FK    P NA+NGNF+KL Y S  FQE+E++++TQP  K+  GFGTKDAF+ GEFT T RTEQYR+ L +EQ +M    D   + E + + + K  S+R F +G  E  HLYDVGR+   +F+P    D FY    +  +RMG +R
Sbjct:    1 MYSTKRVNDKIAEG--YISVGDPYRGTKDTLPGRWKGKGFKVLQVPVNAENGNFSKLEYKSCAFQEMERYSKTQPDRKK--GFGTKDAFRRGEFTATIRTEQYRDQLRKEQTIMAKFCDPVRDSEIIRRAEEKQRSTRTFCEGLPETDHLYDVGRTQVTKFDPKHSRDRFYTPDINRERRMGGFR 181
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: D7G5S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S6_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.920e-48
Identity = 84/175 (48.00%), Postives = 114/175 (65.14%), Query Frame = 1 
Query:   31 IVEGNRFITVGDPYKELRK-LPGRWKGKQFKTEGCPTNADNGNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQTSEGKRMGPYR 552
            +V+G  +I++GD YK  +  LP RWKGK       P NA+NGNF++L Y SEP+ ++E+F++TQP +KR LGFGTKDAF+ GEFT T RTEQYR++L  E+ +M+  RD   +    ++ +   A  R F  G +EI+HLYDVGRS   EF+P    D FY     + KR GPYR
Sbjct:    1 MVDGGSYISIGDMYKGNKIILPDRWKGKGLSVPQLPKNAENGNFSRLEYRSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEKHRDPAKDQAAAQKYEKDCAEHRAFPDGLKEIEHLYDVGRSQVTEFDPKNSRDRFYTLSIGQEKRRGPYR 175
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: A0A6V1R9I1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9I1_HETAK)

HSP 1 Score: 160 bits (406), Expect = 1.090e-45
Identity = 84/184 (45.65%), Postives = 115/184 (62.50%), Query Frame = 1 
Query:    1 MYSTKRINKNIVEGNRFITVGDPYKELRKLPGRWKGKQFKTEGCPTNADNGNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQTSEGKRMGPYR 552
            MY+TKRINKN ++ + +I++ DPY E RKLP RWK KQF     P   + G F K TY+ +P++E   F + QP++ R LGFGTKDA K GEFT T RTEQYRE L +EQR++D  RD   E   +E+ + K    R F +G  E + LYD+GR    +F+P +  D FY  +    KR+G ++
Sbjct:    1 MYATKRINKNKIDVS-YISIQDPYVENRKLPPRWKEKQFAVAHLPNPENGGYFAKKTYAPDPYKEAVHFIKEQPADSRKLGFGTKDASKRGEFTATIRTEQYRETLKKEQRILDHQRDPAAETMTLERAR-KREEERSFPEGLSETRRLYDIGRQNVTDFDPRQSRDTFYTLRKDRPKRLGHHQ 182
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: A0A7S2EF12_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EF12_TRICV)

HSP 1 Score: 139 bits (351), Expect = 3.260e-37
Identity = 80/176 (45.45%), Postives = 114/176 (64.77%), Query Frame = 1 
Query:    1 MYSTKRINKNIVEGNR--FITVGDPYKE-LRKLPGRWKGKQFKTEGCPTNADNGNFTKLTYSSEPFQE-IEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHASSRRFVKGKE--EIKHLYDVGRSLQNEFNPYRKHDAFY 510
            MYSTK I+KNI    +  + ++GDPY+  + +LP RWK KQF T  CP NA NG F K  Y+ +P+ E  EQ+++TQP  KR LGFG+ DAFK GEFT    TE+YR ++ QEQ+L+DS RD   E E +++++ +  ++ +   GK+  E K LYDVGR+    ++P    D+FY
Sbjct:    1 MYSTKSIHKNINPNYQQTYTSIGDPYRNSVEELPSRWKKKQFVTPKCPKNAYNGLFVKPQYTPDPYTERAEQYSKTQPLEKRRLGFGSHDAFKPGEFTSDKATERYRNVVRQEQKLLDSVRDEMRERELIQKLRDRPRTTPKDKLGKDLKEPKFLYDVGRTHVTLYSPQSTRDSFY 176
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: F0YHZ6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHZ6_AURAN)

HSP 1 Score: 137 bits (345), Expect = 1.860e-36
Identity = 89/193 (46.11%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:    1 MYSTKRINKNI-VEGNRFITVGDPYKELR-KLPGRWKGKQFKTEGCPTNADNGNF----TKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQ---TSEGKRMGPYR 552
            MY+TK +NKN+ V+  R+ITVGDPY   + KLP RWK KQF     P+NA  G F       +Y SE + E   + +TQP +KR LGFGT DA +  EF+ T RTEQYRE L +E R  ++  D     E M   K ++A  ++FV+ K+EI +LYDVGRS+  EF+P    D FY  +   T E KRMG  R
Sbjct:    1 MYTTKFMNKNVTVDNGRYITVGDPYIGTKDKLPLRWKEKQFHVPQVPSNAGEGYFGFSGKAFSYQSELYTEQRPYMKTQPPDKRKLGFGTHDASRRDEFSQTIRTEQYRETLKKEGRANNNGYDEDAIEELM---KKENAKVKKFVETKKEIGNLYDVGRSIHTEFDPKNGRDQFYSMKHGYTYE-KRMGNNR 189
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: H3HED5_PHYRM (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3HED5_PHYRM)

HSP 1 Score: 118 bits (295), Expect = 4.410e-29
Identity = 79/203 (38.92%), Postives = 112/203 (55.17%), Query Frame = 1 
Query:    1 MYSTKRINKNIVEGNRFITVGDPYKELRKLPG---RWKGKQFKTEGCPTNAD-NGNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSR--DVQVELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQT--SEGKRM-GPYR---EHGGLGS 573
            MYSTK +NKNI +   ++T+GDPY++   + G   R KGKQ  T       + +G F K TYSS+P Q+   + ++QP + R  GFG+KDA +  EF    RTEQYRE L  E +++D  +  D     + ++ +   H     F +G +E KHLYD+GRS   EFN     D FY  +   S+ KR  GP+    E  GLG+
Sbjct:    1 MYSTKVLNKNIAQS--YLTIGDPYRDPHLIEGKNSRHKGKQVLTVPAKNTCNGSGYFDKKTYSSDPLQDNTAYLKSQPMDSRKSGFGSKDASRRDEFMSHIRTEQYRETLHTEVKILDKQKQNDPPGLFDALDSLNQSHT----FPEGLQETKHLYDIGRSQNTEFNQKSHRDTFYTMRVGNSQYKRNNGPFMLTSESIGLGA 197
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: A0A0P1ATT3_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATT3_PLAHL)

HSP 1 Score: 113 bits (282), Expect = 3.700e-27
Identity = 80/206 (38.83%), Postives = 110/206 (53.40%), Query Frame = 1 
Query:    1 MYSTKRINKNIVEGNRFITVGDPYKELRKLPG---RWKGKQ-FKTEGCPTNADNGNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRD-----VQVELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQT--SEGKRM-GPYR---EHGGLGS 573
            MYSTK +NKNI E   ++T+GDPY++   + G   R KGKQ F      T+   G F K +Y+S+P Q+   + ++QP + R  GFG+KDA +  EF    RTEQYRE L  E +++D  +          L  + Q       SR F +G  + KHLYD+GRS   EFN     D FY  +   S+ KR  GP+    E  GLG+
Sbjct:    1 MYSTKVLNKNIAES--YLTIGDPYRDPHIIEGKSSRHKGKQIFTVPAKDTSNGLGYFEKKSYTSDPLQDNTAYLKSQPMDTRKSGFGSKDASRRDEFMSHIRTEQYRETLHTENKILDKQKQKDPPYFSAALNSLNQ-------SRDFPEGLCKTKHLYDIGRSQNTEFNQKSHRDTFYTMRAGNSQYKRNNGPFMLTSESIGLGA 197
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: A0A8J2SVQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVQ1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.880e-26
Identity = 74/201 (36.82%), Postives = 105/201 (52.24%), Query Frame = 1 
Query:    1 MYSTKRINKNI-VEGNRFITVGDPY-KELRKLPGRWKGKQFKTEGCPTNADNGNFTKL----TYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHAS---------SRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQTSEGKRM--GPYR 552
            MY+ K  +  +  E  R+I++GDPY  E  +LP RWK KQ  T   P NA NG F  +     Y  + + E   + +TQP + R LGFGT DA K  EFT   RTEQYR++L +E+R++  +   +  L   EQ++  H            +R V G      LYD+GRS + +F+P  K D FY+   +  + M  G YR
Sbjct:   30 MYADKFTHPRLQCEAGRYISIGDPYVDEAERLPARWKEKQMGTTMYPKNAGNGYFGNMGKPFMYMPDKYVEQLPYAKTQPYDTRKLGFGTHDASKRDEFTDRVRTEQYRDLLKREKRILQRNEQKRGGL--AEQIRKAHKKLAEAAVEEERQREVCGLSAAPFLYDIGRSRETQFDPKTKTDCFYNAYQARKREMRRGGYR 228
[Close]
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Match: A0A662WNB9_9STRA (Aldo_ket_red domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WNB9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.600e-24
Identity = 77/216 (35.65%), Postives = 110/216 (50.93%), Query Frame = 1 
Query:    1 MYSTKRINKNIVEGNRFITVGDPYKELRKLPG----------------RWKGKQFKTEGCPTNAD-NGNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTEQYREMLLQEQRLMDSSRDVQV--ELEKMEQVKAKHASSRRFVKGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQT--SEGKRM-GPYR---EHGGLGS 573
            MYS K +NKNI +   ++T+GDPY++   + G                R KGKQ  T       + +G F K TY+S+P Q+   +  +QP + R  GFG+KDA +  EF    RTEQYRE L  E +++D  +  +     E ++ +   H     F +G +E KHLYD+GRS   EFN     D FY  +   S+ KR  GP+    E  GLG+
Sbjct:  350 MYSNKVLNKNIAQS--YLTIGDPYRDPHLIEGKSLCVLRLLSISGKNSRHKGKQILTVPAKNTCNGSGYFEKKTYASDPLQDNTAYLVSQPMDSRKAGFGSKDASRRDEFMSHVRTEQYRETLDTEMKILDKQKKSESPDRFEALDSLNQSHT----FPEGLQETKHLYDIGRSQNTEFNQKSHRDTFYTMRVGNSQYKRNNGPFMLTSESIGLGA 559
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1215.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FNL0_ECTSI3.110e-10884.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAI9_9STRA5.190e-4949.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G5S6_ECTSI4.920e-4848.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1R9I1_HETAK1.090e-4545.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2EF12_TRICV3.260e-3745.45Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
F0YHZ6_AURAN1.860e-3646.11Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
H3HED5_PHYRM4.410e-2938.92Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]
A0A0P1ATT3_PLAHL3.700e-2738.83Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A8J2SVQ1_9STRA7.880e-2636.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662WNB9_9STRA2.600e-2435.65Aldo_ket_red domain-containing protein (Fragment) ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1215contigP-lacustris_contig1215:46165..49949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.8
Seed ortholog evalue1.4e-85
Seed eggNOG ortholog2880.D7FNL0
Hectar predicted targeting categoryother localisation
EggNOG OGs290NK@1,2S4NB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size708
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1215.1621.1prot_P-lacustris_contig1215.1621.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1215 46165..49949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.1637113-CDS-P-lacustris_contig1215:46164..462951622815535.1637113-CDS-P-lacustris_contig1215:46164..46295Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 46165..46295 +
1693493595.675121-CDS-P-lacustris_contig1215:46164..462951693493595.675121-CDS-P-lacustris_contig1215:46164..46295Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 46165..46295 +
1622815535.177925-CDS-P-lacustris_contig1215:47631..476921622815535.177925-CDS-P-lacustris_contig1215:47631..47692Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 47632..47692 +
1693493595.6865656-CDS-P-lacustris_contig1215:47631..476921693493595.6865656-CDS-P-lacustris_contig1215:47631..47692Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 47632..47692 +
1622815535.1898074-CDS-P-lacustris_contig1215:48032..481481622815535.1898074-CDS-P-lacustris_contig1215:48032..48148Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 48033..48148 +
1693493595.698352-CDS-P-lacustris_contig1215:48032..481481693493595.698352-CDS-P-lacustris_contig1215:48032..48148Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 48033..48148 +
1622815535.2000847-CDS-P-lacustris_contig1215:48358..484101622815535.2000847-CDS-P-lacustris_contig1215:48358..48410Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 48359..48410 +
1693493595.7123113-CDS-P-lacustris_contig1215:48358..484101693493595.7123113-CDS-P-lacustris_contig1215:48358..48410Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 48359..48410 +
1622815535.2174597-CDS-P-lacustris_contig1215:49072..492341622815535.2174597-CDS-P-lacustris_contig1215:49072..49234Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 49073..49234 +
1693493595.7249718-CDS-P-lacustris_contig1215:49072..492341693493595.7249718-CDS-P-lacustris_contig1215:49072..49234Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 49073..49234 +
1622815535.2308736-CDS-P-lacustris_contig1215:49763..499491622815535.2308736-CDS-P-lacustris_contig1215:49763..49949Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 49764..49949 +
1693493595.733752-CDS-P-lacustris_contig1215:49763..499491693493595.733752-CDS-P-lacustris_contig1215:49763..49949Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1215 49764..49949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1215.1621.1

>prot_P-lacustris_contig1215.1621.1 ID=prot_P-lacustris_contig1215.1621.1|Name=mRNA_P-lacustris_contig1215.1621.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=236bp
MYSTKRINKNIVEGNRFITVGDPYKELRKLPGRWKGKQFKTEGCPTNADN
GNFTKLTYSSEPFQEIEQFTRTQPSNKRNLGFGTKDAFKTGEFTGTTRTE
QYREMLLQEQRLMDSSRDVQVELEKMEQVKAKHASSRRFVKGKEEIKHLY
DVGRSLQNEFNPYRKHDAFYDFQTSEGKRMGPYREHGGLGSPPDCTRVWA
DTPYQELLRPQTSGGGRGGGLQGPTAAALTTLTEV*
back to top

mRNA from alignment at P-lacustris_contig1215:46165..49949+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1215.1621.1 ID=mRNA_P-lacustris_contig1215.1621.1|Name=mRNA_P-lacustris_contig1215.1621.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3785bp|location=Sequence derived from alignment at P-lacustris_contig1215:46165..49949+ (Pleurocladia lacustris SAG_25_93)
ATGTATAGCACCAAGCGCATCAACAAGAACATCGTCGAAGGGAACAGGTT
CATCACCGTCGGGGACCCTTACAAGGAGCTCCGGAAGTTGCCCGGCCGCT
GGAAGGGCAAGCAGTTCAAGACTGAGGGTTGGTGCGTGCGTGTTGTTTGT
CCCTGTCTCGTCGTCCCTCCACATCACGCGCGGGGAAATAGCCAAACTCA
CCGATTGATTGTTGATTTCGTCTTGTTGTGTGATTTGCGTGATCCACGCA
GACGAGACTTCAACTCCTACAAAATAGGCAAAACACACCCGCTTCGCCAA
CATGTTGTCAAAGAAGGGGATACTGAAAACACTGAAAGCAGAAACATCTC
AACAAAGTTTTCCTTTATAAATACTGGGGGGGCAACCTACGAAAGATAAA
AATCTGGCTTGCCGAACATGGTAATAGGAAAGGTGCTCCGTTTTCGGTGG
GATGTTTGCCGAATATCAAGCGGCCTAGTCAAGCAATTATACCGGGGCAC
CCCGCCATCTTTCCAGAGGCCTCTAACCCTGGCAATGTCCCAAAGCATTT
CAAGGGGAGAAACCAGGGGATATTCTGCCATCGACGCCCCATAAGGCTTC
TGGAGAAGCGCCCCCGGGCGCTTCTCCAGAAGCCTTTATTATCCTTACCA
GGAGGTTCTAGTGTGTCTATCGTGCCGAAGAGTAGAATGAATCACGTTGG
TGTACAGAATCGCACGACATCATTTTGGACATGGAACTGCCTAAAAAAAT
GAGTAGGTGCAGGTTTTGAGAAGCGCGGCGAAAGGAGAAGCATTCGTTCA
GAGCGTAGGGCATACAGCCGTAGCTGCCCACGTTCAACATTAACTGCCGG
CATTTTGAGTTTAAAAAACTATCCTCTTGGGCATGATTGTTGAATCCTAT
ATCTTCTCCTGGATGTCGCAGCCTTGGTGCTTGTTGTTGCTTAAAGTCGT
TAAACCGTTGACCCCTTGACCCCTATCCACTCACTAATCGCTTACTAACA
CTCCCCAATCTTTGCCCCGTGTTTGACGCCTCTGGTTTCAAGGCCATTTA
AGCGTTTTGCTATTTACTTCTCACTTTGGGGTGCCTCCAGAAAAACAAAA
CTGAGAAGAAGTCCATAGATCCAGCTGCAGATTCTCCCACTTGTTCAGAC
GGAATTCATCCTCAATGGGCATGTGGGGAAACATGATCTCAACTACGCTT
ACCGAAAAACCCATACACCACACCAGAATCTATTCGTGCTGAGTCGTTCT
CTTCGCTGTTTGTAAAACGAACGGAATAACTTTGCCAACAAGGAGAGGTT
GGGCCACACCACTGACAAGGCCATGTGGTCCGATCGTAAGGGAGGGAGAA
ATGAACGTGTTCAATCAATCAATCCGGTATCACAGCGCAAACTCCATTAT
ATTCACACCATGTCGTTGATCCTTGGCGACTTGTCTCCCCCTCCTTGCCC
TCCCCCTTCTGGAAAAGCCCTACGAACGCGGACAATGGCAACTTCACTAA
GCTCACGTACTCCTCAGAACCTTTCCAGGTGTGTAGCTGTCATGTAGTTT
GCGCGTAGGTCCAAATCCATAAGATTATCCTGCAGGATTGTGGTAGTAAC
ATGAGTTCGACTTAGCACACGGCACTTGCATCACCCGGCACCCCCTTTAG
AAAGCCGACTCCAATTTCGGTGTTTTGCATACACATCTCGTGTCCTTTCA
CACATTGCGTCTCCATTATCACAAAGAATTGCCCCATGTTGTCGTCGTTC
ATCATACACGTACCTATCTATGTACTCGCAAGATGTGTACAGTAACTTAC
AAACCTATTTGTTGCCGTTTTCTTCGTGGCCGTACTACTTGTGTGGGCGA
TTCCGTTTGTCGCAACAGGAAATAGAGCAGTTCACCAGGACGCAGCCGTC
GAACAAGCGAAACTTGGGTTTTGGCACCAAGGACGCTTTCAAGACCGGGG
AGTTTACGGGCACCACTCGAACGGAACAATACAGGTAGGTACAACGATAC
ACTTGGCGATGGTGTCAGGTAAATACTATATTTCTCACCACCTTGAGTCC
ATCTTGTGACGGAGCCAAAGCTAACGAAGCCCATAAAAAGCTTTAGCCTG
AAGACGTACCTGATTAACACAAATCGGTGCGTGCGCTTGACGGTTCCTCG
ACCCGGCCCGTTTCGATTCGGTGGGTTAACTTGACAACGAATAGGGAAAT
GCTGCTCCAGGAGCAACGGTTGATGGACTCGTCGCGGGATGTTCAGGTGC
GTGGGGCGTCAGACTAAGGACGGTGCAGCCTAAGAATGACGTGGCAGGAG
AACTCCAAAATCAGGGCTGGAACGAGAAAATTGTCTGTTGTTTTGCTGTT
TGATGGGTGTTCGAAATGATACCCCAATCCAAAAGACAGTTCGTACCCAT
TTCCGGAGCGTGTGGTGTGGCTGCGGAAAGTCCGTCTTGTCGACGGCTTT
CTCATGGAATTGGGCGCGCGCGCGCGATTCGTGGCAGACAAAGGGTAGGA
GGTACCATGAGACAGTTAAAAATCCGTGTGGAGACTACTTAGTGCGTTTG
AGTGCACAGTGAGCATGTACACGGCGAAAACCTGGACGTGCGTTCAATGC
GCGGAGACAAGATGATGTATTCCACGTTCGTTTGTCCCTTGTTTTATCCC
AGGAAACTTAAGGAGACAGTTAGTGTGTTTTAGGTTACTTTCCCGGAAGT
GGAGTACTCCCCGATATTTTGCTCATGGTCATCGTGCACAGTGTCCCATC
TGTTTGTCGCAGAAGGCATCCGGCCAAGTTACTTTGGACGTTCAGGGTTA
AAAAAGCATGAAGAGGACAGTTCAATTGCAAGAGATCCAGGCCTCCAAAC
CGATGCACCAAAACTCTTCTCTAGTACGGGAGGCATTGACACACCACACA
CCTGACAGGTCGAGCTAGAGAAGATGGAACAGGTCAAGGCCAAGCACGCC
TCTTCGAGAAGATTCGTGAAAGGGAAGGAGGAGATCAAGCACCTCTACGA
CGTCGGTCGCTCCCTCCAGAACGAGTTCAACCCTTACAGAAAACATGACG
CGTTTTACGACTTTCAGACGGTGAGCAAGCGCGGGGAAACAAGCAAACAA
ACACGAAATATGGCGGCTTAGCAGCGCCCGTGGTTGTTCTTAGCCTAGTA
ATCCCTCAAAGCACGAAACCCCTCACCGCAGATATCGTTTTTCAGAAAGA
AACACCAATGAGTTTCGTTTTGACGTCCAGCGTGGTACGGCACACCTATA
CAAATTTTCTAGAAAAGAACTCTAGCGCTTTTGTCTGAACATCCAGATGA
TGCGCAAGCACTTGACAGGCGAATATTTACGTGGTGTCATATGTCGCTAT
ATAATCTCCTGACGCATCTGTGCGCTAGGGAACGGGTGAGTAGGTCGGTT
AAAAATAAAAGACAACTTGTCATAAAAAATGTCCACGATTGATTCACGGC
AAACAACCAACAACGACAAGCAATAAGATGATACAAGACAATAATCAGCA
ATCGACGAAACGAAAATCAAAGAGATGCCTTTACCGCCCCTACTCCATAC
ACTCACGCCGCCGCTCTTTTCGTAAGTCCGACACAACACACAAATGCAGT
CGGAAGGAAAGCGGATGGGGCCGTATCGGGAACATggcGGCTTGGGATCA
CCGCCCGACTGCACCAGAGTTTGGGCCGATACACCATATCAAGAACTTCT
ACGACCGCAGACATCTGGAGGTGGCCGGGGAGGAGGCCTGCAAGGTCCAA
CCGCGGCAGCGCTTACTACGTTGACTGAAGTTTGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1215:46165..49949+

>mRNA_P-lacustris_contig1215.1621.1 ID=mRNA_P-lacustris_contig1215.1621.1|Name=mRNA_P-lacustris_contig1215.1621.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1416bp|location=Sequence derived from alignment at P-lacustris_contig1215:46165..49949+ (Pleurocladia lacustris SAG_25_93)
ATGTATAGCACCAAGCGCATCAACAAGAACATCGTCGAAGGGAACAGGTT
CATCACCGTCGGGGACCCTTACAAGGAGCTCCGGAAGTTGCCCGGCCGCT
GGAAGGGCAAGCAGTTCAAGACTGAGGGTTGATGTATAGCACCAAGCGCA
TCAACAAGAACATCGTCGAAGGGAACAGGTTCATCACCGTCGGGGACCCT
TACAAGGAGCTCCGGAAGTTGCCCGGCCGCTGGAAGGGCAAGCAGTTCAA
GACTGAGGGTTGCCCTACGAACGCGGACAATGGCAACTTCACTAAGCTCA
CGTACTCCTCAGAACCTTTCCAGCCCTACGAACGCGGACAATGGCAACTT
CACTAAGCTCACGTACTCCTCAGAACCTTTCCAGGAAATAGAGCAGTTCA
CCAGGACGCAGCCGTCGAACAAGCGAAACTTGGGTTTTGGCACCAAGGAC
GCTTTCAAGACCGGGGAGTTTACGGGCACCACTCGAACGGAACAATACAG
GAAATAGAGCAGTTCACCAGGACGCAGCCGTCGAACAAGCGAAACTTGGG
TTTTGGCACCAAGGACGCTTTCAAGACCGGGGAGTTTACGGGCACCACTC
GAACGGAACAATACAGGGAAATGCTGCTCCAGGAGCAACGGTTGATGGAC
TCGTCGCGGGATGTTCAGGGAAATGCTGCTCCAGGAGCAACGGTTGATGG
ACTCGTCGCGGGATGTTCAGGTCGAGCTAGAGAAGATGGAACAGGTCAAG
GCCAAGCACGCCTCTTCGAGAAGATTCGTGAAAGGGAAGGAGGAGATCAA
GCACCTCTACGACGTCGGTCGCTCCCTCCAGAACGAGTTCAACCCTTACA
GAAAACATGACGCGTTTTACGACTTTCAGACGGTCGAGCTAGAGAAGATG
GAACAGGTCAAGGCCAAGCACGCCTCTTCGAGAAGATTCGTGAAAGGGAA
GGAGGAGATCAAGCACCTCTACGACGTCGGTCGCTCCCTCCAGAACGAGT
TCAACCCTTACAGAAAACATGACGCGTTTTACGACTTTCAGACGTCGGAA
GGAAAGCGGATGGGGCCGTATCGGGAACATggcGGCTTGGGATCACCGCC
CGACTGCACCAGAGTTTGGGCCGATACACCATATCAAGAACTTCTACGAC
CGCAGACATCTGGAGGTGGCCGGGGAGGAGGCCTGCAAGGTCCAACCGCG
GCAGCGCTTACTACGTTGACTGAAGTTTGATCGGAAGGAAAGCGGATGGG
GCCGTATCGGGAACATggcGGCTTGGGATCACCGCCCGACTGCACCAGAG
TTTGGGCCGATACACCATATCAAGAACTTCTACGACCGCAGACATCTGGA
GGTGGCCGGGGAGGAGGCCTGCAAGGTCCAACCGCGGCAGCGCTTACTAC
GTTGACTGAAGTTTGA
back to top