mRNA_P-lacustris_contig1214.1615.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1214.1615.1
Unique NamemRNA_P-lacustris_contig1214.1615.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1214.1615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1214contigP-lacustris_contig1214:9010..9769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.365408-CDS-P-lacustris_contig1214:9009..92041622815534.365408-CDS-P-lacustris_contig1214:9009..9204Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1214 9010..9204 -
1693493595.108178-CDS-P-lacustris_contig1214:9009..92041693493595.108178-CDS-P-lacustris_contig1214:9009..9204Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1214 9010..9204 -
1622815534.3778815-CDS-P-lacustris_contig1214:9712..97691622815534.3778815-CDS-P-lacustris_contig1214:9712..9769Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1214 9713..9769 -
1693493595.1251042-CDS-P-lacustris_contig1214:9712..97691693493595.1251042-CDS-P-lacustris_contig1214:9712..9769Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1214 9713..9769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1214.1615.1prot_P-lacustris_contig1214.1615.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1214 9010..9769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1214.1615.1

>prot_P-lacustris_contig1214.1615.1 ID=prot_P-lacustris_contig1214.1615.1|Name=mRNA_P-lacustris_contig1214.1615.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=84bp
MARVHPRLEKERLLQHQNMVKQRLDEGLSGGEAFKFLLRLVATHFDYEDR
GDALTKLNGFFVPTGTQFGEFLRQFRTAVTNITH
back to top

mRNA from alignment at P-lacustris_contig1214:9010..9769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1214.1615.1 ID=mRNA_P-lacustris_contig1214.1615.1|Name=mRNA_P-lacustris_contig1214.1615.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=760bp|location=Sequence derived from alignment at P-lacustris_contig1214:9010..9769- (Pleurocladia lacustris SAG_25_93)
ATGGCGAGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCCAACATCA
GAACATGGTGAGACCATGTCCAGATTGATGAGCTCTCTTCGTTCCCCTCG
TCCCAAGCCTCGTAGGGTTCCCCCTTTGTCTTCCGTGGCAGACTCCAACC
GTGGTTGGATGTCGCGCAACAGTGTGTCGGTAGTACACAATGGTCTCCCC
TTTCGTCCCAGTTGGCTCGCACGCGTCAGGCAGAGTTGGAGGAGGCAGCG
AAGTTGGTCGAGATAGCTCGCGTTCGAGATATCGCCACCAACTACACGAA
AACCAAGTTGCGGGAGATTAAAATCCACCCCCGCATGCCTTGGCAGCCAA
GCCTTAAAAACGCGGTGCCACAGCTCCTAGACTCCATCTCTGCCGCGGTC
CTCGACATTTTGCAGCAAGCAGATCCGTTTATCGTGTTCGAGGACTCGGA
TAGTTGGTGTCGAGGATGGGAAAATCCTTTAAGGAAGGCGATGATTTCAG
CGGTTGTCACAGAGAAAGACACGACCGGAGAACTGATTTCCTCAATTAAC
GACATGTTCACGCAGGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGG
CGAGGCCTTCAAGTTCCTCCTGCGGCTGGTGGCGACACATTTCGACTACG
AGGATCGAGGCGATGCCTTGACAAAGTTGAATGGTTTTTTTGTGCCCACG
GGAACGCAATTCGGAGAATTTTTGCGGCAGTTCAGAACGGCGGTGACAAA
CATCACCCAC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1214:9010..9769-

>mRNA_P-lacustris_contig1214.1615.1 ID=mRNA_P-lacustris_contig1214.1615.1|Name=mRNA_P-lacustris_contig1214.1615.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=504bp|location=Sequence derived from alignment at P-lacustris_contig1214:9010..9769- (Pleurocladia lacustris SAG_25_93)
ATGGCGAGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCCAACATCA
GAACATGATGGCGAGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCC
AACATCAGAACATGGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGC
GAGGCCTTCAAGTTCCTCCTGCGGCTGGTGGCGACACATTTCGACTACGA
GGATCGAGGCGATGCCTTGACAAAGTTGAATGGTTTTTTTGTGCCCACGG
GAACGCAATTCGGAGAATTTTTGCGGCAGTTCAGAACGGCGGTGACAAAC
ATCACCCACGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGCGAGGC
CTTCAAGTTCCTCCTGCGGCTGGTGGCGACACATTTCGACTACGAGGATC
GAGGCGATGCCTTGACAAAGTTGAATGGTTTTTTTGTGCCCACGGGAACG
CAATTCGGAGAATTTTTGCGGCAGTTCAGAACGGCGGTGACAAACATCAC
CCAC
back to top