mRNA_P-lacustris_contig1213.1611.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1213.1611.1
Unique NamemRNA_P-lacustris_contig1213.1611.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1213.1611.1 vs. uniprot
Match: D7FTP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP9_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.090e-72
Identity = 125/183 (68.31%), Postives = 141/183 (77.05%), Query Frame = 1 
Query:    1 MEKTPVKNGYGVLTSTLSASLIGLFDASSEKRKATNRAWNHRYKADAAFQISQQQGTHPVRKVLHMQKCYPETVFRLNNKGHGTSSLDGRPINTRRHRNPSPNNNNTFTA-RQHHQQPSVS-QKDRCFDDGHKVPDNTTRLRVVHEYQFCRDKMAYNRTMGREAEVNGILTGTSPLEKRLPCF 543
            ME+  VKNGYG LTSTLSAS+IG FDASSE+RKATNRAWN +Y  DA FQ+ Q QG HPVRKVLHMQKCYPETVFRLN +G        RPI+ R HRNP+PNN NT  A +Q H++P  S Q DR  D GH++  NTTR R  +EY FCRDKMAYNRT GREAEV+GILTGTSPL+KRLP F
Sbjct:    1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEERKATNRAWNQKYDTDAVFQMRQLQGNHPVRKVLHMQKCYPETVFRLNRQGRTHEPDADRPISGRWHRNPAPNNYNTSVATQQRHRRPQSSLQADRSADGGHELSGNTTRRRGGYEYHFCRDKMAYNRTRGREAEVDGILTGTSPLDKRLPLF 183
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BLAST of mRNA_P-lacustris_contig1213.1611.1 vs. uniprot
Match: A0A7S2XVD6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVD6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.950e-14
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3 
Query:  534 PLFPARATHQQLLGLIRR--PSDPNKSAPAVPRVRKWLGDNVGWEGNRGLPTPPA-GRSAKDGEVHPWPSSQY 743
            P+FP  A+HQ  L + ++    DP KSAP   +  +WLGD VGWE NRGLPTPP  G   KDG + PWP+++Y
Sbjct:   25 PIFPQGASHQTQLTIDKKLVGDDPRKSAPPTKQPLRWLGDGVGWENNRGLPTPPGVGADGKDGAIKPWPTTKY 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1213.1611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTP9_ECTSI1.090e-7268.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XVD6_9STRA2.950e-1450.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1213contigP-lacustris_contig1213:37813..40802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009320.1
Exons4
Model size1425
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1213.1611.1prot_P-lacustris_contig1213.1611.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1213 37813..39254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.8940926-CDS-P-lacustris_contig1213:37812..379071622815533.8940926-CDS-P-lacustris_contig1213:37812..37907Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 37813..37907 +
1693493594.7168264-CDS-P-lacustris_contig1213:37812..379071693493594.7168264-CDS-P-lacustris_contig1213:37812..37907Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 37813..37907 +
1622815533.9040713-CDS-P-lacustris_contig1213:38615..389991622815533.9040713-CDS-P-lacustris_contig1213:38615..38999Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 38616..38999 +
1693493594.7277753-CDS-P-lacustris_contig1213:38615..389991693493594.7277753-CDS-P-lacustris_contig1213:38615..38999Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 38616..38999 +
1622815533.9137704-CDS-P-lacustris_contig1213:39154..392541622815533.9137704-CDS-P-lacustris_contig1213:39154..39254Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 39155..39254 +
1693493594.7354941-CDS-P-lacustris_contig1213:39154..392541693493594.7354941-CDS-P-lacustris_contig1213:39154..39254Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 39155..39254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.9294899-UTR-P-lacustris_contig1213:39254..393381622815533.9294899-UTR-P-lacustris_contig1213:39254..39338Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1213 39255..39338 +
1693493594.7459776-UTR-P-lacustris_contig1213:39254..393381693493594.7459776-UTR-P-lacustris_contig1213:39254..39338Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1213 39255..39338 +
1622815533.9391541-UTR-P-lacustris_contig1213:40040..408021622815533.9391541-UTR-P-lacustris_contig1213:40040..40802Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1213 40041..40802 +
1693493594.7591915-UTR-P-lacustris_contig1213:40040..408021693493594.7591915-UTR-P-lacustris_contig1213:40040..40802Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1213 40041..40802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1213.1611.1

>prot_P-lacustris_contig1213.1611.1 ID=prot_P-lacustris_contig1213.1611.1|Name=mRNA_P-lacustris_contig1213.1611.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=193bp
MEKTPVKNGYGVLTSTLSASLIGLFDASSEKRKATNRAWNHRYKADAAFQ
ISQQQGTHPVRKVLHMQKCYPETVFRLNNKGHGTSSLDGRPINTRRHRNP
SPNNNNTFTARQHHQQPSVSQKDRCFDDGHKVPDNTTRLRVVHEYQFCRD
KMAYNRTMGREAEVNGILTGTSPLEKRLPCFRQGQRTSSCWD*
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mRNA from alignment at P-lacustris_contig1213:37813..40802+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1213.1611.1 ID=mRNA_P-lacustris_contig1213.1611.1|Name=mRNA_P-lacustris_contig1213.1611.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2990bp|location=Sequence derived from alignment at P-lacustris_contig1213:37813..40802+ (Pleurocladia lacustris SAG_25_93)
ATGGAAAAAACACCGGTTAAAAATGGGTACGGGGTCCTGACGTCCACGCT
TAGCGCATCCTTAATCGGGCTTTTTGATGCCAGCTCGGAGAAAAGGTGAT
CAACATAGAGATAGTCACCTCCCTCGGCGGACTGATCATGATCTGACGCT
CATCACACACAAACGATCATCTTTTGGAAAAACATGAGCATTTAAGACAA
GCTACTGAGAGGGTCCCAAGGGGGCTTTGAAGAAGTCTTTGCAGTGACGA
TTGAAGTGAGGCCTGCCCGATATGGTGGCACGTGTCTCCCTTCATGCTTG
TATGTGCGTACAAAACTACACGGACAATTTCCCCGTTGGCATTCGATGAC
GTGAGCTTGCGAGTATTTGGGAGCATTGCCGGGCATATTCGGACGACAGA
TACTGCTGTATATAGACAAACGCCCGCATGACTAGAAATTTGGTCTGTCC
AAGGGCAAATGGTGGGAATTGTGTAAAACAAGATCGGGACGTTGCAAAAC
TACTCACCTATCCTGCTCCAGGTTTCGGTCCACCCTACCTGCCCGTCGAC
CGTTGGTCCTCATACTGCTGTATGGGGTAAAGGTAATTTTCATATTTGTA
TCGCCGGATAAGTGAGATGCCGAAACCCACCCATCGCCAAAAAAAAGCCG
CCACACCTCTTGCTTGAAGTTATATGCATGTGACTGCGGTGCATTGCCGA
AAAGTAACCTCCGTCAATGTTTAGTGTGTCTAAAACTCCGCCCCGGTGTA
ACCAACAATCGACAGAGCAAACACGTTGCCTCCTTCGACCAATAAAAACG
CAGAAAGGCAACCAACCGAGCTTGGAACCATCGATACAAAGCGGATGCCG
CCTTTCAGATATCACAGCAGCAAGGAACCCACCCGGTGCGCAAGGTTCTG
CACATGCAGAAGTGCTACCCCGAGACAGTTTTTCGCCTGAACAACAAGGG
TCACGGTACGTCCAGTCTCGACGGCCGCCCGATCAACACCAGACGGCATC
GAAACCCATCGCCAAACAACAACAATACATTCACGGCACGACAGCATCAC
CAACAGCCCTCGGTTTCCCAGAAAGATCGTTGCTTCGACGACGGGCATAA
AGTGCCCGACAACACGACGCGACTACGGGTGGTCCACGAGTACCAGTTCT
GCCGCGACAAGATGGCATACAACCGGACTATGGGGAGGTATGCCACTACA
CGAAGTTGCGGTTTTCAACGCAAATCCACCTCTAGACCTGGATACTCCCA
GGGCACCTCAGCTCGCGAGACTGTCGCTCGCGTTTCTACCCAGTGTGACG
AGGTGCGACGTAAACTGTTTCCTTCGCTCGAACGGTGACCAGGGAAGCAG
AAGTTAACGGAATCCTTACTGGAACGTCGCCCCTCGAGAAAAGGCTCCCC
TGTTTCCGGCAAGGGCAACGCACCAGCAGCTGCTGGGACTGATCCGTCGC
CCGAGCGACCCAAACAAGTCGGCACCCGCCGTGCCGAGGGTGAGGAAATG
GCTGGGGGACAACGTCGGGTGGGAAGGTGAGAGAAAGTACTGTACCTTTC
CGGACAACACACTATCCATTGTTTTTTTCCGGAGAAGGCGTTTTGAGTGC
GGCAGATACGTCGCAGGCGGATAATGGCATGAAGAGGGGAAAACACAGTG
TAGCGTCCACGAAGTCTGCGCAAGCAAACCCGTCGTGCCATTAGGGGTTC
AGGACCAAGCGTTCGGATGTAAGTACCACTGCACTCAAAACCCACATGCA
CCGGACAAAGCGGCCCAGAAAAATCGAACATTTTCGAGCCAAGAGTTTCC
AACCGACAGAAAGAAAGGAGGCCTATGAGGTCCAGAAACGTAGTTACAGA
CAACGCCTCGGTAGCTTTCCTAACCCATCGATAACAAGGACTCCGATCTG
TTCCGCAAAGACCAATGGCCTACCTCGGGACAACATCGGCACGTGCCCAT
GCCGGCCTCTCACAAGGCACATTCGTGCTTTTTTCAGGCCTAACAATGTA
GTCTACATACAAGCAGGGCAAGCACCAGGCTCTTGCACTGGGGAAGGGCA
AACGAAGCACCCCACATACCACTGGGGCATGGCACTGTTCGACACGCAGA
CTGCCAATAGATTCACTCGATAGAGAATATAGGCCCTTGGCCATTGATGC
GTGTTTTCCACGTTCCAGACACCTCTTCTTCGCGTTGAAGCTCTCATGGT
CGGTCGCCATCTGCAAAAACCGTGGCAGGAAATCGAGGGCTGCCCACTCC
GCCAGCCGGCCGCAGCGCGAAAGATGGAGAGGTTCATCCGTGGCCGTCCT
CGCAGTACCCTTCGTTTCCACTTGACTAACCAGTGAGCGTTACGATTACT
CAGCCCCCAGCGGGCTTTTCCTGGTTTGGTCACGTTGGTGGTAGCCCAGG
AATAGGTTTTATTCTAGGTCAAGAGCGTTCAAGGCTAATTGCGTATATTT
GTGTGCGATAACAGCCCGGGGGAGGGCCCCGGACTCAACTGAAGCCCCAT
TCTTTTTGCAGTAGTAAAGGCTAGATAGAGTTGAGAAGAGATGGGAAGAG
GAAGAAAAACGATGGGGACAAAAGTAAAAAAGAAATGAAATTGGGACTCA
TATAAATACGAAATGAAAGAAAATGAAAGAAAATGAAAGAAAATGAAACG
TAGTTGGTTATGCTCTGCACTTCCCGACGTAGATGCAATTAATTCTCCTT
GCACTCCTCGAACTTGACTTCGTCGGCTCAGGAACACCGTTGAATACATT
CGCTTGACTTCGTGGTCCGTGGGCAGATGGGGCAGATTGGTGCAATCGGA
AAGGTATTGACTGTGCAGAGAATAAAAGGCCTCCATGTGCTCTGTCTCAG
CTCTGCGTAGAATGTACGGGGAAACAAAGCAGGGTATGAGAGGCGCGTTG
ACGGCAGGAGCAAAAATAAATGTAACGTCTGCCAAGCAGAGAGATGCATG
CCATTTGACAGCGCGTACCAACAGACAACGAAACCACCGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1213:37813..40802+

>mRNA_P-lacustris_contig1213.1611.1 ID=mRNA_P-lacustris_contig1213.1611.1|Name=mRNA_P-lacustris_contig1213.1611.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1158bp|location=Sequence derived from alignment at P-lacustris_contig1213:37813..40802+ (Pleurocladia lacustris SAG_25_93)
ATGGAAAAAACACCGGTTAAAAATGGGTACGGGGTCCTGACGTCCACGCT
TAGCGCATCCTTAATCGGGCTTTTTGATGCCAGCTCGGAGAAAAGATGGA
AAAAACACCGGTTAAAAATGGGTACGGGGTCCTGACGTCCACGCTTAGCG
CATCCTTAATCGGGCTTTTTGATGCCAGCTCGGAGAAAAGAAAGGCAACC
AACCGAGCTTGGAACCATCGATACAAAGCGGATGCCGCCTTTCAGATATC
ACAGCAGCAAGGAACCCACCCGGTGCGCAAGGTTCTGCACATGCAGAAGT
GCTACCCCGAGACAGTTTTTCGCCTGAACAACAAGGGTCACGGTACGTCC
AGTCTCGACGGCCGCCCGATCAACACCAGACGGCATCGAAACCCATCGCC
AAACAACAACAATACATTCACGGCACGACAGCATCACCAACAGCCCTCGG
TTTCCCAGAAAGATCGTTGCTTCGACGACGGGCATAAAGTGCCCGACAAC
ACGACGCGACTACGGGTGGTCCACGAGTACCAGTTCTGCCGCGACAAGAT
GGCATACAACCGGACTATGGGGAGAAAGGCAACCAACCGAGCTTGGAACC
ATCGATACAAAGCGGATGCCGCCTTTCAGATATCACAGCAGCAAGGAACC
CACCCGGTGCGCAAGGTTCTGCACATGCAGAAGTGCTACCCCGAGACAGT
TTTTCGCCTGAACAACAAGGGTCACGGTACGTCCAGTCTCGACGGCCGCC
CGATCAACACCAGACGGCATCGAAACCCATCGCCAAACAACAACAATACA
TTCACGGCACGACAGCATCACCAACAGCCCTCGGTTTCCCAGAAAGATCG
TTGCTTCGACGACGGGCATAAAGTGCCCGACAACACGACGCGACTACGGG
TGGTCCACGAGTACCAGTTCTGCCGCGACAAGATGGCATACAACCGGACT
ATGGGGAGGGAAGCAGAAGTTAACGGAATCCTTACTGGAACGTCGCCCCT
CGAGAAAAGGCTCCCCTGTTTCCGGCAAGGGCAACGCACCAGCAGCTGCT
GGGACTGAGGAAGCAGAAGTTAACGGAATCCTTACTGGAACGTCGCCCCT
CGAGAAAAGGCTCCCCTGTTTCCGGCAAGGGCAACGCACCAGCAGCTGCT
GGGACTGA
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