mRNA_P-lacustris_contig1213.1609.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1213.1609.1
Unique NamemRNA_P-lacustris_contig1213.1609.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1213.1609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1213contigP-lacustris_contig1213:25476..26621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.5167673-CDS-P-lacustris_contig1213:25475..256241622815533.5167673-CDS-P-lacustris_contig1213:25475..25624Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 25476..25624 +
1693493594.4311163-CDS-P-lacustris_contig1213:25475..256241693493594.4311163-CDS-P-lacustris_contig1213:25475..25624Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 25476..25624 +
1622815533.5272212-CDS-P-lacustris_contig1213:26502..266201622815533.5272212-CDS-P-lacustris_contig1213:26502..26620Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 26503..26620 +
1693493594.448205-CDS-P-lacustris_contig1213:26502..266201693493594.448205-CDS-P-lacustris_contig1213:26502..26620Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1213 26503..26620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1213.1609.1prot_P-lacustris_contig1213.1609.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1213 25476..26620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1213.1609.1

>prot_P-lacustris_contig1213.1609.1 ID=prot_P-lacustris_contig1213.1609.1|Name=mRNA_P-lacustris_contig1213.1609.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=89bp
KGGRYGQVARGRRVRSRTRRGRVDPERFEMIQQNQRNISTPFRERRLTRS
LPRQRTPLAFLHPFQLHVAGVRLLLSLDVSVSTPETRSQ
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mRNA from alignment at P-lacustris_contig1213:25476..26621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1213.1609.1 ID=mRNA_P-lacustris_contig1213.1609.1|Name=mRNA_P-lacustris_contig1213.1609.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1146bp|location=Sequence derived from alignment at P-lacustris_contig1213:25476..26621+ (Pleurocladia lacustris SAG_25_93)
AAGGGGGGACGCTATGGCCAAGTTGCGCGGGGACGACGTGTCCGGTCTCG
AACAAGACGCGGTCGTGTGGATCCAGAACGCTTCGAAATGATACAGCAAA
ATCAGCGAAACATATCGACGCCCTTCCGAGAACGACGATTGACAAGAAGG
TGAGAAGTGGGCCTCGCACGCACCTGTCGAAACACTTTCTTCAGATATCC
ATGACCCCGGTACATTGGATGCTCCGGACGGATCCGGGGGACCATTGTCA
CAAACATTCTAACCAAGACGGGAAACGCTGCCACCAAAGATGATCCCACA
TGAAGCTCTTTCCTCGAGTCTTCGTGTGTCGTTGCCGCTATCTTCGTTCG
GGATTTGGTTTACCGTTGTCGTAGAAAAGGGTCGTCTCTCTCAGTCTAGG
CTGCGCGGGGGTGATCCAGAGAGGTTGAGACGGGTTCTCTAGCACGAGGC
GGAACAAATCTTTCGTCCAGTCGCCAACCTGGTCTCTCCGGAAGCAGACA
AGGCAACCAACAACAGCGACGCCGGCCGCAATGAGAAAATAGTTACGGGG
AGGAACCAGAGAAGGCGGCAGGGAGGGAGGGACGAGCGAAGGGCGTTTGG
CATAATATTTATTTGTCTAGTGCTTGGACCGTGTACCTCGGGTGAGATAG
AGCAGCACCGTTGCCTTTCCCACCACTTCTCGTTAGCTTTCCTGGTGTTG
AGTTCGCCTGTTGCCGTCGTTATCTCCCGTCTCCTTCCTCGGCATAGAAC
AGCAATAGGCAAGCACGCAGCCCTCTTCCGCCCACAGCAGTTCATCACTA
ACTACGTCATGACTCAGTACCTATCTTTTTGCTGCACGCCTCGTCCTCTG
AGTCTGCGTCGGCCTCTTCCTCTCTCCCCGATAATTTTTTTTTTTCTCTC
CAAGTTTATGAATTCCGCTCGCAAATCCCTCCCCCCTCGCCCCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTGCGCACGGGCACGGGCACGACAGCCTTCCACGGCAACGAACGCCGT
TGGCCtTTTTGCACCCGTTCCAGCTACATGTAGCGGGGGTGCGTCTACTG
CTGTCCTTGGACGTAAGCGTCAGCACCCCTGAAACAAGGAGTCAGC
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Coding sequence (CDS) from alignment at P-lacustris_contig1213:25476..26621+

>mRNA_P-lacustris_contig1213.1609.1 ID=mRNA_P-lacustris_contig1213.1609.1|Name=mRNA_P-lacustris_contig1213.1609.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=534bp|location=Sequence derived from alignment at P-lacustris_contig1213:25476..26621+ (Pleurocladia lacustris SAG_25_93)
AAGGGGGGACGCTATGGCCAAGTTGCGCGGGGACGACGTGTCCGGTCTCG
AACAAGACGCGGTCGTGTGGATCCAGAACGCTTCGAAATGATACAGCAAA
ATCAGCGAAACATATCGACGCCCTTCCGAGAACGACGATTGACAAGAAGA
AGGGGGGACGCTATGGCCAAGTTGCGCGGGGACGACGTGTCCGGTCTCGA
ACAAGACGCGGTCGTGTGGATCCAGAACGCTTCGAAATGATACAGCAAAA
TCAGCGAAACATATCGACGCCCTTCCGAGAACGACGATTGACAAGAAGCC
TTCCACGGCAACGAACGCCGTTGGCCtTTTTGCACCCGTTCCAGCTACAT
GTAGCGGGGGTGCGTCTACTGCTGTCCTTGGACGTAAGCGTCAGCACCCC
TGAAACAAGGAGTCAGCCTTCCACGGCAACGAACGCCGTTGGCCtTTTTG
CACCCGTTCCAGCTACATGTAGCGGGGGTGCGTCTACTGCTGTCCTTGGA
CGTAAGCGTCAGCACCCCTGAAACAAGGAGTCAG
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