mRNA_P-lacustris_contig1212.1607.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1212.1607.1
Unique NamemRNA_P-lacustris_contig1212.1607.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1212.1607.1 vs. uniprot
Match: A0A6H5KJM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM5_9PHAE)

HSP 1 Score: 520 bits (1339), Expect = 1.050e-178
Identity = 266/379 (70.18%), Postives = 309/379 (81.53%), Query Frame = 1 
Query:    1 QRHFRADFLKRQAGRGMMHAAAFLSVGLFLEVAATFWTLAQAIATGVFDKADCGVRALALYHNEHLPQNCDQLDSSVIWFDENRTVSTFTSCSGGLDDPPIDQFCDCSKYEEASSSCVWTPATSTRVEIEGLCLAVPVISLTAEMKEDYGTAFDWLLDSSEFEYQDECTPLSPDGFGAITIALLVVSLVIELVEAFVGYKRWRDPLSGDGLVAVGSVAEGAGILLIWCLLRFLEDGIRESDVSENHYEFLNVLMSIVLVVVCVGTLAEIVFYFSSTAHDRLPCLSIFGNGLIWLGSGLTEVVVTAYLVWRLQWLRLEENQREEADEEKWPVLAAAVIGLVVLEVVALLAVWIARLLVARAKSTLLKAKDASLQELMGGV 1137
            +R+ RA  LK+QA RGM HAAAFLS+GLFLE+ ATFWTLAQAIA+GVFD+ADCGVRAL+LYHN+ LP NC+QLDSSV+WFDE+RTVSTFTSCSG L+DPPIDQ CDC++Y+  S+ C WT A+STR EIEGLC+AVPVI+LT++++E+YGT +DWLLDSSE EYQD+C PLSP+GFG ITIALLVVSL +ELVEA+VGYKRWR+PLS  GLV V SV EG G+  IWCLLRFL  GI E++VSEN Y+FLN+++  VLVV   GTLAEIVFYFS  A  R   L + GN L WL S LTEVVVTAYLVWRLQW    EN  E ADEE WPVL AAVIGLVVLEV ALL +WIAR+L+ARA S LL AKD SL E   G+
Sbjct:   25 KRNHRAACLKKQAIRGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNDRLPSNCEQLDSSVVWFDEDRTVSTFTSCSG-LEDPPIDQLCDCARYDRVSTGCTWTSASSTRDEIEGLCVAVPVIALTSDLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWRNPLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFGGTLAEIVFYFS--APGRFRYLGVLGNSLTWLASALTEVVVTAYLVWRLQWW---ENADETADEETWPVLVAAVIGLVVLEVAALLVLWIARVLIARATSALLTAKDLSLGEPCRGM 397
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1212.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJM5_9PHAE1.050e-17870.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1212contigP-lacustris_contig1212:61711..63490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_000650.1
Exons1
Model size1780
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1212.1607.1prot_P-lacustris_contig1212.1607.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1212 61759..62892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.457412-UTR-P-lacustris_contig1212:61710..617581622815533.457412-UTR-P-lacustris_contig1212:61710..61758Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1212 61711..61758 +
1693493594.392527-UTR-P-lacustris_contig1212:61710..617581693493594.392527-UTR-P-lacustris_contig1212:61710..61758Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1212 61711..61758 +
1622815533.4807231-UTR-P-lacustris_contig1212:62892..634901622815533.4807231-UTR-P-lacustris_contig1212:62892..63490Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1212 62893..63490 +
1693493594.4166448-UTR-P-lacustris_contig1212:62892..634901693493594.4166448-UTR-P-lacustris_contig1212:62892..63490Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1212 62893..63490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.4677079-CDS-P-lacustris_contig1212:61758..628921622815533.4677079-CDS-P-lacustris_contig1212:61758..62892Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1212 61759..62892 +
1693493594.4059393-CDS-P-lacustris_contig1212:61758..628921693493594.4059393-CDS-P-lacustris_contig1212:61758..62892Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1212 61759..62892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1212.1607.1

>prot_P-lacustris_contig1212.1607.1 ID=prot_P-lacustris_contig1212.1607.1|Name=mRNA_P-lacustris_contig1212.1607.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=378bp
MMHAAAFLSVGLFLEVAATFWTLAQAIATGVFDKADCGVRALALYHNEHL
PQNCDQLDSSVIWFDENRTVSTFTSCSGGLDDPPIDQFCDCSKYEEASSS
CVWTPATSTRVEIEGLCLAVPVISLTAEMKEDYGTAFDWLLDSSEFEYQD
ECTPLSPDGFGAITIALLVVSLVIELVEAFVGYKRWRDPLSGDGLVAVGS
VAEGAGILLIWCLLRFLEDGIRESDVSENHYEFLNVLMSIVLVVVCVGTL
AEIVFYFSSTAHDRLPCLSIFGNGLIWLGSGLTEVVVTAYLVWRLQWLRL
EENQREEADEEKWPVLAAAVIGLVVLEVVALLAVWIARLLVARAKSTLLK
AKDASLQELMGGVTSSSDESKETKPHP*
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mRNA from alignment at P-lacustris_contig1212:61711..63490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1212.1607.1 ID=mRNA_P-lacustris_contig1212.1607.1|Name=mRNA_P-lacustris_contig1212.1607.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1780bp|location=Sequence derived from alignment at P-lacustris_contig1212:61711..63490+ (Pleurocladia lacustris SAG_25_93)
CAGCGCCATTTCCGCGCTGATTTTCTCAAGAGGCAAGCCGGACGCGGAAT
GATGCATGCAGCAGCATTCTTGTCTGTGGGGCTGTTCTTGGAGGTAGCCG
CGACATTTTGGACCTTGGCGCAAGCGATAGCAACCGGGGTGTTCGACAAG
GCAGACTGTGGGGTACGCGCCCTTGCTTTGTATCACAATGAGCACTTGCC
GCAGAATTGCGATCAGTTGGATAGCTCGGTGATTTGGTTTGATGAAAATC
GAACTGTCAGCACGTTCACCAGCTGTAGCGGTGGCCTAGACGATCCCCCG
ATCGATCAGTTCTGCGATTGCTCCAAGTACGAAGAGGCTAGCTCTAGTTG
CGTCTGGACTCCGGCGACTTCAACCCGTGTCGAAATTGAAGGCTTATGCC
TTGCGGTTCCAGTGATATCTTTGACAGCAGAAATGAAGGAGGACTACGGG
ACGGCTTTCGACTGGCTTCTTGACAGTTCGGAGTTCGAATACCAAGACGA
GTGTACGCCGCTGAGCCCCGACGGTTTCGGAGCTATCACGATAGCCTTGC
TCGTTGTTTCGCTCGTTATCGAGCTCGTGGAGGCGTTCGTAGGCTACAAG
CGCTGGCGAGACCCCCTGTCGGGAGACGGTCTGGTTGCTGTTGGATCAGT
CGCAGAGGGCGCAGGGATACTCTTGATCTGGTGTTTACTGCGGTTCTTGG
AGGACGGGATTCGCGAGTCCGACGTGAGCGAAAATCATTACGAGTTTTTA
AATGTGTTGATGTCTATTGTCTTGGTCGTGGTGTGCGTAGGCACGCTTGC
CGAGATTGTGTTCTACTTCTCTAGCACCGCGCACGATCGGCTCCCGTGCC
TCAGCATTTTCGGGAATGGGCTGATTTGGCTTGGTTCGGGGCTCACAGAA
GTGGTGGTAACAGCGTACCTTGTTTGGAGACTTCAGTGGTTGAGGTTGGA
GGAGAATCAACGCGAGGAGGCCGACGAAGAGAAATGGCCTGTCCTGGCAG
CTGCTGTGATCGGTCTCGTAGTCCTTGAAGTAGTGGCCCTGTTGGCGGTG
TGGATCGCTCGCCTTCTTGTCGCGAGAGCCAAATCGACGCTTTTGAAAGC
CAAAGACGCGAGCTTGCAAGAGCTAATGGGTGGGGTGACTAGCAGCAGTG
ATGAGAGCAAAGAAACTAAGCCCCATCCGTAAGGATCTTGATTGTCCCTC
TGACCTCGAACAGACCGGGCGGGGGCAAAACCATTTGTTTGGTATTCAGC
GATAGATCATGGCGATGTACATGAAACCGTAGGCGCCCTGTATTTGTTGA
TCTCATCGCGGTTGTTTGAACGTTTTTCAGGTGTAGTTTCTAACCTTGTT
GACAGCTGCAGGTTGGTGCGTGGGTGTGTAGATTAGAAGACATTAATTAG
AGTGCCGTAGAGAGCGCGAGACGCGGTTTTGAACGCTCGGTGGACCTACC
TGTCTGGCCGACTTGTGTGTCTTCGTTCGGGTTGTCTTGCCCAAATGTGC
TTGATACTGCTCTCAGGTGTTATCAAGGGTGGTGCCGGTTGAATCCAACA
ACAACTCGTTTTCCAAGTATTTTCCCAAGCAAGCCTGATCAAATACCTCA
AGACCGCAAAAGGATTATACAGCCTGTTACCCTTGTGGACTTGCGTTTAA
AGTCTGAGCGGACATACGTGTGTAAAGTCCGAGCGGATAGACGGCACGGA
AAAATGTTCGCATGGCAAGTGCTGGCTGGGATACCGTAGACATCACATCC
CAATGAGGCCAGGACGGAGCATGATCGGTG
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Coding sequence (CDS) from alignment at P-lacustris_contig1212:61711..63490+

>mRNA_P-lacustris_contig1212.1607.1 ID=mRNA_P-lacustris_contig1212.1607.1|Name=mRNA_P-lacustris_contig1212.1607.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2268bp|location=Sequence derived from alignment at P-lacustris_contig1212:61711..63490+ (Pleurocladia lacustris SAG_25_93)
ATGATGCATGCAGCAGCATTCTTGTCTGTGGGGCTGTTCTTGGAGGTAGC
CGCGACATTTTGGACCTTGGCGCAAGCGATAGCAACCGGGGTGTTCGACA
AGGCAGACTGTGGGGTACGCGCCCTTGCTTTGTATCACAATGAGCACTTG
CCGCAGAATTGCGATCAGTTGGATAGCTCGGTGATTTGGTTTGATGAAAA
TCGAACTGTCAGCACGTTCACCAGCTGTAGCGGTGGCCTAGACGATCCCC
CGATCGATCAGTTCTGCGATTGCTCCAAGTACGAAGAGGCTAGCTCTAGT
TGCGTCTGGACTCCGGCGACTTCAACCCGTGTCGAAATTGAAGGCTTATG
CCTTGCGGTTCCAGTGATATCTTTGACAGCAGAAATGAAGGAGGACTACG
GGACGGCTTTCGACTGGCTTCTTGACAGTTCGGAGTTCGAATACCAAGAC
GAGTGTACGCCGCTGAGCCCCGACGGTTTCGGAGCTATCACGATAGCCTT
GCTCGTTGTTTCGCTCGTTATCGAGCTCGTGGAGGCGTTCGTAGGCTACA
AGCGCTGGCGAGACCCCCTGTCGGGAGACGGTCTGGTTGCTGTTGGATCA
GTCGCAGAGGGCGCAGGGATACTCTTGATCTGGTGTTTACTGCGGTTCTT
GGAGGACGGGATTCGCGAGTCCGACGTGAGCGAAAATCATTACGAGTTTT
TAAATGTGTTGATGTCTATTGTCTTGGTCGTGGTGTGCGTAGGCACGCTT
GCCGAGATTGTGTTCTACTTCTCTAGCACCGCGCACGATCGGCTCCCGTG
CCTCAGCATTTTCGGGAATGGGCTGATTTGGCTTGGTTCGGGGCTCACAG
AAGTGGTGGTAACAGCGTACCTTGTTTGGAGACTTCAGTGGTTGAGGTTG
GAGGAGAATCAACGCGAGGAGGCCGACGAAGAGAAATGGCCTGTCCTGGC
AGCTGCTGTGATCGGTCTCGTAGTCCTTGAAGTAGTGGCCCTGTTGGCGG
TGTGGATCGCTCGCCTTCTTGTCGCGAGAGCCAAATCGACGCTTTTGAAA
GCCAAAGACGCGAGCTTGCAAGAGCTAATGGGTGGGGTGACTAGCAGCAG
TGATGAGAGCAAAGAAACTAAGCCCCATCCGTAAATGATGCATGCAGCAG
CATTCTTGTCTGTGGGGCTGTTCTTGGAGGTAGCCGCGACATTTTGGACC
TTGGCGCAAGCGATAGCAACCGGGGTGTTCGACAAGGCAGACTGTGGGGT
ACGCGCCCTTGCTTTGTATCACAATGAGCACTTGCCGCAGAATTGCGATC
AGTTGGATAGCTCGGTGATTTGGTTTGATGAAAATCGAACTGTCAGCACG
TTCACCAGCTGTAGCGGTGGCCTAGACGATCCCCCGATCGATCAGTTCTG
CGATTGCTCCAAGTACGAAGAGGCTAGCTCTAGTTGCGTCTGGACTCCGG
CGACTTCAACCCGTGTCGAAATTGAAGGCTTATGCCTTGCGGTTCCAGTG
ATATCTTTGACAGCAGAAATGAAGGAGGACTACGGGACGGCTTTCGACTG
GCTTCTTGACAGTTCGGAGTTCGAATACCAAGACGAGTGTACGCCGCTGA
GCCCCGACGGTTTCGGAGCTATCACGATAGCCTTGCTCGTTGTTTCGCTC
GTTATCGAGCTCGTGGAGGCGTTCGTAGGCTACAAGCGCTGGCGAGACCC
CCTGTCGGGAGACGGTCTGGTTGCTGTTGGATCAGTCGCAGAGGGCGCAG
GGATACTCTTGATCTGGTGTTTACTGCGGTTCTTGGAGGACGGGATTCGC
GAGTCCGACGTGAGCGAAAATCATTACGAGTTTTTAAATGTGTTGATGTC
TATTGTCTTGGTCGTGGTGTGCGTAGGCACGCTTGCCGAGATTGTGTTCT
ACTTCTCTAGCACCGCGCACGATCGGCTCCCGTGCCTCAGCATTTTCGGG
AATGGGCTGATTTGGCTTGGTTCGGGGCTCACAGAAGTGGTGGTAACAGC
GTACCTTGTTTGGAGACTTCAGTGGTTGAGGTTGGAGGAGAATCAACGCG
AGGAGGCCGACGAAGAGAAATGGCCTGTCCTGGCAGCTGCTGTGATCGGT
CTCGTAGTCCTTGAAGTAGTGGCCCTGTTGGCGGTGTGGATCGCTCGCCT
TCTTGTCGCGAGAGCCAAATCGACGCTTTTGAAAGCCAAAGACGCGAGCT
TGCAAGAGCTAATGGGTGGGGTGACTAGCAGCAGTGATGAGAGCAAAGAA
ACTAAGCCCCATCCGTAA
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