mRNA_P-lacustris_contig121.1581.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig121.1581.1
Unique NamemRNA_P-lacustris_contig121.1581.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig121.1581.1 vs. uniprot
Match: A0A6H5KZK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.240e-7
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  127 MDAWGVRQQGG-DERVRLKRCKSAFANLKALSTLSTNAAASRRCCEGWRRWPRVVVFRWR 303
            MDAWGVRQQGG DE VRLKRCKSAFANLKALST +  A       +   R    +V R R
Sbjct:    1 MDAWGVRQQGGGDEHVRLKRCKSAFANLKALSTSAGAAGGGEDTSDRGLRVEHAIVPRLR 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig121.1581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZK6_9PHAE6.240e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig121contigP-lacustris_contig121:205266..206851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001940.1
Exons2
Model size1130
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig121.1581.1prot_P-lacustris_contig121.1581.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig121 205474..206067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.5630252-UTR-P-lacustris_contig121:205265..2054731622815528.5630252-UTR-P-lacustris_contig121:205265..205473Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 205266..205473 -
1693493591.09941-UTR-P-lacustris_contig121:205265..2054731693493591.09941-UTR-P-lacustris_contig121:205265..205473Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 205266..205473 -
1622815528.5840905-UTR-P-lacustris_contig121:206067..2062981622815528.5840905-UTR-P-lacustris_contig121:206067..206298Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 206068..206298 -
1693493591.132037-UTR-P-lacustris_contig121:206067..2062981693493591.132037-UTR-P-lacustris_contig121:206067..206298Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 206068..206298 -
1622815528.5985248-UTR-P-lacustris_contig121:206754..2068511622815528.5985248-UTR-P-lacustris_contig121:206754..206851Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 206755..206851 -
1693493591.1401463-UTR-P-lacustris_contig121:206754..2068511693493591.1401463-UTR-P-lacustris_contig121:206754..206851Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 206755..206851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.5736756-CDS-P-lacustris_contig121:205473..2060671622815528.5736756-CDS-P-lacustris_contig121:205473..206067Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 205474..206067 -
1693493591.1225767-CDS-P-lacustris_contig121:205473..2060671693493591.1225767-CDS-P-lacustris_contig121:205473..206067Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 205474..206067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig121.1581.1

>prot_P-lacustris_contig121.1581.1 ID=prot_P-lacustris_contig121.1581.1|Name=mRNA_P-lacustris_contig121.1581.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=198bp
MESIAPRWRQFFGQQDTAAASSFPPSSLEARVENRLRGGVTGGPLLFGST
RWPVESGTTSAGHHHHLGPLQQGVVSAAVATTTTERRLFGGSGGGGKRLR
DEVARVGSTRSSGRIGCGFSSRRHSFASSSFDKFSTVHEQHQAPLPTRRL
LLVVVAAAGAGSSVPSCGASSNCNQEMLGITETPRSDVRRTRTPPPP*
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mRNA from alignment at P-lacustris_contig121:205266..206851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig121.1581.1 ID=mRNA_P-lacustris_contig121.1581.1|Name=mRNA_P-lacustris_contig121.1581.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1586bp|location=Sequence derived from alignment at P-lacustris_contig121:205266..206851- (Pleurocladia lacustris SAG_25_93)
CACATACGCGTACGTTGGTTGTGCCATACAGACCACGGCAGCAACGCTTC
CGCAAGCAACAGAGGAGGCAAGCACGGTCGACATTGTGTCTTTCCAGGTG
TGTGCGAGCTGTGCCCGCTCTATTGCGTTGGGTGTTTGTTGCTGTGGAAA
GACCAGGACGACGACAAAATTCTTGGTCAACCTCTGTTGTTGTTGAACGT
GTGTTTGTTTGTGTCTCATTTCTCTCGCACAGACAGAACGCGTCCCTGTT
GTAGCTCAGCCATTAACCACCCCGTCAACCCCATGTGCATGAATGGCCTC
GAGCGTGGAAGTACTGTCTCTACGCTCCAACCTCTCCAGCCATTCTCTCT
TGTCCCCCTGCTGCTGGTGTCTGCTGGGCGGTTGATTTTTTTCAAAACTC
TTCGAAAAATCGTCACACTCAAACCTGTGGTCACACGAGAAGCTCTCTCA
CCTCCCATCACTCCGCTCTCGGCTCAATTGGACGATCTTTGCCCCCGCAC
GCAGCGACTAATCCACCTTCCTCCCCGCCCGCTCCCCATCTCCGTGGCCG
CAGTTTCAAATATGAAGAGGGCGGTGTCATCCATGGACGCTTGGGGTGTC
CGGCAACAAGGCGGGGACGAACGCGTGCGATTGAAAAGGTGCAAGAGCGC
CTTCGCCAACTTGAAAGCGCTCTCAACACTATCAACAAACGCCGCCGCTA
GCCGCCGCTGCTGTGAGGGGTGGCGGCGCTGGCCCCGAGTCGTCGTTTTT
CGCTGGCGAGGAAGCACCCACAAGTATCCTCGGCATGGAATCGATAGCCC
CGCGATGGCGGCAGTTTTTCGGTCAACAAGACACGGCGGCGGCATCATCA
TTTCCGCCATCCTCGCTCGAGGCGAGAGTTGAAAATCGGCTCAGAGGTGG
TGTGACGGGTGGGCCGCTTTTGTTTGGTTCAACAAGGTGGCCGGTGGAAA
GCGGAACGACATCAGCAGGCCACCACCACCATCTCGGTCCCTTGCAGCAA
GGCGTGGTGTCCGCGGCGGTAGCGACAACGACCACGGAGAGGCGATTGTT
TGGGGGAAGCGGCGGTGGCGGCAAGCGCCTGCGGGACGAAGTGGCCCGTG
TTGGTTCAACGAGGAGCAGCGGTAGGATCGGCTGCGGTTTCTCCTCGCGC
CGACATAGCTTTGCATCGTCGTCTTTCGACAAGTTCAGCACTGTGCACGA
GCAGCACCAAGCCCCGTTACCGACACGCCGTCTTCTCCTCGTGGTGGTGG
CGGCGGCGGGGGCAGGCAGCAGTGTCCCTTCGTGCGGCGCCAGCAGCAAC
TGCAACCAGGAGATGTTGGGGATAACGGAGACACCCCGATCCGACGTTCG
TCGGACGAGGACGCCCCCACCACCGTAGGCATCGAATTCAGTGGTTGGAT
GGCCGAGCCGGCGGGCGCGAGCTCGCCGGAGTTCAGCATAGTGGGTTTCG
AAGATGTTGACGTCGAGGGTGAGGTTGGCACCTCGGAGGAGGAAGACAAT
CAGTGGTGCGCTTCTCCCAGCGATCTTCATTTCGACGGTGTTGCGGATGG
CGCATCTCCTTCTTCACAACAACAGCAGCAGCGAGA
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Coding sequence (CDS) from alignment at P-lacustris_contig121:205266..206851-

>mRNA_P-lacustris_contig121.1581.1 ID=mRNA_P-lacustris_contig121.1581.1|Name=mRNA_P-lacustris_contig121.1581.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1188bp|location=Sequence derived from alignment at P-lacustris_contig121:205266..206851- (Pleurocladia lacustris SAG_25_93)
ATGGAATCGATAGCCCCGCGATGGCGGCAGTTTTTCGGTCAACAAGACAC
GGCGGCGGCATCATCATTTCCGCCATCCTCGCTCGAGGCGAGAGTTGAAA
ATCGGCTCAGAGGTGGTGTGACGGGTGGGCCGCTTTTGTTTGGTTCAACA
AGGTGGCCGGTGGAAAGCGGAACGACATCAGCAGGCCACCACCACCATCT
CGGTCCCTTGCAGCAAGGCGTGGTGTCCGCGGCGGTAGCGACAACGACCA
CGGAGAGGCGATTGTTTGGGGGAAGCGGCGGTGGCGGCAAGCGCCTGCGG
GACGAAGTGGCCCGTGTTGGTTCAACGAGGAGCAGCGGTAGGATCGGCTG
CGGTTTCTCCTCGCGCCGACATAGCTTTGCATCGTCGTCTTTCGACAAGT
TCAGCACTGTGCACGAGCAGCACCAAGCCCCGTTACCGACACGCCGTCTT
CTCCTCGTGGTGGTGGCGGCGGCGGGGGCAGGCAGCAGTGTCCCTTCGTG
CGGCGCCAGCAGCAACTGCAACCAGGAGATGTTGGGGATAACGGAGACAC
CCCGATCCGACGTTCGTCGGACGAGGACGCCCCCACCACCGTAGATGGAA
TCGATAGCCCCGCGATGGCGGCAGTTTTTCGGTCAACAAGACACGGCGGC
GGCATCATCATTTCCGCCATCCTCGCTCGAGGCGAGAGTTGAAAATCGGC
TCAGAGGTGGTGTGACGGGTGGGCCGCTTTTGTTTGGTTCAACAAGGTGG
CCGGTGGAAAGCGGAACGACATCAGCAGGCCACCACCACCATCTCGGTCC
CTTGCAGCAAGGCGTGGTGTCCGCGGCGGTAGCGACAACGACCACGGAGA
GGCGATTGTTTGGGGGAAGCGGCGGTGGCGGCAAGCGCCTGCGGGACGAA
GTGGCCCGTGTTGGTTCAACGAGGAGCAGCGGTAGGATCGGCTGCGGTTT
CTCCTCGCGCCGACATAGCTTTGCATCGTCGTCTTTCGACAAGTTCAGCA
CTGTGCACGAGCAGCACCAAGCCCCGTTACCGACACGCCGTCTTCTCCTC
GTGGTGGTGGCGGCGGCGGGGGCAGGCAGCAGTGTCCCTTCGTGCGGCGC
CAGCAGCAACTGCAACCAGGAGATGTTGGGGATAACGGAGACACCCCGAT
CCGACGTTCGTCGGACGAGGACGCCCCCACCACCGTAG
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