mRNA_P-lacustris_contig121.1580.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig121.1580.1
Unique NamemRNA_P-lacustris_contig121.1580.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig121.1580.1 vs. uniprot
Match: D7G2A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2A1_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 7.170e-88
Identity = 187/284 (65.85%), Postives = 202/284 (71.13%), Query Frame = 2 
Query:  125 MGDDLLELAKAKELASVMGGAWHAEEWDVDSDSEQTRCKAQPSPRPGDTGGSSGSNGKTVEAGGFLSRTLYRRKGSPS-SNGSVHSS------INGSSGSGKANGSAIGRGSIGERRSSGAVRRPADGRAPGRRDPAAVARLEAEAAARRNAEKEGLGG-VDPSWQLPTNVDYYTAPAALLRELVKEMPADKRLSFQTRVANARSKEAIESLLEDFAARLESLVLPHARSRQLDLQQVKKDTARERVVLNGKEMAFWGSASDKPHTWHEELWATLEARVTEGLL 952
            MGDD LELAKAKELASVMGGAWH+EEWDVDS                      G   KT   GGFLSRTLYR K S + +NGS HSS      I   SG+G  N    G G +G RRSSG VRRPADGRAPGRRDP AVARLEAEAAAR  AEKE LGG VD SWQLP+NVDYY+APAALLRELVKEMPADKRLSFQTRVANAR+KE+IES+LED+A RLESLVLPHARSR++DLQQVKK          GK     G+    P TWHEELWATLEARV E +L
Sbjct:    1 MGDDRLELAKAKELASVMGGAWHSEEWDVDSXXXXXXXXXXXXXXXXXXSSKDGD--KTNNKGGFLSRTLYRPKPSAAGANGSAHSSGSKPPNIPPKSGAG-GNAKNGGWGGVGGRRSSGGVRRPADGRAPGRRDPTAVARLEAEAAARAKAEKEELGGRVDLSWQLPSNVDYYSAPAALLRELVKEMPADKRLSFQTRVANARTKESIESVLEDYAERLESLVLPHARSREMDLQQVKK---------TGKRSFSGGALPTSPTTWHEELWATLEARVMESVL 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig121.1580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2A1_ECTSI7.170e-8865.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig121contigP-lacustris_contig121:194524..199037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001920.1
Exons4
Model size2271
Cds size1002
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig121.1580.1prot_P-lacustris_contig121.1580.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig121 194648..197892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.9268088-UTR-P-lacustris_contig121:194523..1946471622815530.9268088-UTR-P-lacustris_contig121:194523..194647Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 194524..194647 +
1693493592.8177695-UTR-P-lacustris_contig121:194523..1946471693493592.8177695-UTR-P-lacustris_contig121:194523..194647Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 194524..194647 +
1622815530.978266-UTR-P-lacustris_contig121:197892..1990371622815530.978266-UTR-P-lacustris_contig121:197892..199037Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 197893..199037 +
1693493592.8709145-UTR-P-lacustris_contig121:197892..1990371693493592.8709145-UTR-P-lacustris_contig121:197892..199037Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 197893..199037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.938132-CDS-P-lacustris_contig121:194647..1947641622815530.938132-CDS-P-lacustris_contig121:194647..194764Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 194648..194764 +
1693493592.8272195-CDS-P-lacustris_contig121:194647..1947641693493592.8272195-CDS-P-lacustris_contig121:194647..194764Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 194648..194764 +
1622815530.9478607-CDS-P-lacustris_contig121:195772..1961631622815530.9478607-CDS-P-lacustris_contig121:195772..196163Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 195773..196163 +
1693493592.836019-CDS-P-lacustris_contig121:195772..1961631693493592.836019-CDS-P-lacustris_contig121:195772..196163Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 195773..196163 +
1622815530.9590678-CDS-P-lacustris_contig121:196614..1968021622815530.9590678-CDS-P-lacustris_contig121:196614..196802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 196615..196802 +
1693493592.8520238-CDS-P-lacustris_contig121:196614..1968021693493592.8520238-CDS-P-lacustris_contig121:196614..196802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 196615..196802 +
1622815530.968946-CDS-P-lacustris_contig121:197586..1978921622815530.968946-CDS-P-lacustris_contig121:197586..197892Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 197587..197892 +
1693493592.8630278-CDS-P-lacustris_contig121:197586..1978921693493592.8630278-CDS-P-lacustris_contig121:197586..197892Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 197587..197892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig121.1580.1

>prot_P-lacustris_contig121.1580.1 ID=prot_P-lacustris_contig121.1580.1|Name=mRNA_P-lacustris_contig121.1580.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=334bp
MGDDLLELAKAKELASVMGGAWHAEEWDVDSDSEQTRCKAQPSPRPGDTG
GSSGSNGKTVEAGGFLSRTLYRRKGSPSSNGSVHSSINGSSGSGKANGSA
IGRGSIGERRSSGAVRRPADGRAPGRRDPAAVARLEAEAAARRNAEKEGL
GGVDPSWQLPTNVDYYTAPAALLRELVKEMPADKRLSFQTRVANARSKEA
IESLLEDFAARLESLVLPHARSRQLDLQQVKKDTARERVVLNGKEMAFWG
SASDKPHTWHEELWATLEARVTEGLLGAAGSPAGANSSDSAAAPSNGHKA
AEARGGQCKSARLRGMEQGSGRGHDHRDFQGHV*
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mRNA from alignment at P-lacustris_contig121:194524..199037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig121.1580.1 ID=mRNA_P-lacustris_contig121.1580.1|Name=mRNA_P-lacustris_contig121.1580.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4514bp|location=Sequence derived from alignment at P-lacustris_contig121:194524..199037+ (Pleurocladia lacustris SAG_25_93)
CACCGAGGAAAAATCCATGGAATAACCCAAACACAAAACGGTTCGCCTCG
ACCGTCTTCGTGCTTGACATTTAGCGGCACAACAAGGTACCGCCGCCTTC
TCCGCGAGAACCATCGTCACCACCATGGGCGACGATCTCCTCGAGCTCGC
AAAGGCTAAGGAACTCGCGAGCGTGATGGGTGGTGCTTGGCATGCAGAGG
AATGGGATGTGGACTCAGACTCAGAACAAACAAGATGCAAGGTAAGAATA
CCTACCTACCTGGGAACATGTTGGAAGTGGCCAGAGAGTATTCTCGTCCT
TCTTCTGCTACACTAAGCACACCACACACTTACACCTCCTTTTCTCTGCT
TTCAAGGTCGGGTATCAACCTGTGTGTATGCGATTTGCCCTTGAGCGAGG
GGCATAGGAGCGAGGACGGCGTCAAAGCCCTGACAGGCGTGTGTACGCTC
TCATCACTTCCCGCTGGGCGGTGGAGCCAGAGTCTATTGACTAGGCACTT
TGTCCGTCTATGTGGCGAGGTCCCTTGCCGACAATGGTTGCGCTGGCCTA
AGATAGGAGCACACGAGAGTTGGCTGCGATACTCTCCGGTCTCCGGTCGA
ACGCGGGGTAATAGTTTTGTCACTCGTGCTCACTTTAACTGCTTCCATCT
GGTCTGCGTCTCCGCTCTGCTCGAAATTCACGGACGCTACTACTGCTGTT
ACTGCTGTTACTGCTGTACTGCTGTACTGCTGGAGTACGTAATCCAGACG
TTGGGAAACGCTGTGTAAGCTGGCGATGGTAAATACGATATCGAACGTTC
ACTTTTGGAGTCCATGGTATTTTTTTTTACACAGCAGCAGCGTTTGCAAA
ACTTGGCCCGACTCTTTTACACAGCAGCAGCGTTTGCAAAACTGCTGTAC
CGTGTTCTGGATGCTTGCTGAGGCTAGTACTTCAGGCCTTCCGTACCTCT
TTTCCTCTTTGTTTCGAACGACGTGGGTTTCCCATGTACGACACATGCAG
ATCTTACACACCAAACTAACCATTTGCCTCAGCAGATGAAACGCACGCTC
GGGGGTGTGTGAAAAAATGGGGCGAGATTGTGGATGCACCCTTCGAGGCG
GCAGCTTTTCCGTTTTCCGTTGTACATGTACACCGCACATGCGTCTTCTC
CGCCTCGCCCGCCACATCCTCTCCTGTTCGCCACCTGTCCGTCATCGCAT
CTCCCGCCGCAACGCCTAACACCCACACATGCACTGCTGTCGGACGCAGG
CGCAGCCATCGCCCCGCCCAGGTGACACCGGCGGCAGCAGCGGCAGCAAC
GGTAAGACGGTGGAGGCGGGGGGGTTCCTGAGCCGAACCCTGTACCGTCG
AAAAGGCAGTCCGAGCAGCAACGGGAGTGTCCACAGCAGCATCAACGGCA
GCAGCGGAAGCGGCAAAGCCAACGGATCTGCGATAGGGCGGGGCAGCATT
GGCGAACGCCGCTCGAGCGGGGCGGTGCGGCGACCGGCGGACGGGCGGGC
GCCGGGGAGGAGAGACCCGGCAGCGGTCGCGCGACTGGAGGCGGAGGCGG
CGGCGAGGAGAAACGCGGAGAAGGAGGGGCTTGGAGGGGTCGACCCGTCG
TGGCAGCTCCCGACGAACGTGGACTACTACACCGCACCAGGTACGTGGAG
GAAGGAGTTTTTTCTGGGGTGTCGTTGCCGCGGCGGGGGCGAGTCGTGTC
GCCTCTGGGGTAGGTGGTGGCGCTACGTGCGATTATTTTTGGAAGGTGTT
CGTTGTTTGTGTTTTTCAGAGCGCGCACGAGTCCCGTTGTGTGGGCTGCG
CTTCTCCTACGAACTGCCGTGGGGTTTGGTGCTTTCGTCTTTTTCGGGTT
CTGTCCTCTCTTCTTTAGCAACATGTTTCATTTGATGCGCCACTGTCCTT
CGCTTGTGATCTATATGGTGCGGGAGTTGTGGCGATTATTCCTGTGGCCT
ATGGTCTTGTGGTCCAACATAGCGACCCCCTTCCCCCCTCCCCGCCTAAA
CAAAATGTCATTTAAATGGTTTGAACAACACGGCCAACTATTGCGCTCGC
CGCCCTTAGAATCGCAACCCATCGCCCGTAACCGATACCAGCGGCGCTTT
TGCGGGAGCTTGTGAAGGAGATGCCGGCTGACAAGCGCCTGTCGTTCCAG
ACACGCGTCGCCAACGCACGCTCCAAGGAGGCCATCGAGAGCCTCCTGGA
GGACTTCGCGGCAAGGCTGGAGAGCTTGGTACTGCCGCACGCGCGCTCGC
GGCAGCTCGACCTGCAGCAGGTCAAGAAGGTGGGGTTAGATCTCGTGGGG
TTGGGCTTTGTGTTTTGCGCGTGTGCCGTCAATGCACCAGTACTGTACAC
GTGCGAGAATGCACACGGAAAACAGGGTGAACGAGTAAAGGGTGTAGTCA
CCCCACCCCCGGCGATGAGTTGAATATCCTTCGCAAAGCAGACCAAGGGA
CAACGGGGGTGGCTCCCGCGAGTTTTTTTTTTTCGCCCATTCATTCTGGA
CGCTATTCCAGCGTTTCTTCACACCTTTCCGTCGCGATGTAGGGTGGCGC
ACCAGCCGGGGTCACGTAGAAGGGTTCCTCTCCTGAGCCCCCACCCACCG
TCCTGCGGTACTTGCCTTAATTTTTATCGCGAGAAGAGTTCAGAAGGTGG
TCGAGGTGCTGTATTTGGCGCAAGGGTGACGAGCGGTCGGCCCCGCAGCA
CCGCACAGGTGGCCGGCTCGTTCGGGTTGGGTTGGACAATCGAGATCTCA
TCTCGTGGAGAGTTTGGAGTGGTACCCGTTGAGAAGGTTGCAGACGCCCG
AGCTCATCAAGTAGAGGTGTTATTTTCTGCGCACTAGTAAGGAAGCTGTT
GGTGCCACGCGATTTTTCTTGCGTTTTCATGTCTTTGCGGAGGTTGGGGC
TGACTCTCCGTAAGGTGGAGCTTTGCGTGAGGGGTGACGCAGACGGCATT
ACCCTCCCCTCACCATCTTCCATCTTGCTCACCCCCGCCCGGCGCAAATT
TGTGGCATGACCGGGAAATGCCTGCTTCGCACGCTCACTTACTGTTCACA
ACCGAACACGCAGGATACGGCACGCGAGCGAGTCGTTCTAAACGGTAAGG
AGATGGCATTCTGGGGTAGCGCTTCCGATAAGCCCCACACATGGCACGAG
GAGCTTTGGGCCACTCTGGAGGCTCGGGTGACGGAGGGTTTACTGGGCGC
TGCAGGTTCTCCCGCCGGCGCTAACAGTAGCGATTCGGCGGCAGCACCAT
CAAACGGGCACAAAGCGGCGGAGGCAAGGGGTGGACAATGCAAGAGCGCT
CGCCTGCGAGGAATGGAACAAGGCTCGGGCCGTGGCCACGACCACCGAGA
TTTTCAAGGCCATGTCTAGGACGGGGGCCGGGGGAGACGCCTACTTCGCG
CTGGTGGCGCTGTTCTGCACGGCGGACAAGCTGGTCGTTCCCGTGCACTG
CCAGGAGTCTCCCATCACGGTGGAGTTCTTGAACCGATCGTCGAATGCGG
GAGGCAAGGCGCATCGGCATTCCACGGCGCGGTCGGGGAAAAAGGGGTCA
GCCGGGGTGGGGGAAGGATGATGTCCACGTGCTCGTGACCGTCCCGAGCA
CGTTTGATATCTACTTGCGCGACGGTGCCGCAGCGAGCGAGGGCGCCAAC
GGCAGAAGCCGTGGCAGTATCGGCAATAGCAGCGCCCACAAACGAGGGAG
CGCCAACGGCGGCGGCGGCGGCGGCGGCGGTAAGATTCGCAAGGGGAGCT
CCATCAACAACCACTCCGACGGCGACGGCGCTGCGGCAACTGATGCTTCG
AGCGCGCTGCACCTTGTCAGGGTCAAGGCCGTCGTTGAGGAGGAAATCTG
GGTCGTGGGCTCAACAAAGGTGCCGGCGGCCACTTCGTCCAACAGGGGTA
GCGGCGGCGGCAGCAGGTTGTCCTCCAGCCCACCGGAAGACAACACCCCG
CCTACCCTGCGGTTTCTCCTGGATCCCAAGCGGGATGGACGGAGAACGTC
GGTGGGTTCCGTGATGACGAACGGTCCACGAGCATACAGGGGCTCCCCCT
CGAGCTCGAGAGGACGGCCCGAAGGTGAGGCGGCGGGGCGCCGGCGGGCG
ATAGAAGCGGGGGCGGGCCGAGAAGAGGGAGAGTTGTCCTTGAGCCCGCC
ACCCCGACCCCGGCCCCGGCCCCGTTCTTGGCGCTGACTCGCACCGAGCG
GCGAATGTGCGTGACCGTGGTGCCGGAGCCGAGCGCGGTGTCGGAGATGG
TGCGCAGCTTCTCGCGCAGGATGGGCGTCGACGTGGCCGGGCCCCAGCCA
CCCCGGGTGTTGGGCAGATGACGATTCCCCACTACATCAGGTTCTCTTTT
CCGCTCACTGCTGGAGGGGGCTTGGGGCGGCAGCCGGGGGGCAGTCCGGG
GCAGAGCGACAGAGTTCCTCTTGACCCCGAGGGAATGTTGTGCCGTCCCA
TTTTCGAGGGCGGGCGGGAGAAGCCAAACCGAGGGAGGCGTCGACAGGCG
AATTGGAAGACGGA
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Coding sequence (CDS) from alignment at P-lacustris_contig121:194524..199037+

>mRNA_P-lacustris_contig121.1580.1 ID=mRNA_P-lacustris_contig121.1580.1|Name=mRNA_P-lacustris_contig121.1580.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2004bp|location=Sequence derived from alignment at P-lacustris_contig121:194524..199037+ (Pleurocladia lacustris SAG_25_93)
ATGGGCGACGATCTCCTCGAGCTCGCAAAGGCTAAGGAACTCGCGAGCGT
GATGGGTGGTGCTTGGCATGCAGAGGAATGGGATGTGGACTCAGACTCAG
AACAAACAAGATGCAAGATGGGCGACGATCTCCTCGAGCTCGCAAAGGCT
AAGGAACTCGCGAGCGTGATGGGTGGTGCTTGGCATGCAGAGGAATGGGA
TGTGGACTCAGACTCAGAACAAACAAGATGCAAGGCGCAGCCATCGCCCC
GCCCAGGTGACACCGGCGGCAGCAGCGGCAGCAACGGTAAGACGGTGGAG
GCGGGGGGGTTCCTGAGCCGAACCCTGTACCGTCGAAAAGGCAGTCCGAG
CAGCAACGGGAGTGTCCACAGCAGCATCAACGGCAGCAGCGGAAGCGGCA
AAGCCAACGGATCTGCGATAGGGCGGGGCAGCATTGGCGAACGCCGCTCG
AGCGGGGCGGTGCGGCGACCGGCGGACGGGCGGGCGCCGGGGAGGAGAGA
CCCGGCAGCGGTCGCGCGACTGGAGGCGGAGGCGGCGGCGAGGAGAAACG
CGGAGAAGGAGGGGCTTGGAGGGGTCGACCCGTCGTGGCAGCTCCCGACG
AACGTGGACTACTACACCGCACCAGGCGCAGCCATCGCCCCGCCCAGGTG
ACACCGGCGGCAGCAGCGGCAGCAACGGTAAGACGGTGGAGGCGGGGGGG
TTCCTGAGCCGAACCCTGTACCGTCGAAAAGGCAGTCCGAGCAGCAACGG
GAGTGTCCACAGCAGCATCAACGGCAGCAGCGGAAGCGGCAAAGCCAACG
GATCTGCGATAGGGCGGGGCAGCATTGGCGAACGCCGCTCGAGCGGGGCG
GTGCGGCGACCGGCGGACGGGCGGGCGCCGGGGAGGAGAGACCCGGCAGC
GGTCGCGCGACTGGAGGCGGAGGCGGCGGCGAGGAGAAACGCGGAGAAGG
AGGGGCTTGGAGGGGTCGACCCGTCGTGGCAGCTCCCGACGAACGTGGAC
TACTACACCGCACCAGCGGCGCTTTTGCGGGAGCTTGTGAAGGAGATGCC
GGCTGACAAGCGCCTGTCGTTCCAGACACGCGTCGCCAACGCACGCTCCA
AGGAGGCCATCGAGAGCCTCCTGGAGGACTTCGCGGCAAGGCTGGAGAGC
TTGGTACTGCCGCACGCGCGCTCGCGGCAGCTCGACCTGCAGCAGGTCAA
GAAGCGGCGCTTTTGCGGGAGCTTGTGAAGGAGATGCCGGCTGACAAGCG
CCTGTCGTTCCAGACACGCGTCGCCAACGCACGCTCCAAGGAGGCCATCG
AGAGCCTCCTGGAGGACTTCGCGGCAAGGCTGGAGAGCTTGGTACTGCCG
CACGCGCGCTCGCGGCAGCTCGACCTGCAGCAGGTCAAGAAGGATACGGC
ACGCGAGCGAGTCGTTCTAAACGGTAAGGAGATGGCATTCTGGGGTAGCG
CTTCCGATAAGCCCCACACATGGCACGAGGAGCTTTGGGCCACTCTGGAG
GCTCGGGTGACGGAGGGTTTACTGGGCGCTGCAGGTTCTCCCGCCGGCGC
TAACAGTAGCGATTCGGCGGCAGCACCATCAAACGGGCACAAAGCGGCGG
AGGCAAGGGGTGGACAATGCAAGAGCGCTCGCCTGCGAGGAATGGAACAA
GGCTCGGGCCGTGGCCACGACCACCGAGATTTTCAAGGCCATGTCTAGGA
TACGGCACGCGAGCGAGTCGTTCTAAACGGTAAGGAGATGGCATTCTGGG
GTAGCGCTTCCGATAAGCCCCACACATGGCACGAGGAGCTTTGGGCCACT
CTGGAGGCTCGGGTGACGGAGGGTTTACTGGGCGCTGCAGGTTCTCCCGC
CGGCGCTAACAGTAGCGATTCGGCGGCAGCACCATCAAACGGGCACAAAG
CGGCGGAGGCAAGGGGTGGACAATGCAAGAGCGCTCGCCTGCGAGGAATG
GAACAAGGCTCGGGCCGTGGCCACGACCACCGAGATTTTCAAGGCCATGT
CTAG
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