mRNA_P-lacustris_contig121.1577.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig121.1577.1
Unique NamemRNA_P-lacustris_contig121.1577.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: D7G289_ECTSI (zf-LYAR domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G289_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 3.260e-117
Identity = 241/369 (65.31%), Postives = 260/369 (70.46%), Query Frame = 2 
Query:  104 VLADKMVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPKAKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVDGVKNDISAQEKKGAAAGATXXXXXXXXXXXXXXXTAEESREEAAPKIELETEPADKSLRKGKKSXXXXXXXXXXXXXXXXXXXXXXGSGTGKRPR---------------GQQAGGAQPEEGGRAGDGGVDAALCKALGKAAVGIVKKAPNKRMAVKELVKQAAAAVITAMGXXXXXXXXXXXXXEHQPDGQQLRRALKQRLLKEGLRRLAVEGKVAVYSK 1165
            +LAD+MVYFVCESCNETLKKAQV+RHLYSCK+CWGVTCVDCNFTFEGD+FR HTSCVSE+QKYQGALFKAPKAKQKNRGVNEIWAD+VLLAA NAS+GVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFD+ SVSKLW YVDGVKND++A+EK+  A  A                 AEE                          XXXXXXXXXXXXXXXXXXXXXX      RPR               G++A      EG R G GGVDAA  KAL KAA+G VKKA  KR+AVKELVKQAAAAV+ A G             EHQPD Q LRRALKQRL   GLR + VEGKVAVYSK
Sbjct:   56 LLADEMVYFVCESCNETLKKAQVDRHLYSCKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKAKQKNRGVNEIWADSVLLAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDGVKNDLTAKEKEATATPAAAAVAQVTA-------VAEEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XRPRXXXXXXXXXXXXXXXGEEA------EGARNG-GGVDAATRKALAKAAIGAVKKAQGKRIAVKELVKQAAAAVLVARGTEGSSSGSSK---EHQPDDQTLRRALKQRLKTGGLRHVTVEGKVAVYSK 404
[Close]
BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A835Z9A3_9STRA (zf-LYAR domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A3_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.050e-42
Identity = 76/161 (47.20%), Postives = 113/161 (70.19%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSC--KNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPKAKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVDGVKNDISAQEKKGAAA 595
            MV+F CE CNE+LKKAQVE+H+++C  +NCW VTC+DCN TF+GD +  HT+C+SE +KY+  ++K  K K   +   + W D V  AA +A+T   P  + AHL RM D GNVPRQEKKF+NF++NSL+++D  ++  +W +++ ++   +AQ + G AA
Sbjct:    1 MVFFNCEGCNESLKKAQVEKHVFTCPARNCWAVTCIDCNVTFKGDDYATHTTCISEAEKYEKTVYKGNKGKPVKKNPQDAWMDLVTEAAASAAT---PPAVRAHLQRMADFGNVPRQEKKFRNFLQNSLKLWDAGAIDAIWRHLEALR---AAQRQAGDAA 155
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BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A7S4DDA0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA0_HETAK)

HSP 1 Score: 155 bits (392), Expect = 1.780e-39
Identity = 73/154 (47.40%), Postives = 105/154 (68.18%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPKAKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVDGVKNDISAQEK 580
            MV+FVC+ CNETLK+ QV+ H   C +C+ VTCVDCN +F  + +++H +C+SE +KYQG L++APK K   +   E W + V+    N++   AP  L ++L RM DLGNVPRQ KKF NFVKNSL +  DA V++LW ++DG++     +E+
Sbjct:    1 MVFFVCDGCNETLKRNQVDTHAGRCHSCYAVTCVDCNVSFPDNDYKQHMTCISEAEKYQGNLYQAPKKKAGKQNPQEAWMELVV----NSANQPAPAGLKSYLQRMADLGNVPRQRKKFGNFVKNSLALRSDAVVAQLWDHLDGLREAAKQREQ 150
[Close]
BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A7S2SQW7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQW7_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.650e-39
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPK-----AKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYV 544
            MV+FVCE CNE+LKK QV++H   C  CW VTCVDCN TFEGD +R+HTSC+SE QKY+GAL++ PK       +K +G  EIW + V  AA  A +  AP  + + +  +   GNVPR + KF NFVKNSLRV  +  + ++W ++
Sbjct:    1 MVFFVCEGCNESLKKNQVDKHASFCSACWAVTCVDCNVTFEGDDYRQHTSCISEAQKYEGALYRGPKKGGETGSKKKKGPQEIWMEVVEQAA--AESQQAPANIRSMISNLSGFGNVPRNQNKFCNFVKNSLRVRSEPMIKQIWEFL 145
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BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A7R9UG70_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG70_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.510e-38
Identity = 72/158 (45.57%), Postives = 107/158 (67.72%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPKAKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVDGVKNDISAQEKKGAA 592
            MV+FVCE CNE+LKKAQV+RH   C+ CW VTCVDC  TF  D +R HTSC+SE +KY+ +    PK K+  +G +E+W + V  A++N +   AP  +   L ++  LGNVPR E+KF+NF+ NSLR+ D+  V+++W Y+  +K+   A++++  A
Sbjct:   18 MVFFVCEGCNESLKKAQVDRHAARCRACWAVTCVDCGKTFPDDEYRSHTSCISEAEKYEKSTRAVPKTKK--QGPHEVWMEVVETASKNVAD--APPRIQGWLPKIQSLGNVPRVERKFRNFLGNSLRLRDETIVTEIWQYLSELKSRQKAEKQEATA 171
[Close]
BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: W7TWJ6_9STRA (Zinc finger, C2H2, LYAR-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWJ6_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.750e-33
Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYS--CKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPKA-----KQKNRGVNEIWADAVL-LAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVDG 550
            MV+F CE CNETLKKAQVE HL    C   + V+CVDC+  F G +++ HTSC+SE +KY+ +L+K PKA     K K R   E W + +  +A  N+ TG     L  HL RM +LGNVPR EKKFKNF+ NSLR+       +LW Y+ G
Sbjct:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKG 151
[Close]
BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A7S3HA97_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HA97_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.840e-33
Identity = 65/143 (45.45%), Postives = 91/143 (63.64%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPKAKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVD 547
            MV+FVCE CNET+KK QV++H   C++C  VTCVDC+ TF G+ + EH +CVSE +KY+  L+KA   K     +N  +A    +    +    AP  +  +L R+G+L NVPR +KKF NF KNSLR++ D  +  LW Y+D
Sbjct:    1 MVFFVCEGCNETVKKNQVDKHASRCRSCHAVTCVDCSVTFYGNDYAEHITCVSEAEKYEKTLYKAKAVK-----LNPQYAWNAQIETATSKAETAPAIVRPYLQRLGELNNVPRNKKKFINFAKNSLRLYSDNVLEALWNYLD 138
[Close]
BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A8K1FM11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM11_PYTOL)

HSP 1 Score: 133 bits (334), Expect = 9.290e-32
Identity = 68/139 (48.92%), Postives = 90/139 (64.75%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPKAKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLW 535
            MV+FVCE CNETLKK +V+ H   C+NCW V+CVDC+  FEG+ +  HTSC+SE QKY+G+L+KA   K K     E W D V    +NA+ G   K L + L R+    NVPR++ KF NF+KNS+   D A + K+W
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCRNCWAVSCVDCSVVFEGNDYAAHTSCISEAQKYEGSLYKA---KSKKMSPQERWMDVV----QNATAG-NDKKLQSVLSRVAGYDNVPRKKAKFVNFMKNSIGGGDMAIIEKVW 131
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BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A6A4Z0P0_9STRA (zf-LYAR domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z0P0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 9.510e-32
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPK-AKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSL 499
            MV+FVCE CNETLKK +V+ H   CKNCW VTCVDC   F+G+ +  HT+C+SE QKY+GAL++ PK +KQ  +   E W D V      +ST   PK   A L R+    NVPR++ KF NFVKNS+
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCKNCWAVTCVDCQVVFKGNDYATHTTCISEAQKYEGALYQGPKLSKQAKKNPQEKWMDLV-----QSSTAPDPKVNQA-LQRIAGYDNVPRKKPKFLNFVKNSI 122
[Close]
BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Match: A0A6G0XRS4_9STRA (zf-LYAR domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRS4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.850e-31
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = 2 
Query:  119 MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTSCVSEEQKYQGALFKAPK-AKQKNRGVNEIWADAVLLAARNASTGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVDGVKNDISAQEK 580
            MV+FVCE CNETLKK +V+ H   C+NCW VTCVDC   F+GD + +HTSC+SE QKY+GAL++ PK +KQ  +   E W D +      ++T   PK   A L R+    NVPR++ KF NF++NS+ V       KLW +++   N +   ++
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCRNCWAVTCVDCQVIFKGDDYAQHTSCISEAQKYEGALYQGPKGSKQAKKNPQERWMDLI-----QSTTAPDPKVNQA-LQRIAGYDNVPRKKPKFLNFLRNSVGV--TGVEEKLWAFLEAEFNKVKETQE 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig121.1577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G289_ECTSI3.260e-11765.31zf-LYAR domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z9A3_9STRA8.050e-4247.20zf-LYAR domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4DDA0_HETAK1.780e-3947.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SQW7_9STRA5.650e-3949.66Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7R9UG70_9STRA7.510e-3845.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TWJ6_9STRA5.750e-3348.68Zinc finger, C2H2, LYAR-type n=1 Tax=Nannochlorops... [more]
A0A7S3HA97_9STRA7.840e-3345.45Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1FM11_PYTOL9.290e-3248.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A4Z0P0_9STRA9.510e-3251.56zf-LYAR domain-containing protein (Fragment) n=1 T... [more]
A0A6G0XRS4_9STRA1.850e-3143.87zf-LYAR domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig121contigP-lacustris_contig121:153230..157907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.3
Seed ortholog evalue5.3e-97
Seed eggNOG ortholog2880.D7G289
Preferred nameLYAR
KEGG koko:K14785,ko:K15263
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0001750,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005929,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030097,GO:0030099,GO:0030100,GO:0030154,GO:0030218,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0034101,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042592,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0045807,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0060627,GO:0061515,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0120025,GO:0120038,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.erythrocyte development
EggNOG OGsKOG2186@1,KOG2186@2759
Ec32 ortholog descriptionZinc finger, C2H2, LYAR-type
Ec32 orthologEc-16_002050.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons7
Model size1644
Cds size1086
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.3887556-UTR-P-lacustris_contig121:153229..1533471622815530.3887556-UTR-P-lacustris_contig121:153229..153347Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 153230..153347 +
1693493592.4532568-UTR-P-lacustris_contig121:153229..1533471693493592.4532568-UTR-P-lacustris_contig121:153229..153347Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 153230..153347 +
1622815530.4936945-UTR-P-lacustris_contig121:157467..1579071622815530.4936945-UTR-P-lacustris_contig121:157467..157907Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 157468..157907 +
1693493592.537135-UTR-P-lacustris_contig121:157467..1579071693493592.537135-UTR-P-lacustris_contig121:157467..157907Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig121 157468..157907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.402438-CDS-P-lacustris_contig121:153347..1533801622815530.402438-CDS-P-lacustris_contig121:153347..153380Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 153348..153380 +
1693493592.468883-CDS-P-lacustris_contig121:153347..1533801693493592.468883-CDS-P-lacustris_contig121:153347..153380Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 153348..153380 +
1622815530.4194767-CDS-P-lacustris_contig121:153914..1540221622815530.4194767-CDS-P-lacustris_contig121:153914..154022Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 153915..154022 +
1693493592.4778745-CDS-P-lacustris_contig121:153914..1540221693493592.4778745-CDS-P-lacustris_contig121:153914..154022Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 153915..154022 +
1622815530.4314895-CDS-P-lacustris_contig121:154384..1544441622815530.4314895-CDS-P-lacustris_contig121:154384..154444Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 154385..154444 +
1693493592.496409-CDS-P-lacustris_contig121:154384..1544441693493592.496409-CDS-P-lacustris_contig121:154384..154444Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 154385..154444 +
1622815530.445478-CDS-P-lacustris_contig121:154970..1551291622815530.445478-CDS-P-lacustris_contig121:154970..155129Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 154971..155129 +
1693493592.5050504-CDS-P-lacustris_contig121:154970..1551291693493592.5050504-CDS-P-lacustris_contig121:154970..155129Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 154971..155129 +
1622815530.4609983-CDS-P-lacustris_contig121:155357..1556071622815530.4609983-CDS-P-lacustris_contig121:155357..155607Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 155358..155607 +
1693493592.5128982-CDS-P-lacustris_contig121:155357..1556071693493592.5128982-CDS-P-lacustris_contig121:155357..155607Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 155358..155607 +
1622815530.4716277-CDS-P-lacustris_contig121:156468..1566861622815530.4716277-CDS-P-lacustris_contig121:156468..156686Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 156469..156686 +
1693493592.5207083-CDS-P-lacustris_contig121:156468..1566861693493592.5207083-CDS-P-lacustris_contig121:156468..156686Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 156469..156686 +
1622815530.482692-CDS-P-lacustris_contig121:157209..1574671622815530.482692-CDS-P-lacustris_contig121:157209..157467Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 157210..157467 +
1693493592.5287318-CDS-P-lacustris_contig121:157209..1574671693493592.5287318-CDS-P-lacustris_contig121:157209..157467Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig121 157210..157467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig121.1577.1prot_P-lacustris_contig121.1577.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig121 153348..157467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig121.1577.1

>prot_P-lacustris_contig121.1577.1 ID=prot_P-lacustris_contig121.1577.1|Name=mRNA_P-lacustris_contig121.1577.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=362bp
MVYFVCESCNETLKKAQVERHLYSCKNCWGVTCVDCNFTFEGDTFREHTS
CVSEEQKYQGALFKAPKAKQKNRGVNEIWADAVLLAARNASTGVAPKPLC
AHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDDASVSKLWGYVDGVKNDIS
AQEKKGAAAGATGTATSVAVTVTEAAATAEESREEAAPKIELETEPADKS
LRKGKKSQKRARQAEEAAQKNEKAEGSDGGSGTGKRPRGQQAGGAQPEEG
GRAGDGGVDAALCKALGKAAVGIVKKAPNKRMAVKELVKQAAAAVITAMG
EEGSSTSSNSSSSEHQPDGQQLRRALKQRLLKEGLRRLAVEGKVAVYSKE
AKSQSTICGQG*
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mRNA from alignment at P-lacustris_contig121:153230..157907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig121.1577.1 ID=mRNA_P-lacustris_contig121.1577.1|Name=mRNA_P-lacustris_contig121.1577.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4678bp|location=Sequence derived from alignment at P-lacustris_contig121:153230..157907+ (Pleurocladia lacustris SAG_25_93)
CACTGCACTCATCCATTGGCTCTCCACACCGCAGTGGGCAAGGTTCTGAA
CCTCTGCCATTGCAAGGGCTGCTGCAGGATCTACAACTACCTCTGTGGGC
TAAGTGCTTGCTGACAAGATGGTGTACTTTGTGTGCGAATCGTGTAACGA
GGTGTGTGTGGCGAGGAAGGGTTCAACCTCAAAATCGTTGTACCTTCCCG
TGTGCCCAAGGCGAGCGAAAGTGGCAAAACTTGAGCATCTTGTGTTGAGG
CAGCAACACGTGACACTCGATCTGAGTTCTCTGATGCTGTTGACATCTGA
GTTCCGACGCGTGTTGGGTTACATCCCGACAGGATAACCTGCCTGTGCGC
TGCCCAAAGGTACATACTTTGAAGTGCACATCAGAGTAAAGGACGCCGCA
CCAACCTAGTGCCGGTATTTTTTTGCGGGTAGCTTGACCCGTGTCGGCGA
AAACCTTTGGTACGTACGTGACGCACGACTCACACGGGAGAATACTACTC
GTACATCGAACCACGCTGGTGCGGATTTTGCTGGAGCATGTCTACTCTCG
TGGTGGAAGTTACACGGATTAGCGAACGTAGCGCACATGCCCACACGGCG
GCTATTGTCGCTGTCGCTCTTCTTGACGGCGATGCTCTGTCCCTCTTTAT
GTGATCCTGCTGTGCGTGAATCGTGCTGTCCGTAGACCCTGAAAAAGGCA
CAGGTCGAGAGACACCTCTACTCGTGTAAGAATTGCTGGGGCGTGACTTG
CGTGGACTGCAACTTTACCTTCGAAGGCGACACGTTCAGAGAGGTATGTA
CAGTATGAGGGAGTCGAGAAGGAGGCACGGACAGACGTTTCGTACAGGCG
TACGGCAGTCTACCCCCGTTCCACAGATGGCTATTTACGCGGTTCGGCCT
CAATGCCTGGCGCTCCCTGCGGTGTGATGTGCAACTAGTCGCCCGCCAGA
CAACTGCTGGTTCGAAGAGCGGTGCGACTAGTTGTCAGCGCACAACTCAC
GGGTAGCTGTGGTCTCGCACAACTATTTTGGTTGTACGTGTTGGTTGTAA
CTGTACAGGGTGTGGAAGCTTGTGAGTCGGCCGGTTTGCCGTACTTGAAC
CGCCGTGTTTGTCTCATCAATCACGCGCGTGTGCACCCATCCCCCTCCTT
TGCAGCACACGTCGTGCGTGTCGGAGGAGCAGAAGTATCAAGGAGCATTG
TTCAAGGCTCCAAAGGTGCGATTCCTTATGGTAAACCTTCCGGTACCCGT
GGCTTGGAAGCCCTCAACAGCATTACCGTAGCCTGACTTTCAGCGTAGCC
GGGGCGAGTAAGCACCACCTCGGCGGCTGTTTCTTGGCCTCCTGTCCAAC
GGGTACCTGTGGCTTTGGCACTATATTAGGTTTAGGTATATCATATTTTA
TTTTGCATCTGTATTCAAGCAAGAGCTGGACACGAGAAATAGGCTAGTCG
ACACCGTGGTGTGGGCATCTGTTTGGCCACCTTTCATCTTTCGTTCGATG
CGGGGGGGCGACAGTTGCAGGTGCCTGCGATTGAATACATAGAACTCGTT
CTCCCGTGTCCAAGCGCTCGTTTATCCTCAGCCCGATACGATGAAGCGCT
AAGCAGAACATGAAGGGCACCGGGAGAGAAAACTTGCAAGGATGCACTTG
AGACTCTGTAGGCTGGTCGGTCTCCTCCTCACCCCACCCACGGCCCTCCC
GGCGTTGTTCGCATGCACGAACACGCGTGCAATCACATCAGGCCAAGCAG
AAGAACCGCGGGGTGAACGAGATCTGGGCCGATGCAGTCCTCCTGGCCGC
TAGAAACGCCTCTACCGGTGTCGCTCCCAAGCCTCTGTGCGCACATCTGG
TTCGCATGGGGGACCTCGGCAACGTGCCGCGCCAGGAGAAAAAGTTCAAG
GTGCGGAAGGCAAACAACAGCAAAGCCAATGACGCAGGCGCGGGCCAGGG
ATAGTTTGGCAAAAGTCTCCTCTTCCTCGGCTTCGAATGCGGTGCGCTTT
GTGTGTAGGCAGCTCTTTAACTCAATGTCGTGTCTTAGGTAAAAACCGTT
GGCGCTTATTTCTATCGACGCGTGCTCGCTGCCGGATGCTCTTGGTGTTG
TTCGGGCACAACCCCCCGGAGAACACAGAACTTCGTGAAGAACAGCCTGC
GCGTGTTCGACGACGCGAGCGTGTCCAAGCTGTGGGGCTACGTGGACGGC
GTCAAGAACGACATTTCGGCGCAAGAGAAGAAAGGAGCGGCCGCCGGAGC
GACGGGGACGGCGACTTCGGTGGCCGTCACAGTCACAGAAGCCGCGGCTA
CAGCCGAAGAGTCAAGGGAGGAAGCCGCCCCGAAAATCGAACTGGAAACA
GAGCCCGCGGACAAGTCGTTAAGGAAAGGTGTGCACCCCGATGTGTCTCG
AACAGAACGTTAGGAGAAGGACAGCGGTTGCTTATTTTTCGTGAGCAGGG
CAGGAAGTTGTAACGCCTGTAGAACGCGAGGGAGGGAGAAGAAACCGTTG
TTGGGGCGCGACGTAAGTCTAGGCCCACGGGAAACGCGAGGGAAGGGTGT
TTGTCGTGTGTCGAACATGACCGCGCCGTAGGTCTTTATTGTGTAACCTT
GCACACATTCATGCAAAGGCTGAGTTCGGTGAGGTACGGGACATCGTGCC
GATTTCGCAACAAGTGTCGGGTGGTATGACTGGCTTGTGGAGCTCACCAA
AGGGTCGGACATGGTACAGGCTTGTACCCATACTAGCGCCCGACCCCGAG
TACTGCAGCGAGGACCCGGGTTCAGGGGGGTTTGCCGCGGGCGTCCTGAG
GTCGCCTAGAGCGGTTGGTGAGGCACTGGACAACGTACCGCACTTACCGG
AGTGTTTCGGTGATGCACTGGAAGTAGTATATCGAACGCGCGAGAAGTAT
AACGGGTGCCGACCCCTGAAACACGTTGATACCGAACACCAGCTTGCGTG
CATGTGTATGCGTAGTGTTGTTGAAATTGTAAGACACTGTGAATGGAGTA
CGTTCGATGACACGAGACGCTCCTTCGACAGCGTCGAGAATCCATGCATC
GGACAAATCAAACGCAGCTCTTCATGTTGGCATCCAACACACTACTCACA
ATCCACAACGCGGCGTCATGCGCGTATGCACCTCAACTTCCGAACTCGTG
CCAAACACCTGTTCGTGTTCCCGCCCGCCTCACCCCCGCCCCCCGCCTCT
CCCTCACGAATCACGGGTGTGGTCGTCGATTGCCTCCAGGCAAAAAGAGC
CAGAAAAGAGCAAGACAAGCAGAAGAAGCAGCGCAGAAAAACGAGAAGGC
AGAAGGCAGCGATGGCGGCAGCGGCACAGGAAAAAGACCGCGAGGTCAAC
AAGCCGGAGGAGCACAGCCGGAAGAGGGGGGGCGCGCGGGAGACGGTGGC
GTGGACGCGGCCCTTTGCAAGGCATTGGGCAAGGCGGCCGTGGGGATTGT
GAAAAAGGTGTCTCGAGTGATGTGGTCAGCAGGACCACGTTGGCTTGTTG
TTGTCTTTGAAACCCAATTTGTTTTGCGGGACGGTCGCGATTCTTGGCTT
CCTTGCTTCTCTATTTTCTTTGAGTAGTGCTTGTAACGGGCACACAGCAG
TTCCCTTGGAATGTGCAATCTACACAGCGCAGCGGGGACACAAAATATTC
CAACCCCTTCCTCCCCGTGAACTGGGCGTTGATATTGAATTGTCGGGTGA
GCATCTGTGTTGTGACCGGTTGAAAAAATCTTCGACCTCTGACCTGTGTT
GCCCCTCCATTAATACGGTAGCCCGTATTGATCCCTCGTGGATAAAAAGG
ACGCACTATCGGCAGGCTTGGCTTTTGAAACGTTGCGTCTGGCTCGTCGA
GTTTTCCTGGAAATCGCATGCTTATTATGGTCCATGTGTCTGCCTCCCTC
CCTCTCTTGTTTCCCTCTTCGTTCCTCATAACCCTCGCCCCCCCTCGCTA
CTACGTACTCCCTTTTCCTACTACCACCAGGCACCGAACAAGAGAATGGC
GGTAAAGGAACTCGTCAAGCAGGCGGCGGCAGCGGTTATAACGGCAATGG
GCGAGGAGGGCAGCAGCACCAGCAGCAATAGCAGCAGTAGCGAGCACCAG
CCGGACGGCCAGCAGCTGAGGCGTGCCCTGAAGCAACGGTTGCTGAAGGA
AGGCCTCCGAAGGTTGGCGGTGGAAGGGAAGGTGGCGGTCTACAGCAAGG
AGGCCAAATCCCAGTCGACAATATGCGGTCAGGGATAGAAACGGGCGGGT
GCAATCGGTGGAGCTAGGCGTGTTGGTACCGCCGTAGAAGCCACGGTAGA
TGCGGACGGTACGAGCGTCGCCGCCGCACCATACAAGTAACGGGGGTGCG
GGGAGAACGAAACGGTCGTGTGTGCTTCGAAGGCGGCCTGACCTGCTGCT
ACCAATTCCATTGATTCAAGTCGGGGTGTGGTTGGCCTCAGAAGGCAGAG
CGTGTGGCAAGCGGCTCTGCCGCCCCGTGGATTTGGTGATCGGCTGGAAC
CGACGGGCCTCTTGATGGCAGGCGCGGCAACAGCCACGGGAGTCCGTGAA
CGGAGATCGCGTGAGCAACGTTTGTAAAAAAGCGTGGCGGATTAAAGCTT
TTAACATCGCGCCTGCACCAATGAAAGTGCTTCTGCTTGAAAGGGTTGGG
CCTGCCTCAACTCGCGAGAACTTCCAAC
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Coding sequence (CDS) from alignment at P-lacustris_contig121:153230..157907+

>mRNA_P-lacustris_contig121.1577.1 ID=mRNA_P-lacustris_contig121.1577.1|Name=mRNA_P-lacustris_contig121.1577.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2172bp|location=Sequence derived from alignment at P-lacustris_contig121:153230..157907+ (Pleurocladia lacustris SAG_25_93)
ATGGTGTACTTTGTGTGCGAATCGTGTAACGAGATGGTGTACTTTGTGTG
CGAATCGTGTAACGAGACCCTGAAAAAGGCACAGGTCGAGAGACACCTCT
ACTCGTGTAAGAATTGCTGGGGCGTGACTTGCGTGGACTGCAACTTTACC
TTCGAAGGCGACACGTTCAGAGAGACCCTGAAAAAGGCACAGGTCGAGAG
ACACCTCTACTCGTGTAAGAATTGCTGGGGCGTGACTTGCGTGGACTGCA
ACTTTACCTTCGAAGGCGACACGTTCAGAGAGCACACGTCGTGCGTGTCG
GAGGAGCAGAAGTATCAAGGAGCATTGTTCAAGGCTCCAAAGCACACGTC
GTGCGTGTCGGAGGAGCAGAAGTATCAAGGAGCATTGTTCAAGGCTCCAA
AGGCCAAGCAGAAGAACCGCGGGGTGAACGAGATCTGGGCCGATGCAGTC
CTCCTGGCCGCTAGAAACGCCTCTACCGGTGTCGCTCCCAAGCCTCTGTG
CGCACATCTGGTTCGCATGGGGGACCTCGGCAACGTGCCGCGCCAGGAGA
AAAAGTTCAAGGCCAAGCAGAAGAACCGCGGGGTGAACGAGATCTGGGCC
GATGCAGTCCTCCTGGCCGCTAGAAACGCCTCTACCGGTGTCGCTCCCAA
GCCTCTGTGCGCACATCTGGTTCGCATGGGGGACCTCGGCAACGTGCCGC
GCCAGGAGAAAAAGTTCAAGAACTTCGTGAAGAACAGCCTGCGCGTGTTC
GACGACGCGAGCGTGTCCAAGCTGTGGGGCTACGTGGACGGCGTCAAGAA
CGACATTTCGGCGCAAGAGAAGAAAGGAGCGGCCGCCGGAGCGACGGGGA
CGGCGACTTCGGTGGCCGTCACAGTCACAGAAGCCGCGGCTACAGCCGAA
GAGTCAAGGGAGGAAGCCGCCCCGAAAATCGAACTGGAAACAGAGCCCGC
GGACAAGTCGTTAAGGAAAGAACTTCGTGAAGAACAGCCTGCGCGTGTTC
GACGACGCGAGCGTGTCCAAGCTGTGGGGCTACGTGGACGGCGTCAAGAA
CGACATTTCGGCGCAAGAGAAGAAAGGAGCGGCCGCCGGAGCGACGGGGA
CGGCGACTTCGGTGGCCGTCACAGTCACAGAAGCCGCGGCTACAGCCGAA
GAGTCAAGGGAGGAAGCCGCCCCGAAAATCGAACTGGAAACAGAGCCCGC
GGACAAGTCGTTAAGGAAAGGCAAAAAGAGCCAGAAAAGAGCAAGACAAG
CAGAAGAAGCAGCGCAGAAAAACGAGAAGGCAGAAGGCAGCGATGGCGGC
AGCGGCACAGGAAAAAGACCGCGAGGTCAACAAGCCGGAGGAGCACAGCC
GGAAGAGGGGGGGCGCGCGGGAGACGGTGGCGTGGACGCGGCCCTTTGCA
AGGCATTGGGCAAGGCGGCCGTGGGGATTGTGAAAAAGGCAAAAAGAGCC
AGAAAAGAGCAAGACAAGCAGAAGAAGCAGCGCAGAAAAACGAGAAGGCA
GAAGGCAGCGATGGCGGCAGCGGCACAGGAAAAAGACCGCGAGGTCAACA
AGCCGGAGGAGCACAGCCGGAAGAGGGGGGGCGCGCGGGAGACGGTGGCG
TGGACGCGGCCCTTTGCAAGGCATTGGGCAAGGCGGCCGTGGGGATTGTG
AAAAAGGCACCGAACAAGAGAATGGCGGTAAAGGAACTCGTCAAGCAGGC
GGCGGCAGCGGTTATAACGGCAATGGGCGAGGAGGGCAGCAGCACCAGCA
GCAATAGCAGCAGTAGCGAGCACCAGCCGGACGGCCAGCAGCTGAGGCGT
GCCCTGAAGCAACGGTTGCTGAAGGAAGGCCTCCGAAGGTTGGCGGTGGA
AGGGAAGGTGGCGGTCTACAGCAAGGAGGCCAAATCCCAGTCGACAATAT
GCGGTCAGGGATAGGCACCGAACAAGAGAATGGCGGTAAAGGAACTCGTC
AAGCAGGCGGCGGCAGCGGTTATAACGGCAATGGGCGAGGAGGGCAGCAG
CACCAGCAGCAATAGCAGCAGTAGCGAGCACCAGCCGGACGGCCAGCAGC
TGAGGCGTGCCCTGAAGCAACGGTTGCTGAAGGAAGGCCTCCGAAGGTTG
GCGGTGGAAGGGAAGGTGGCGGTCTACAGCAAGGAGGCCAAATCCCAGTC
GACAATATGCGGTCAGGGATAG
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