mRNA_P-lacustris_contig1202.1542.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1202.1542.1
Unique NamemRNA_P-lacustris_contig1202.1542.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1202.1542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1202contigP-lacustris_contig1202:44808..45605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1202.1542.1prot_P-lacustris_contig1202.1542.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1202 45061..45492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.5822742-UTR-P-lacustris_contig1202:44807..450601622815523.5822742-UTR-P-lacustris_contig1202:44807..45060Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1202 44808..45060 +
1693493588.4791086-UTR-P-lacustris_contig1202:44807..450601693493588.4791086-UTR-P-lacustris_contig1202:44807..45060Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1202 44808..45060 +
1622815523.6018965-UTR-P-lacustris_contig1202:45492..456051622815523.6018965-UTR-P-lacustris_contig1202:45492..45605Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1202 45493..45605 +
1693493588.4995515-UTR-P-lacustris_contig1202:45492..456051693493588.4995515-UTR-P-lacustris_contig1202:45492..45605Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1202 45493..45605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.5918856-CDS-P-lacustris_contig1202:45060..454921622815523.5918856-CDS-P-lacustris_contig1202:45060..45492Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1202 45061..45492 +
1693493588.4897187-CDS-P-lacustris_contig1202:45060..454921693493588.4897187-CDS-P-lacustris_contig1202:45060..45492Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1202 45061..45492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1202.1542.1

>prot_P-lacustris_contig1202.1542.1 ID=prot_P-lacustris_contig1202.1542.1|Name=mRNA_P-lacustris_contig1202.1542.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=144bp
MEGRAFALGETHRTGMCCVCFRPIYFWRQSPDQGETCTTRCGVLTDYTFQ
CIFLFPLEPTGVTQKGVHTGAFFLLFMSFLPHLPPAVRASILIARRVRPS
HSLVNVANVEVWYSRDFQLFSLSPANLPNFSPSGGVRTQDPCC*
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mRNA from alignment at P-lacustris_contig1202:44808..45605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1202.1542.1 ID=mRNA_P-lacustris_contig1202.1542.1|Name=mRNA_P-lacustris_contig1202.1542.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=798bp|location=Sequence derived from alignment at P-lacustris_contig1202:44808..45605+ (Pleurocladia lacustris SAG_25_93)
CTCTGCTCGCTGCCTCCGACGCGCGCAACGCCTGATTGGGCCAGGCGTAC
GTGGAACAAATACAACAGGGTGGCGTAGAACCCAAGATGTTCGTTTGGCC
GTTGGTGCTACGTACATCGTTGATGGGCACTCTGCTACTTGAGGCATGAA
TTCGGACGATACGAGTCGCAGTCCGTAACTCTTGACGGAAGCTGCAAGAA
ACAAACACGGCAGCAACAACGGCAAGCCGCCAAAGCAAAAAAGTAGGTAG
AAAATGGAGGGCAGGGCCTTCGCTTTGGGGGAAACACATCGCACAGGTAT
GTGTTGTGTGTGTTTTCGTCCCATTTATTTTTGGCGACAGTCCCCCGATC
AAGGTGAGACGTGTACTACACGTTGCGGTGTATTAACGGACTACACTTTT
CAGTGTATTTTTTTATTTCCACTAGAACCAACCGGGGTCACACAGAAGGG
GGTACACACAGGGGCTTTTTTTCTTCTTTTCATGAGTTTTTTGCCCCACC
TTCCTCCTGCGGTGCGTGCCTCAATTTTGATCGCGAGAAGGGTTCGGCCG
TCCCATTCCCTCGTCAACGTTGCTAACGTCGAAGTTTGGTACTCACGAGA
TTTTCAGCTTTTTTCGCTTTCACCCGCAAATTTGCCAAACTTTTCACCCT
CCGGGGGGGTACGAACTCAAGACCCTTGCTGCTAGATGGCTTCGAGGCTA
CCACTAGACCACGTACAGGTATCGCTTCACACATAGAGCGAACGCTAACC
CTGGCAAAGGTCACCTGGGAAAACGCGTCGATAAGGTAAAGACAGCTG
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Coding sequence (CDS) from alignment at P-lacustris_contig1202:44808..45605+

>mRNA_P-lacustris_contig1202.1542.1 ID=mRNA_P-lacustris_contig1202.1542.1|Name=mRNA_P-lacustris_contig1202.1542.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=864bp|location=Sequence derived from alignment at P-lacustris_contig1202:44808..45605+ (Pleurocladia lacustris SAG_25_93)
ATGGAGGGCAGGGCCTTCGCTTTGGGGGAAACACATCGCACAGGTATGTG
TTGTGTGTGTTTTCGTCCCATTTATTTTTGGCGACAGTCCCCCGATCAAG
GTGAGACGTGTACTACACGTTGCGGTGTATTAACGGACTACACTTTTCAG
TGTATTTTTTTATTTCCACTAGAACCAACCGGGGTCACACAGAAGGGGGT
ACACACAGGGGCTTTTTTTCTTCTTTTCATGAGTTTTTTGCCCCACCTTC
CTCCTGCGGTGCGTGCCTCAATTTTGATCGCGAGAAGGGTTCGGCCGTCC
CATTCCCTCGTCAACGTTGCTAACGTCGAAGTTTGGTACTCACGAGATTT
TCAGCTTTTTTCGCTTTCACCCGCAAATTTGCCAAACTTTTCACCCTCCG
GGGGGGTACGAACTCAAGACCCTTGCTGCTAGATGGAGGGCAGGGCCTTC
GCTTTGGGGGAAACACATCGCACAGGTATGTGTTGTGTGTGTTTTCGTCC
CATTTATTTTTGGCGACAGTCCCCCGATCAAGGTGAGACGTGTACTACAC
GTTGCGGTGTATTAACGGACTACACTTTTCAGTGTATTTTTTTATTTCCA
CTAGAACCAACCGGGGTCACACAGAAGGGGGTACACACAGGGGCTTTTTT
TCTTCTTTTCATGAGTTTTTTGCCCCACCTTCCTCCTGCGGTGCGTGCCT
CAATTTTGATCGCGAGAAGGGTTCGGCCGTCCCATTCCCTCGTCAACGTT
GCTAACGTCGAAGTTTGGTACTCACGAGATTTTCAGCTTTTTTCGCTTTC
ACCCGCAAATTTGCCAAACTTTTCACCCTCCGGGGGGGTACGAACTCAAG
ACCCTTGCTGCTAG
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