mRNA_P-lacustris_contig12.1497.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig12.1497.1
Unique NamemRNA_P-lacustris_contig12.1497.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: D7FJT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT2_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.760e-67
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA 348
            MVIKTEVCAFSD R+YPGHGVRFIRRDGQPITL SAKCKSLL QRKKPAKLTWTQAWRRLNKKIKVEEV RRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA
Sbjct:    1 MVIKTEVCAFSDTRIYPGHGVRFIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKA 116
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: W7TW72_9STRA (60s ribosomal protein l24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW72_9STRA)

HSP 1 Score: 158 bits (399), Expect = 6.870e-47
Identity = 83/117 (70.94%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 351
            MVIKT++C+FS+ RVYPGHG+RF+RRD   +   +AK K L NQRKK A+L WTQ WRRL+KKIKVEE+ +RRTR+TTK  RAIVGASLEEIKKKR+QKPE R+AQREAA KEVK R
Sbjct:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKPE-RNAQREAALKEVKER 116
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: A0A6G0WHE0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHE0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.840e-46
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVK 345
            MVIKTE CAFS+ R+YPGHG R +R+DG    L+++KCKSL  QRKKPAK+ WT  WRR+NKK++VEEVARRR RKTTK+ RAIVG S++E+KKKR+QKP+VR+A REAA KE K
Sbjct:    1 MVIKTETCAFSESRIYPGHGSRLVRKDGNAYMLLNSKCKSLFLQRKKPAKIHWTLGWRRMNKKLRVEEVARRRARKTTKIQRAIVGVSVDELKKKRNQKPQVRAAAREAALKEAK 115
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: A0A024TG11_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024TG11_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.460e-46
Identity = 76/115 (66.09%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVK 345
            MVIKTE CAFS+ R+YPGHGVR +R+DG   TL+++KCKSL  QRKKPAK+ WT  WRR+NKK++VEE +RRR RKTTK+ RAIVG S++E+KKKR+QKP++R+A R+AA KE K
Sbjct:    1 MVIKTETCAFSESRIYPGHGVRLVRKDGNAYTLLNSKCKSLFLQRKKPAKIHWTLGWRRMNKKLRVEETSRRRARKTTKIQRAIVGVSVDELKKKRNQKPQLRAAARDAALKEAK 115
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: A0A836CJ11_9STRA (Ribosomal protein L24e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ11_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.470e-46
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQ 318
            MVIKT+VCAFS+ R+YPGHG+RFIR+DG P+  ++AKCKSLL QRKKPAKLTWTQ+WRRLNKKIKVEEV RRR R+TTK  RAIVGASL+EIK KR+  P+   AQ
Sbjct:    1 MVIKTDVCAFSEFRIYPGHGMRFIRKDGTPVVFINAKCKSLLMQRKKPAKLTWTQSWRRLNKKIKVEEVTRRRNRRTTKFQRAIVGASLDEIKAKRAAVPKKTPAQ 106
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: A0A8K1FKL7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKL7_PYTOL)

HSP 1 Score: 154 bits (390), Expect = 1.460e-45
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 351
            MVIKTE C+FS+ R+YPGHG R+IRRDG   T ++AK KSL  QRKKP K+ WT  WRR+NKKIKVEE+ARRRTRKT K+ RAIVG S ++I+KKR+QKP+VR+A REAA KE K R
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYIRRDGTVYTFLNAKSKSLFMQRKKPTKIVWTLGWRRMNKKIKVEEIARRRTRKTAKVQRAIVGVSADDIRKKRNQKPQVRAAAREAALKEAKDR 117
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: A0A6V1N3D6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N3D6_HETAK)

HSP 1 Score: 153 bits (386), Expect = 6.080e-45
Identity = 78/106 (73.58%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQ 318
            MVIKTE+CAFS+ R+YPGHG +F+RRDGQP+ L+S+K KSLL QRKKPAKLTWT  WRRLNKKIKVEE ARRRTR+  K  RAIVGASL+EIKKKR  KP    AQ
Sbjct:    1 MVIKTELCAFSEFRIYPGHGQKFVRRDGQPVMLISSKTKSLLLQRKKPAKLTWTVGWRRLNKKIKVEESARRRTRRAAKFQRAIVGASLDEIKKKRQAKPAASKAQ 106
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: A0A2D4BH65_PYTIN (60S ribosomal protein L24, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH65_PYTIN)

HSP 1 Score: 152 bits (385), Expect = 8.370e-45
Identity = 77/117 (65.81%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 351
            MVIKTE C+FS+ R+YPGHG R++RRDG   T +++K KSL  QRKKP K+ WT  WRR+NKKIKVEEVARRRTRKT K+ RAI+G S ++I+KKR+QKP+VR+A REAA KE K R
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYVRRDGTVYTFINSKSKSLFLQRKKPTKIVWTLGWRRMNKKIKVEEVARRRTRKTAKVQRAILGVSADDIRKKRNQKPQVRAAAREAALKEAKDR 117
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: T0Q6K9_SAPDV (50S ribosomal protein L24e n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q6K9_SAPDV)

HSP 1 Score: 151 bits (381), Expect = 3.290e-44
Identity = 74/112 (66.07%), Postives = 93/112 (83.04%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAK 336
            MVIKT+ CAFS+ R+YPGHG R IR+DG    L+++KCKSL  QRKKPAK+ WT  WRR+NKK++VEEV+RRR RKTTK+ RAIVG S+E++KKKR+QKP VR+A R+AA K
Sbjct:    1 MVIKTDTCAFSESRIYPGHGTRLIRKDGNAFMLLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVSRRRARKTTKIQRAIVGVSVEDLKKKRNQKPAVRAAARDAALK 112
[Close]
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Match: A0A7R9W543_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W543_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.670e-42
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    1 MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAKLTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKPEVRSAQREAAAKEVKAR 351
            MVIKT+VCAFS+ R+YPGHG RF+R+DGQ   L S+KC S+  Q+KKPAKL WTQAWRRLNKK  VE  ARR  R+  ++ RA+ GASLE+IK KR+QKPEVR+  R+AA +E+KAR
Sbjct:    1 MVIKTDVCAFSENRIYPGHGSRFVRKDGQLAILSSSKCTSMYMQKKKPAKLQWTQAWRRLNKKANVEVGARRTRRRAVRVQRAVAGASLEDIKAKRNQKPEVRAKARDAALREIKAR 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig12.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT2_ECTSI2.760e-6795.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TW72_9STRA6.870e-4770.9460s ribosomal protein l24 n=2 Tax=Monodopsidaceae ... [more]
A0A6G0WHE0_9STRA1.840e-4667.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TG11_9STRA2.460e-4666.09Uncharacterized protein n=8 Tax=Aphanomyces TaxID=... [more]
A0A836CJ11_9STRA4.470e-4673.58Ribosomal protein L24e-domain-containing protein n... [more]
A0A8K1FKL7_PYTOL1.460e-4567.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6V1N3D6_HETAK6.080e-4573.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4BH65_PYTIN8.370e-4565.8160S ribosomal protein L24, putative n=1 Tax=Pythiu... [more]
T0Q6K9_SAPDV3.290e-4466.0750S ribosomal protein L24e n=2 Tax=Saprolegnia Tax... [more]
A0A7R9W543_9STRA1.670e-4264.10Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig12contigP-lacustris_contig12:164559..172325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3.6e-52
Seed eggNOG ortholog2880.D7FJT2
Preferred nameRPL24
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0000075,GO:0000184,GO:0000278,GO:0000280,GO:0000902,GO:0000904,GO:0000956,GO:0001654,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009908,GO:0009987,GO:0010033,GO:0010458,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0021545,GO:0021554,GO:0021675,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031290,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042330,GO:0042788,GO:0042886,GO:0043009,GO:0043010,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045047,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048285,GO:0048367,GO:0048438,GO:0048467,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060041,GO:0060255,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071310,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090567,GO:0097159,GO:0097485,GO:0120036,GO:0120039,GO:0140014,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902626,GO:1903047,GO:1990904
EggNOG free text desc.assembly of large subunit precursor of preribosome
EggNOG OGsCOG2075@1,KOG1722@2759
Ec32 ortholog descriptionRibosomal protein L24e-related
Ec32 orthologEc-06_010260.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size441
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig12.1497.1prot_P-lacustris_contig12.1497.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig12 164559..172325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.455487-CDS-P-lacustris_contig12:164558..1646641622815514.455487-CDS-P-lacustris_contig12:164558..164664Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 164559..164664 -
1693493583.5955682-CDS-P-lacustris_contig12:164558..1646641693493583.5955682-CDS-P-lacustris_contig12:164558..164664Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 164559..164664 -
1622815514.4679012-CDS-P-lacustris_contig12:170423..1705401622815514.4679012-CDS-P-lacustris_contig12:170423..170540Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 170424..170540 -
1693493583.6072278-CDS-P-lacustris_contig12:170423..1705401693493583.6072278-CDS-P-lacustris_contig12:170423..170540Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 170424..170540 -
1622815514.4805-CDS-P-lacustris_contig12:171056..1711091622815514.4805-CDS-P-lacustris_contig12:171056..171109Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 171057..171109 -
1693493583.616306-CDS-P-lacustris_contig12:171056..1711091693493583.616306-CDS-P-lacustris_contig12:171056..171109Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 171057..171109 -
1622815514.4912355-CDS-P-lacustris_contig12:171742..1718201622815514.4912355-CDS-P-lacustris_contig12:171742..171820Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 171743..171820 -
1693493583.6264231-CDS-P-lacustris_contig12:171742..1718201693493583.6264231-CDS-P-lacustris_contig12:171742..171820Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 171743..171820 -
1622815514.502318-CDS-P-lacustris_contig12:172238..1723251622815514.502318-CDS-P-lacustris_contig12:172238..172325Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 172239..172325 -
1693493583.6350057-CDS-P-lacustris_contig12:172238..1723251693493583.6350057-CDS-P-lacustris_contig12:172238..172325Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 172239..172325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig12.1497.1

>prot_P-lacustris_contig12.1497.1 ID=prot_P-lacustris_contig12.1497.1|Name=mRNA_P-lacustris_contig12.1497.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=147bp
MVIKTEVCAFSDVRVYPGHGVRFIRRDGQPITLVSAKCKSLLNQRKKPAK
LTWTQAWRRLNKKIKVEEVARRRTRKTTKLNRAIVGASLEEIKKKRSQKP
EVRSAQREAAAKEVKARKAASKAAKGSAVAMKAKPVASKMKGGNTK*
back to top

mRNA from alignment at P-lacustris_contig12:164559..172325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig12.1497.1 ID=mRNA_P-lacustris_contig12.1497.1|Name=mRNA_P-lacustris_contig12.1497.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7767bp|location=Sequence derived from alignment at P-lacustris_contig12:164559..172325- (Pleurocladia lacustris SAG_25_93)
ATGGTCATCAAGACGGAGGTCTGCGCGTTCTCGGACGTCCGCGTTTACCC
CGGGCACGGTGTGCGCTTCATTCGCAGGGATGGGCAGGTAAGCCAATCCA
TTCCAAGGCTCAGAACCAACCTCCGCGAGCCTTACAATTTATTGTGTACG
TCCTTTGCATCCGCAGAGAGTAGAGCGGCAGGCTTGCTCGTGGGAGGAGG
TTGCTAGGAGATGTTTGGCTAGCAATTCGTGGATTGGAACCCTGTGGTGA
TAGTGCGTGAAAAGGGGGACGGCTGTGATTCTCGGCTCCGCTTTTTTTTT
GCCCTTGACACACACAGGTATATCCTCACTGTACAGTATAGAAGGTCCGT
TTTGGGTGGTCGCTCTGATCCGGCTGTCGTTACGTGTTGATCTGAACGTC
TTGCCGAGTGCTGCTCTCCTGCTGAATTTTAGAGCGTCAGCCCCTTGTGC
TCTCACAAATGTCGCGGTTGTGTATGTGCTTGTCTTGCCATATGTTCCTC
CTCAGCCTATCACCCTCGTCTCAGCCAAGTGCAAGAGCTTGCTGAACCAG
AGGAAGAAGCCGGCTAAGCTCACTTGGACCCAGGTGAGGACACCACCAAC
ATCTAACACCACTACATCGATCACTTTTCAGTCAAGAATTTTATTAGTGT
TTAGTTGGCAGTGCATGATAGGCAAGACTGGGAGCCGGAGAGAGCCTGAG
TAGATGGATTGTTGGTACAAAGAACGCATTTTTTCATATCTTCAAATACT
GCTGTCCCATCCAATATTTGACATTTACCTACAATAGCTGTACGCTTGTT
GGCACTATGTGGGTCCGTGTTGTCCTGGTGCTTTCGCTGCAAAATAACCC
TGGCGTGTCTGCAGAGCGGGTCCACAGTTACAGCAGCGTCTTGAGGAGGA
TGAAAAAAATCTGTGTGGGAGATGGTGAATCGTGTGGGCGTTTGCGAGTG
ATTTGATACGTAACATGACGGGAGCTCACATCAAGCCGGAACTTCGTGGC
ACATGGTAATGATGGTAATGGCAGTGGTAACGCCGGAGAGAAGAGCCCAC
CCTGGCCAAATCGTGTTCACTGCTCTCACTCCAAGAAGTACGCGAAGACT
CGTTTGTCGATGCATTTGGGGGTCACTACTACCCTCTTATCTTTGGTCTC
GTGTTGTATGCATAGACTAGACTAATGGGGTACGACTGTACAAATGAACG
ATGAAACGTCTGGCAGGCATGGAGGCGCTTGAACAAGAAGATCAAGGTGG
AGGAGGTCGCTCGCCGTCGGTAAGCGATGCGATGACATTGTGACACACCG
ACCAACAACAATAGATCTCCTCCGAAGGAAGGGGTTGTTGCTGTTGCTTG
TTTTGGTCGTTTCCTGCATTTTCTGTGCCAGCCCGCGAGCCCTTGCTGCT
CCCCTTCGGTTGTGGAAACTCTCGCCACACAACCATATCTCTGAGAACGC
GTCGTGTTCCTCTTCGCGGTACGGTTATGCCTTGTAAACGGTACGGTGAT
TTTGCTCCCCATGTGTCATGTGTTGTGTTGGTTCAAACACTCAACACCAC
GATTTGTTCCTCTAAACGGGACCTAAACTGCGCCCGTAAAGGCTAACGGC
GGTGGTGGGAGAGATGCCGCGGGGAACATCGTCGTGCTTTCGGGCCTCTC
TGCTACGGCTGCAGCTGCTGCCCTCTCTCTCCCCTCTCGTTTCGGTGCTT
TCTCGCTTGGGCATGCCGCCACACGCATGCGTAACAACAAGCACGACGCT
TTTGCAACAAAAACGAAACGAAAACGAAAACACAGCACGCGCAAGACCAC
CAAGCTGAACCGCGCGATCGTTGGCGCCTCGCTGGAGGAGATCAAGAAGA
AGCGCAGCCAGAAGCCGGAGGTCCGCAGCGCACAGCGCGAGGCGGCCGCC
AAGTGAGTCGAATTGTCGTTGATACCGTCCCGTTGAAACCATCTTTTGCC
GCACTCTAAATTTAGGTTCGCCGTTGCGAAGTCAGGCGACATTGCGCCGC
ACCTGCTGTAGTCTCTTTGTGGACACACCCTCGCGCCGCTGAGTTTTGTT
TCCGCGTTCTAATAGCATGTAATAGAACAACGTAAATGAGTAGAGCGACG
ACATATCATATAGTTCGAAGTATTACGCGATGCACCTCTCCTAGCCCCAT
TGTCTGCTCCCTGCCATCACATGAGCACGAGCTGGTAGACTCATCTTTGA
CTGCATTCTTTATGGAAGTAGTTGCCTTTGCCTTGCCTTGTGAATGTTGC
GCGAGCAGCGAGATGCGGCCGCTAAGTCCGCGAAGCTGCACTTGTTTATC
GAAAATCGCGTCAGCGTACGACGTACATGACGCACTTACACGTAGTCGTT
GAAACAACGGCAACGTGCGGTGCGTTTTCCGGTGCACACACAACTTTAAC
CACCATCCAGGCTGACGTGGAAAGATGTCATGCCCACAGACTCTCGCACC
TCGGGCCGAGTCTCCTCGCCGCAAGGGAAATGCTGGCAACGCCGAACGCC
CATGTTTTCCTTGAAAGTCTTCCTTCCCGAGGTTCTTCGAAACGTTATGT
CTCGTTTGAGGTTGACCGTCTCTCGGTTGTGACGTTTTACGGCCTCAAGG
CCGTTTCTCCCCGGAAGTCTTGTCGCTGACGTACAAAGTCTTCATGCAAA
CATATGTATATTTTTGTGAAGGATTGGGCGGTTCTATGCAAAGGCTTGAA
TGGTGTAGGGTATGGAATGTGTGGGGGAGGGGGGGGCAGCACTGAGACAT
TGGACGTTTCCAGTCGCGGGTGGCCAGGTGAGATCGAGGGTGGGGAAAGC
GCATGCGAATTTAGGTCGATGACGGTGGTGACGAATTGAGAGCGAGGTTC
GGTGCTCCCCTGGGACGGAGCAGACAGCTGAGAGTGCGTTAAACGACGTC
GCGGGCGGTGCGGAATTGATTGTACCACAGGCCTTCCTGGCGATGAGCGG
GGGATGGTGTGAATTAAGGGATTGGCGAGAAGCGTTGGAGAGTACGTTGT
GGAGCTATATCTCGTACTCGTCAGATGCCTTGTGGAGGAGCACCTTAACC
ATGGCTTAGCTTGTGGATAAGCAATTTTACGGTATCCTGCTCGGTTTTGT
CAGTTGAGTTCGTCAAACGATCTTCCCCTCGAGGAGGGGAGTAATCGCAA
CGGGAGGCACCCTGTCTGGCAGATCTTAGCTCCTGACAGGGATCGTACCC
CCCTGCACACAACAATTGGGCTGGTTGGCGTCGCGCATGCCCATGACCAA
TGTCAGGAGCTAAGATCTGCCATACAGGGTGTCTCCTTTGCGATTACTCC
CCTCCTCGAGGGGAAGATCGTTTGACGAACTCAACTGACAAAACCGGGCA
GGAGATCGCCAAAGTGCTTCTCCACAAGCGATACTATGGGTAAGGTGCTC
CTCCACAAGGCATCTGACGAGTACGAGATAGAGCGCATCACTGTACTCTA
CAACGCTTCTCGCCAATCCCCTTGATTCACACCATCCCCCGCTCATCGTC
AGGAAGGCCTGTGATACAATCAATTCCGCACCGCCCGCGACGTCGGACCC
CAACGCACTCTCAGCTGTCTACTCCGTCCCAGGGCAGCACCAAACCTCGC
TCTCCTATTCGTCACCACCGTCATCGACCTAAAACTCGCATGCGCTTTCT
CACCCCGCTTTCTCACCCGGCCACCCGCGACTGGAAACGCCCAACGTCTC
AGCGCTGTCCCCCAACCCCCTACTCCATTCTAGGCCTGCCGGATCAGAAC
TGCCTGAGTTTTAGTGAGGTACCTGACTTTGGCCAGGCAATGTAAAACCT
TGAGCCAGGGAACCGTATGTAAGCGCCAACTCCCATAAAATTGTGACTTG
AGGTCAAAGGGGATGTCGTCAGACACATGAACAGGGTACTATCATGTCTT
GCGGGGTTCGCTCGCGTCCAGGTCATGTGTACGACGGGTGTCTAAGATCT
ATAAACAAACTTAGGCAAGTCTCAGGCATAGTTTCAGCCTGATCCGCCAA
GGCCTAACTCCATACCCTGCACCACTCTACCCTTTGCATGGAACCGCCCA
ATCATCCTAAAAAAAAAAATGCCTGTAGACTATTTCAGCAACAAGGCTTC
CGGGGAGAAACCGTCCTTCATATGGAGAATCGGCCCAGAAATGAATTTCT
TTCGATTTCCGTGCTGACATTTGCGTTGTTAAGAGTTGATGCCGTGGTTG
GTTGCATGAGATGCCAGGAGTCGAGTGCGTGGCCAACTCAGGTGCAGACC
AATAACAACAACAACAACAACAACAACAACAACAACCCTAGTTCGCAGTT
ACCCCTTCGCTAACCGTCAAGTCCGACCACGCTTAAGGTGTGCGGACTTC
GGAATGGCTGTTGTCGGCCCTATGGACAGGAGGAAGCGCACCCAACCTAG
CCTAACCTAACAGCCAGCGCGTACAGCAGTAGTCGGCAGGCCACGCGGCG
AGCAGCACCCCGACCCACACAAAAGCTAACAAGAAAATTCTTGAAACGTG
TGTCCAATGGGTCCATTCCCCACCCTGCCACTAAAAAACATGATGGGACC
GTCCACGACAAAGTTTGAAATGGCATGGTACCCCCGCATCAATGGGGCAT
CACCGCCACCATCACCACCCCAACTACACCGCTGGCACTTAACATGTCTA
CTGTCTGCCCGGACGATACGGCCTCCGCATAAGTGCTATCCTGGCGCACA
TCAAGGCTTGTGTAGACCTGGAGACACGCACAGGCGCAAGCGCCGCGGGT
CTCGGGGGTACTATCACACGGCTTGCGAAAACAGAACTCTTCCAAGCCAC
GCGCACTTCGGTGTTTTCATATATTTTCTCAGTAATAAAGGAGCACAACA
CTGATGCTCTTTACTCTCACCTCGGCCGTCAATCAAAAGGCTCAACGTCT
ACGCGAACCATAACACGCTAACCCTGCCTTCGTGCGTAAGTCAAGGTCTG
TACGCACAATGCTGCGAGCATAGGTGCAGCCGAGGCCACTTCTGCACATC
GCTTTTGCTTTTGAGCGTCGCTTCTTCGGCAGCTGCTGATGCCATGCCAT
GGCCTGCCGGGATGAGCACCCACAGCGCCAGCAGTCGGTCGCAGCTCTAG
CGTCCATCCCCTTCAAGCAGACAAAAGCAAAGCCAGCGTTAGATGTGCCG
TGTCCCGTGTCCATTTCATGCTGGTATAGGTGTATGGTGGGGGTCGTTGC
TTGCTGTTTCCTTGTTTCGAGGCCAGTAGTATCGCCAGTCTTACGCTGCG
TATAAAAATTAAAGCCTTCTCCGGCCTAGATTGCGTCTAATGTGATGTTC
AGTCGACGAACCAGCACAAAGTATGTCGAGACATGGGAGCGAGTGCAGCT
GCTGTCTTCAGTCACAAGGCGGGCTACTTGCGATCACGTGTTTCCTGTAT
ACGTTCTCGACCAGGCGCTAGAGCCACAATGCGTTCATATGCATCGAGAA
TGTTTTGTTCGAGCAGTTGTATGCACGATGTCGGTGTCGTCGTATCAGCG
TATGTACCTCTGGCGAAGCTACCTCACGGAGGCAGCGGACCGAAGATTGT
GGCCGTTCTTGACTAATGATTCCCATCCTCGAAACACGCCGTGTGTTCAG
TCTTTCCTTCCCAATAAATGAAGAAGCCGCATGAGATGTTCAAAGTCATC
AGGCGAACATTTAATAGCGAGATGAGATTTGTGATTGTCTAGTCTCGGAA
GCAACAGCCTTGGCCTGATCACGTTTCTAATCGCTGCGCTTGATGGCCGC
TCCGCTCCCTCCATGGCGTTGGACTTGGACCACTACTGCACAAAGCCACG
GTTAGGCGTGGGGCCGCCCAGGCCTATCCGACCCCTCACACCCTCGCCCT
TGAAGAGAAGTGCATAGCGCCCAGCTCCACTCACAATCTGGGAGCGCCGA
TGCACCCACCTTGTCGACAAGTTAGTTATTTTGTTATTTTGCAGATAGAT
CTCGATACACGTACGATGGCCCACATGGGAGGGCGTGATAGTGTTTCAGC
ACATTTTCTGCTGCGCGCGGCAAACTGGCATCGACTCTGCTGTGCCTGAC
AAACCAGGACAACGTTACGGACTAGTGTCGATGTCTGCCTGCACTGCTGT
ACTGTAGTAGGAGAAGTGGTAGATCGTTTCTCGTGTCTTGGTTCGTGGCC
AACTATGACCAGTCACGTTGCCGTGTGAGTGATCATCCAAGTATGCTTAC
TTGTTCAAATCGTCACGTGAACGTATGAAAGCATTGTGTGCGGTGACCCA
GCTGGTTTGCCCTCAGTCCGAACGCGCGAGTTTCTCTGCCCTGTTCGAAA
ATCGCATGCCAATCCGGAACGCAAAATGAACGAGCACAGATGCCGCTATG
GCGTTTTTGGTCATACATGTAGGCGAAATACGATCTGTGGTATTCCCCGT
GGCGGGGGACATAATATACTGTACTATCTTTTGGTGTGCAGATGGTACTC
ACGGCTCCACTGCGTCAGGCTCGACAAACCGGCGCAAGACGCTCCTAGCG
ATACGTGCGATTCCCTCTCATGGCCTCTGGCGGAGGCCAGCCCTGGGTGT
GAGCTCATTATGTTCTTCCTCTCGAGCGCGGCCTCCAAATGTACCCCAAT
TTTTTTCCGTCGAGGGGCCTCGCAAAGGGCGTCCTCGGTCGTCTTGGTCG
GACATGTCGTTTCGACACCTTAACCCTGCGTCTGACATCATCGCCCTTCA
CTGTTAGTTGACGTAAGGTATCATTGTGAACAATTCGGCGTGGTCTCTGC
CTGATCTTTCTGCCTCTTATCCAAGCACCAAGCCGACTTATTCTACGTGA
AAGCCAGTCGACAGCTGCATAGCATATCACATCCAATGCCATCCGCCTGA
GACCGTCTTGTTCTGGCGTAACAAGACGGCATTTTTTATTCTGGGGCTGA
GTTGTTACCGTCAAGATTCGGCCACTTGTTGGATCCGCGACACATGTAGT
CGGATTGGATGCATGTCGGATATCCGCGTTGTGACGATGTGCAGCTCGGT
TATTGGGGGAGGAGGGGGGCACGGTGTCCTCGGATATTGCTTCTCATCCC
CGAGGCACACAAGGTTCAGTGATTCAGTGCTCCACGCTAGTACGGCAAGA
TGCTGCGTACATTGTACTAATCTTCACGCGGACATTTGACAGCATCGCCT
ACGGTGTCCCAAAGCTGGTTTGCTCGCTGTCTGGACTCACAGCTCTGCAC
ACGAAGTAGCTATGCCGGAAGCAACGAGTGACGACAGCAGACGCCCTCTT
TTGTTGTTGGTCATGGACGAATCGCCAACTGTGCTTCGTGCCGGGGGATA
GTGCTGGGTACAGGGTACAGCAGGCAGTTTGAAATCTCCCCCCACCAGCG
ACTTTTCATCGCTCACCATCGAAGCATGTACAGGGTCACAATGTTCTGGG
CCGAACTGCCACGTTGGAAAGCTACAGTAGCGCTTCACACCGCAATCTCA
CACACGTCCATCAGTTTTCGATACAAACACCAGCCGTTCCCGTCAAAAGC
ACACTTCCACGGCGTATTACCACTGCCACCAGGTGGCAAGCGGTGTCCTG
TGTGTCTCTTCCTGGTTTCAAGGAAGTGCTGATGGAGCAAGCGCGTAGTT
TGACCCTGACCCGTGCACAACGCCTGCTGTCCTCCTCACGGTGCCCCCTT
TCTTGCTGCAGGGAGGTCAAGGCGCGCAAGGCCGCCAGCAAGGCCGCCAA
GGGTTCCGCCGTGGCCATGAAGGCCAAGCCTGTCGCGTCCAAGATGAAGG
GCGGCAACACCAAGTGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig12:164559..172325-

>mRNA_P-lacustris_contig12.1497.1 ID=mRNA_P-lacustris_contig12.1497.1|Name=mRNA_P-lacustris_contig12.1497.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=882bp|location=Sequence derived from alignment at P-lacustris_contig12:164559..172325- (Pleurocladia lacustris SAG_25_93)
ATGGTCATCAAGACGGAGGTCTGCGCGTTCTCGGACGTCCGCGTTTACCC
CGGGCACGGTGTGCGCTTCATTCGCAGGGATGGGCAGATGGTCATCAAGA
CGGAGGTCTGCGCGTTCTCGGACGTCCGCGTTTACCCCGGGCACGGTGTG
CGCTTCATTCGCAGGGATGGGCAGCCTATCACCCTCGTCTCAGCCAAGTG
CAAGAGCTTGCTGAACCAGAGGAAGAAGCCGGCTAAGCTCACTTGGACCC
AGCCTATCACCCTCGTCTCAGCCAAGTGCAAGAGCTTGCTGAACCAGAGG
AAGAAGCCGGCTAAGCTCACTTGGACCCAGGCATGGAGGCGCTTGAACAA
GAAGATCAAGGTGGAGGAGGTCGCTCGCCGTCGGCATGGAGGCGCTTGAA
CAAGAAGATCAAGGTGGAGGAGGTCGCTCGCCGTCGCACGCGCAAGACCA
CCAAGCTGAACCGCGCGATCGTTGGCGCCTCGCTGGAGGAGATCAAGAAG
AAGCGCAGCCAGAAGCCGGAGGTCCGCAGCGCACAGCGCGAGGCGGCCGC
CAACACGCGCAAGACCACCAAGCTGAACCGCGCGATCGTTGGCGCCTCGC
TGGAGGAGATCAAGAAGAAGCGCAGCCAGAAGCCGGAGGTCCGCAGCGCA
CAGCGCGAGGCGGCCGCCAAGGAGGTCAAGGCGCGCAAGGCCGCCAGCAA
GGCCGCCAAGGGTTCCGCCGTGGCCATGAAGGCCAAGCCTGTCGCGTCCA
AGATGAAGGGCGGCAACACCAAGTGAGGAGGTCAAGGCGCGCAAGGCCGC
CAGCAAGGCCGCCAAGGGTTCCGCCGTGGCCATGAAGGCCAAGCCTGTCG
CGTCCAAGATGAAGGGCGGCAACACCAAGTGA
back to top