mRNA_P-lacustris_contig12.1492.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig12.1492.1
Unique NamemRNA_P-lacustris_contig12.1492.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 505 bits (1300), Expect = 1.580e-166
Identity = 271/405 (66.91%), Postives = 299/405 (73.83%), Query Frame = 2
Query:  200 GRGWRQPCQDIRL*GASQPREFVVSPRAVALDPRRHRRQGGPRFPGHPGL*GVAFSSMAKEGALRSACAVSGASTAKEED---------VVMLGFDTAESPATRGGGGLMPLTIDPGGDCVPTELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLVVPVKGNAEAGGVSSSSRSV---------APAPSSTRQLRAVGFAKSAASIRTPKASSNGKRSGSFESPMPP 1360
            G  W +P   + +   +  RE +VSP AV                  PG    +  +M KEG LR ACAVSGA+  ++++                  ESPA   G  LMPLTI+PGGDCVPTELEKKRAKLEKY+YECSEVS SFLYVSGEDAAKQQGLV SKGITHIINCAGPQCPNYLEYTGRFNFLRL+FYDHRTEDCAWF+YQAFDFMK AEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDY+EAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTA+HVPLFPNDLVLKIC+HE DRT V+ATLAALDSR CY+LVVP    +     ++ S  V         AP+ SSTRQ+R  GFA  +   RTPKA  N KR  SFESP+PP
Sbjct:   33 GSSWSRPGLSLSIPADTGGREALVSP-AV------------------PGSRRASMHTMPKEGVLRGACAVSGAAVTRQDENAXXXXXXXXXXXXXXXXESPAPPRG--LMPLTIEPGGDCVPTELEKKRAKLEKYKYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATAGSAGRAKATGSMGVIPSRVRGGFAPSCSSTRQIRTGGFALPSPPSRTPKA--NNKRGSSFESPLPP 414          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: D7FJS7_ECTSI (MAP kinase phosphatase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS7_ECTSI)

HSP 1 Score: 451 bits (1160), Expect = 4.030e-154
Identity = 212/227 (93.39%), Postives = 221/227 (97.36%), Query Frame = 2
Query:  500 MPLTIDPGGDCVPTELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLVVP 1180
            MPLTI+PGGDCVPTELEKKRAKLEKYRYECSEVS SFLYVSGEDAAKQQGLV SKGITHIINCAGPQCPNYLEYTGRFNFLRL+FYDHRTEDCAWF+Y+AFDFMK AEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDY+EAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTA+HVPLFPNDLVLKIC+HE DRT V+ATLAALDSR CY+LVVP
Sbjct:    1 MPLTIEPGGDCVPTELEKKRAKLEKYRYECSEVSSSFLYVSGEDAAKQQGLVASKGITHIINCAGPQCPNYLEYTGRFNFLRLNFYDHRTEDCAWFMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAWHVPLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVP 227          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A835YKW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 9.050e-46
Identity = 112/325 (34.46%), Postives = 140/325 (43.08%), Query Frame = 2
Query:  512 IDPGGDCVPTELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGR-------------FNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQR---------------------------------------------------------------------------------GRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLY----------RTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLV 1174
            +D G +  P E  ++R++LE++R+ CSE+   FLYVSGE+ A     +   GITH+INCAGP CPNY E                   +LRLDFYD  +ED AWFLY A DF+ +A +Q                                                                                   RVLVHC QGVSRSC LA AWLM    + Y +AY  VR  R ICAPN GF C+LLEW+RR                     RTA+H PLFP D VLK+C     R  +   +  LD  AC+V+V
Sbjct:   37 MDAGTEANPAE--ERRSRLEEFRFVCSEIVPGFLYVSGEEVACDGTALARVGITHVINCAGPHCPNYHETAAXXXXXXXXXXSAQSIKYLRLDFYDSASEDLAWFLYPALDFIDSAAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGARVLVHCAQGVSRSCALAAAWLMYAHNLSYRDAYASVRAARAICAPNAGFACALLEWERRXXXXXXXXXXXXXXXXXXXXLRTAYHSPLFPGDQVLKLCTDAATRAPLAPRVDLLDPAACFVVV 359          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A7S2V0L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L7_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.380e-45
Identity = 91/219 (41.55%), Postives = 123/219 (56.16%), Query Frame = 2
Query:  560 AKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGR------------FNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLVVP 1180
            AKL  +   CS V    L+VSG+  A  + L+    ITH++NCA   CPNY E                  +L  + +D + ED   FLYQ+FDF+++  E  GRVLVHCV+GVSRSCT+ IA++ML +GV + EAY  VR  R +C+PN  FI +LL WQ+ R QP S P+ YR A H    P+ L+ K+C           T + LD R C++L  P
Sbjct:   60 AKLAHFAEICSSVLPDLLFVSGKKVAANRKLLQENKITHVLNCARCHCPNYFEEKSSSANTTTQGEADGLRYLSFNLFDSKMEDITCFLYQSFDFIESCREAGGRVLVHCVEGVSRSCTVCIAYVMLHRGVKFPEAYEYVRHARNVCSPNAAFIAALLSWQKMRVQPVSHPMAYRVAPHGEHDPHTLLPKLCRKHNGLDPAVPTASILDPRTCFLLWRP 278          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A7S4DF41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF41_HETAK)

HSP 1 Score: 152 bits (383), Expect = 4.510e-40
Identity = 75/158 (47.47%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  542 ELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRR 1015
            E  +K AKL  +   CSEV + +LYV+G+  A  +  +   GITHI+N +   CPN+ E  GRF +L    +D R E+  WF+YQAFDF++ A   RGR LVHCV+GVSRSC LA A+LM  + + Y++A   VR  R + +PN GF C LLEWQ+ R
Sbjct:   20 EEARKSAKLRHFSVLCSEVLE-WLYVAGKAVAGNEEQLIDNGITHILNSSVTHCPNFFEAGGRFAYLGFRLHDSRDEEVVWFMYQAFDFIEGARRARGRCLVHCVEGVSRSCALAAAYLMWRQTLPYDQALQAVRAARGVASPNIGFACQLLEWQKLR 176          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A7J7Q0U8_9CHLO (MAP kinase phosphatase 1 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q0U8_9CHLO)

HSP 1 Score: 148 bits (374), Expect = 2.440e-37
Identity = 89/231 (38.53%), Postives = 122/231 (52.81%), Query Frame = 2
Query:  548 EKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRG--------------------RVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLVVP 1180
            E +R K  KY  +CS+V++  +YVSG   A+ + ++ + GITH++NC G   P Y +   R  +  L   D   ED    LY AFDFM+ A +                       RVLVHC QGVSRS ++ IA+LM   G+ Y E Y  VR  R + +PN GF C L+ W +RRQQ P    +YR A H P  P  LV K    +   ++  A +AALDSR C+V+ +P
Sbjct:   26 ELRRQKFAKYEMQCSQVAEG-VYVSGAAVAQDRAILAAHGITHVVNCVGALYPEYFK-DDRIAYKTLWLADTPHEDITCILYDAFDFMEEARKGSAXXXXXXXXXXXXXXXXXXXXRVLVHCSQGVSRSTSIVIAYLMWRTGLTYQEVYQAVRALRGVTSPNVGFTCQLINWAKRRQQQPDGARVYRIAPHCPDNPTYLVAKPVGPKPGCSH--ADVAALDSRGCFVVHLP 252          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A7J7Q184_9CHLO (Protein-tyrosine phosphatase-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q184_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 5.560e-36
Identity = 90/226 (39.82%), Postives = 122/226 (53.98%), Query Frame = 2
Query:  548 EKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEE---------------QRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLVVP 1180
            E +R K  KY  +CS+V++  +YVSG   A+ + ++ + GITH++NC G   P Y +   R  +  L   D   ED    LY AFDFM+ A +                  RVLVHC QGVSRS ++AIA+LM   G  Y E Y  VR  R + +PN GF C L+ W +RRQQ P    +YR A H P  P  LV K    +   ++  A +AALDSR C+V+ +P
Sbjct:   97 ELRRQKFAKYEMQCSQVAEG-VYVSGAAVAQDRAILAAHGITHVVNCVGALYPEYFK-DDRIAYKTLWLADTPHEDITCILYDAFDFMEEARKGSTAXXXXXXXXXXXXXXRVLVHCSQGVSRSTSIAIAYLMWRTGGTYQEVYQAVRALRGVTSPNVGFTCQLINWAKRRQQQPDGARVYRIAPHCPDNPTYLVAKPVGPKPGCSH--ADVAALDSRGCFVVHLP 318          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A444ZTY0_ARAHY (Uncharacterized protein n=6 Tax=Arachis TaxID=3817 RepID=A0A444ZTY0_ARAHY)

HSP 1 Score: 150 bits (379), Expect = 1.460e-35
Identity = 92/237 (38.82%), Postives = 124/237 (52.32%), Query Frame = 2
Query:  494 GLMPLTIDPGGDCV----PTELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSP----LLYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLVVP 1180
            G+ PL   P G        +E + KR KL  Y  ECS +++  +Y+  +  AK   L+   GITH++NC G  CP Y +    +  L L   D  TED    LY  FD+ +   EQ GRVLVHC QGVSRS +L IA+LM  +G  + +A+  V+  R +  PN GF C LL+ Q+R    P+SP     +YR A H P  P  LV KI  H   +        ALDSR  +++ VP
Sbjct:   84 GVWPLPETPRGSVSVVGSSSEFQLKREKLAFYDKECSRIAEH-VYLGSDTVAKNHDLLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQ--DSPTEDITSILYDVFDYFEEVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHATPASPNSILRMYRMAPHSPYDPLHLVPKIVNHPSAQ--------ALDSRGAFIVHVP 309          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: D8UBV1_VOLCA (MAP kinase phosphatase 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UBV1_VOLCA)

HSP 1 Score: 142 bits (357), Expect = 6.600e-35
Identity = 83/221 (37.56%), Postives = 113/221 (51.13%), Query Frame = 2
Query:  518 PGGDCVPTELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQPPSSPLLYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVLVVP 1180
            P  D  P+E + +R K   +   CSEVS   L++SG+  AK +  +   G+TH++NC G  C  Y +    +  L L   D   ED    LY   D++ +A    GR+LVHC QGVSRS TL IA++M   G  Y+E +  V+  R +  PN GF C LL+WQ+R     S   +YR A H    PN LV K+      + Y   T   LD R  +VL  P
Sbjct:   31 PVEDAAPSETQLRRQKYLFFEKHCSEVSAG-LFLSGDYVAKNRETLRQAGVTHVLNCVGFICKEYFKDELTYKTLYLQ--DTPAEDILCVLYDCLDYIDSALHSGGRILVHCSQGVSRSATLVIAYIMWRSGKPYDEVFAAVKAVRGVANPNIGFTCQLLQWQKRAASAKSRMRMYRIASHCVHAPNYLVPKLIT--PPKQYPNNTHRDLDPRGAFVLQTP 246          
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Match: A0A7R9V781_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V781_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 1.150e-34
Identity = 81/215 (37.67%), Postives = 121/215 (56.28%), Query Frame = 2
Query:  539 TELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGITHIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAPNTGFICSLLEWQRRRQQP---PSSPL-LYRTAFHVPLFPNDLVLKICLHEEDRTYVRATLAALDSRACYVL 1171
            +E +++RA+L  +  +CS V    L+VSGE  A+ + L+   GITH++NC G  CP   ++     +     +D+  ED    L++  +F+ +A    G VLVHC QGVSRS TLAIA++M   G  +++A  +V++ R I +PN GF C LL+WQ+RR  P   PSS L L R A H P  P+ L+ +        T   AT   LD R  +++
Sbjct:   70 SETQQRRARLAFFERQCSRVLPQGLFVSGETVARDRQLLAGSGITHVLNCVGFTCPE--DFKEELTYKTFYLHDNPGEDLLSVLFEGLEFIDSALRAGGNVLVHCSQGVSRSATLAIAYIMWKFGRSFDQAMAQVKEARGIASPNIGFTCQLLQWQKRRSAPFAPPSSRLRLLRVAPHCPQTPSLLLARPVAPPPPSTSPHATWRQLDRRGAFLV 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig12.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2L8_9PHAE1.580e-16666.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJS7_ECTSI4.030e-15493.39MAP kinase phosphatase 1 n=1 Tax=Ectocarpus silicu... [more]
A0A835YKW6_9STRA9.050e-4634.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V0L7_9STRA1.380e-4541.55Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4DF41_HETAK4.510e-4047.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7J7Q0U8_9CHLO2.440e-3738.53MAP kinase phosphatase 1 n=1 Tax=Scenedesmus sp. N... [more]
A0A7J7Q184_9CHLO5.560e-3639.82Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A444ZTY0_ARAHY1.460e-3538.82Uncharacterized protein n=6 Tax=Arachis TaxID=3817... [more]
D8UBV1_VOLCA6.600e-3537.56MAP kinase phosphatase 1 n=1 Tax=Volvox carteri f.... [more]
A0A7R9V781_9CHLO1.150e-3437.67Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig12contigP-lacustris_contig12:98596..105606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.4
Seed ortholog evalue1e-124
Seed eggNOG ortholog2880.D7FJS7
KEGG koko:K04459,ko:K21278
KEGG Pathwayko04010,ko04726,ko05418,map04010,map04726,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-06_010330.1
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons5
Model size1486
Cds size1116
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig12.1492.1prot_P-lacustris_contig12.1492.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig12 98966..105606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.7707384-UTR-P-lacustris_contig12:98595..989651622815513.7707384-UTR-P-lacustris_contig12:98595..98965Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 98596..98965 +
1693493583.1592627-UTR-P-lacustris_contig12:98595..989651693493583.1592627-UTR-P-lacustris_contig12:98595..98965Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 98596..98965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.7838402-CDS-P-lacustris_contig12:98965..991901622815513.7838402-CDS-P-lacustris_contig12:98965..99190Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 98966..99190 +
1693493583.1773462-CDS-P-lacustris_contig12:98965..991901693493583.1773462-CDS-P-lacustris_contig12:98965..99190Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 98966..99190 +
1622815513.7977264-CDS-P-lacustris_contig12:103200..1033261622815513.7977264-CDS-P-lacustris_contig12:103200..103326Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 103201..103326 +
1693493583.1853068-CDS-P-lacustris_contig12:103200..1033261693493583.1853068-CDS-P-lacustris_contig12:103200..103326Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 103201..103326 +
1622815513.8100777-CDS-P-lacustris_contig12:103773..1039221622815513.8100777-CDS-P-lacustris_contig12:103773..103922Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 103774..103922 +
1693493583.1943276-CDS-P-lacustris_contig12:103773..1039221693493583.1943276-CDS-P-lacustris_contig12:103773..103922Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 103774..103922 +
1622815513.821386-CDS-P-lacustris_contig12:104506..1046571622815513.821386-CDS-P-lacustris_contig12:104506..104657Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 104507..104657 +
1693493583.2053723-CDS-P-lacustris_contig12:104506..1046571693493583.2053723-CDS-P-lacustris_contig12:104506..104657Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 104507..104657 +
1622815513.835344-CDS-P-lacustris_contig12:105141..1056061622815513.835344-CDS-P-lacustris_contig12:105141..105606Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 105142..105606 +
1693493583.216956-CDS-P-lacustris_contig12:105141..1056061693493583.216956-CDS-P-lacustris_contig12:105141..105606Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 105142..105606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig12.1492.1

>prot_P-lacustris_contig12.1492.1 ID=prot_P-lacustris_contig12.1492.1|Name=mRNA_P-lacustris_contig12.1492.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=372bp
MAKEGALRSACAVSGASTAKEEDVVMLGFDTAESPATRGGGGLMPLTIDP
GGDCVPTELEKKRAKLEKYRYECSEVSKSFLYVSGEDAAKQQGLVGSKGI
THIINCAGPQCPNYLEYTGRFNFLRLDFYDHRTEDCAWFLYQAFDFMKTA
EEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYNEAYLRVRQGRPICAP
NTGFICSLLEWQRRRQQPPSSPLLYRTAFHVPLFPNDLVLKICLHEEDRT
YVRATLAALDSRACYVLVVPVKGNAEAGGVSSSSRSVAPAPSSTRQLRAV
GFAKSAASIRTPKASSNGKRSGSFESPMPPSSLSSARPTTLPLTTRAASR
LSAPSPAAARARAASAAAVIAN
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mRNA from alignment at P-lacustris_contig12:98596..105606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig12.1492.1 ID=mRNA_P-lacustris_contig12.1492.1|Name=mRNA_P-lacustris_contig12.1492.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7011bp|location=Sequence derived from alignment at P-lacustris_contig12:98596..105606+ (Pleurocladia lacustris SAG_25_93)
CTTGTAGTATGACTGCTACATCCCCTTTACCCCTACGTCCTACAATTACA ACCCACAAGCAGGTGACGGACCAGGCGTTGGTTTGGTTAGATCTAGGTCG CGCGGCGGGGGAGGGCGAGCTAGAGCCTGCTGCAGAGATCGACCGGGATC ACGGCCGCATCAGCATGGATAACGATTTTGTCGATGTTTTCCCGTCGGCG GGAGGGGTTGGCGACAGCCCTGTCAAGACATCCGTTTGTGAGGAGCATCT CAACCCAGGGAGTTCGTGGTCTCGCCCCGGGCTGTCGCTCTCGATCCCCG CCGACACAGGAGGCAGGGAGGCCCTCGTTTCCCCGGCCATCCCGGGCTCT AGGGGGTGGCTTTCTCTTCGATGGCGAAGGAGGGTGCGTTGCGGAGCGCC TGCGCGGTATCGGGAGCGAGCACAGCGAAGGAAGAGGATGTCGTGATGCT CGGGTTTGACACAGCAGAGAGTCCAGCAACACGAGGAGGGGGAGGGCTTA TGCCGTTGACCATTGATCCCGGGGGAGATTGCGTTCCCACGGAGCTGGAG AAAAAGAGGGCTAAGTTGGAGAAGTACAGATACGAGTGCAGCGAGGTGGG TTTACGGTGTGTTACGGTGTGTCTTGTTTGTCCGTCAAATCAAAAAGTGG AGTTAGTCTGGATTGATCTCATCACCTATATCGAGCTTGGATTGCGGTTG TATCCGTGAGCCTGGAGAGGCTTGGCGTGCGTGTTTGGCGTGGGAAGTTC TTGCACAGAAAGCGTCAGGAAGGTGCGGTGTGTGGCGCAAGCTAGGGTCG AGAAGAGCAAACGCACGTGTTGCTGTCGACGGACAACTTGCCATTGGGAC TGTGCAGGTCACTAGCCTTCATTTTTTTTGTGCCACTTTTGATCTACCCC GTGCCCCCAACAGACGACGAGCCACATCAAATTTAGCGGCAAGTGTCCGT TACGCCTCTCTTTTCTCTTCGCTCTCGCCTCTTTCAAAAACACAGAGCAT TGATTCGAGTATTCCGTGTCAGTCGGTGCCAGAAATCCCCGGGGTTCGTG AAGTTGGATACAGAGAGAGCGGAATGGCTGTCGCAACAAAAGCTCGTACG AGCTGATGTTCCGATAATTTGATATTTTTCCGAGACACATGCGCGCTTAC CTGGCTGGTAAGGTTCCTCGGGGTAGGTCCGAAGCCCAGCTTTTCAGCCG TTGGGGGCCATCTTCTCCTGTGCGCCCATTCGTTTATCGTAGGGCTGGTT GAGTCCTTGAGTCAGGGCGGTTCTCAGACCACACGTAACATCATCAAACG CTACTACCTTGTACCCTAGCTAAGTGTGGTGGCTCCCGGCTCCCGGCCAC GATGTTTACCCACTGATGGTCCTGAGGATCGATGCTGACAACCGTCTGTA TCAAACGCATCGGCAACATAACCTAGCTAAGGGTGGTAGAGTGGCTACCT GGCTCCCGGCCATCGATGTTTGCCCGCTGATGGTCTAAAGGATCGATGAC AACCATCAGGAAGTAGCTGAAGATCATTCGGTTTTACAAGGGCCGTGCGC GACTGGCGGAGGCGCCTCCCGCTCACTCAGCGCAAATTGAAGAGTATTTT ACGTAGGAGTGGAAGAGACGGAAGGCGCTCGGACCAGTCAATGCTGGAAA GTAGAACAGAAAAGGAATATAAAAGTTAGTTTCCGATGCAAGTCAAGTTT AACAAGATCTCGATGAAGTTTGAAAAAAAATGCAGAGCAGCAGAGTTAGT TGCCAGCTTGCCACGCCCGGTTTCGTAGAGTTGGCGTCACCTATTTATTG TTGCTAGAATTTGGTCAGGGGTCTAAGAAGTATGCAGGCCTGTAGCATGT CCGTCAGTCCGCACCGGCTGGCTGCTTCTCAACTAATACATTTAGCCGTT TCTTGTGGGCACAGCAGCGATCTGGTGCTGGTGTAGCAGAATCGCCAGCT GTGGCGCGCTCACCCACTAAACGCTGGAGAGTCAGACAGAGCAGATAGCT GCTGACGACGGGCCAGCGAGGGGCTGTGTAGGTATCTCCAAGCGTACTTC AGGCAGAGTGGTGCTGTCAGGAGCACTGTATGGTGCTGTTAGAAGTAGTG TGCGACTCTACCGCGGCATTGTTGTGGTGGGGTGTTGTTGAGCGACTGAC TACACGCGCTCTCCACTCGCCGCGTTCATGCTCAACATACAGCAAGCAAA ACCTGAACTGCTGTGACGACTAGCGACACAGAGGGCCTGTGGAGTATCTC CAAGCGTACGCTATACATGCTGGGCACGGTGGTGATGTGAGCAGTACCCT GACTGCTGTGTAGTTCAACAGCAGCAGTGGGGCTTCCTCTGAGCAGCGAG CTGGTGTCGTCGTTCGCTGAAAACCAAGCTTGTAGGATGTCTGCCCTCCG CTTGGCACACACGTTTGGCGACGTGGCTCGCCCATTTCGGCACGGGTTAC AGCGAAACAAGCAGCAATTTTCTCGAGCTAATTTTTCTCGTCAGTGCAAG CCCTTGGTTGCGCCGATCGATGCCGAGTTCGTTGCGTTGTGAATCAAAGC GTGCTTCTATTTTTTGCGTACATCGAAACATTATTGGTCAGGCTAAGAAA CCAATACACGTTCGTCAAGTCATAACTTTTCAAGGAACAAAAATTGAACG GCGTTCGGCATATCCCCTGAATCGTCCAATCGCAGCGGATGAGCACGTTT TTACTGCCAGTTGATTGGGCACGTTTTTCCCAAAGCGAAGGAACCTACTA CCTTACATTCTAGAGTCGTGACGAAAAAAGAAACGAAACGCTTTTCCATG CGGCGAAACTTTTTTTTCGCCCAACAGCACACACACACACACACACACAC TGACGTCTTTTCATTGGTCAGCCAGTTAGCGCGGTCGATGCTAATTAATG AAACACACACACACACACACACACACACACACGCGATTACAATTCGCGCA AAGCCAGCTATGCAATTTTCGACTTTTTTTTTTTTTTGCTGACATTTAGT GTTTGAGGTCGTTGCGGGCGTGTGTTTGCGGTCGTGCGCTTCACATGAAC CGTTTTCTCACCCGGGTTGCACCTAGCACAAACATTGCGTTTTTTTTTCA TATGTCGCATCCGTCGCGATATTGCGGAGCCCCATAGGCACGGATTGCCA CCGCGAGGTGCAGTTATTCTTCAACAGCTTATGCTGTAGTTGCGATCCGA AATTCGGGAGGGCAGCTCAGAAATCTTTGAGGAATAGCCTACACGTCGGC ATCATCGCTAGCCCGATCGGATGAAAACTGCTTCATCTTTGGGGGTGTGG TATCTTCATCTCTACCGGAAAACGAGCAGGCGTCAGCTGCCTGGGGAACT TGAGCTGTAGTTGCGATCCAAAATTCGGGAGGGCAAGGATGACTTCTCTG ATGGTATACCTAGGCTCTCTCCAAGCGCTGGTCGATTTAGTGCACTCCCA GGTTGGTGGACAAGTGCATGAAGATGGCCTCTCGTGCCGCTTTGCACTTG AATTTTGGGTAAGGGGGCAAAAAAAAagAAAAAAAGAGGGGGGTCGTAGG TTCTTTTGCGACATTTTTTTTTTGTTTTGTGCTAGGTGCAACCCTGGTGT TCTGTGTCCCCCTTCATCATGCACGATGGGTGTGTCCACGTATATCCTTT GTTGGGCCGCTAGCACAATGCGGCTCTCGCTGGCACGCGGCTCTCTTCGC CCGTTTCTGCGGTCTGTGAGTTTTTTAATTTGTAAATGTTTCTGCCCCTG CACCTTGGTCCTGGGGCCGAAAAGCAATTCTGGATTTCCCGTGCGGTTTT TTCGATTCAGAACCTGAAATTTCGACACGTGTTTCATGCCAATGAAGCAA ACACACACTCGATTGCTCCCATTAATTTTTTTCTATTTTTTCCGTCACTT CGTCTCGGAACAAAGGATCCCTCAAACACAAATATCAGGCTAGCGATCGT GTTTGTGTCTGTTTCATTGGCATGAAGCACGTGCCAGAATTTCAGGTTCT GAATAAAATAAAATAAATCGCACGGGAAATCCGTGCCACCCAAGCTGGTC TCGTCTTAGCCCGACCAGCTTGTAGACGTCTTTTTTATGGGTAGTGGGTA GTGTCCACAAGGCTAGGCAAGTCGATCATATCCGGCGTTGGGAAGAATAC CCACCGCTACATCGGTGCCCAAATTCCTGCCATCACCTGCAGTATTGTAG TCTCCGGCATGCCTTCGTAGGCTTCCTTCATTGTCCGATCCATCCCCCCA CGAAAAACAGCAGTTGCAAGAGAAACTCTTTTGAATTTGCGCACCACTCC CATGTTCTACCGCACGGTGAGCCCACGTTCGATCAAACATACGATTCGTC CCACATGGCCGCCACATGCTTTGCCTAACTCAGGTGCCACGTTTGCCATG TGGTTCGCGTTGAGAGTTTATTCCACGGGGTTGGTGGTTCCAGATAATCT CTCCCGTGCTAGCTGGCGCGTTTGCCACGTCACGACTCCCTGAACTACTT GGGGATTCGCGATCGCCTGAAACGTCACGCTAACAAGCACGGCACTTTGA CCCTTTCTTTCTTTTTGTTTCGTTTTTTTTTTACCCTGTCCCTGAAAAAA AGCAGGTGTCGAAGTCGTTCTTGTACGTTTCGGGCGAAGACGCGGCGAAA CAGCAGGGTTTGGTGGGCAGCAAAGGCATTACGCACATCATCAACTGTGC CGGTCCGCAGTGCCCAAACTACCTGGAATATGTGAGAGCGTTTTCAGCCA ACGGTTATTTCAGGCTCCGTCAACTCGTCAGTAATTTGCTGCTTTTGCCT GCTTTCGAGAGGCTGTCCCATGGCTTTGCACAGATGAGGCGTCTGGGTTT CATGAGAAGGCAGCACTGCCACCCTCGTGTTTCCTACCTGATCCGAAGAG CCATCGTGCGCCGCCCCGTCTTTCTGCTAGAGACCCAAGGGTCGATGGTA TTGCACTACCTTTTTTTTTTCCTGCATTTTTTTTTTCAGCAGGAACAAAG GGGGGAAGGAAGCCCATTCGCCACCTCTTTCCTCGCCCCCCCAGGTCTGG AACGCCTGACTGACTTGATCGTAGCCATGATGTTGGCATCGTGTTGTAAC GGCTTGTTTTTTTCCTCTGTCCGACATCGAAACCCGATCTCCGAACTCTG TCTTGCCTTGTTTTTTCGCTTCGAACAGACCGGGCGGTTCAACTTCTTGC GGCTTGACTTCTACGACCACCGAACGGAGGATTGTGCCTGGTTTTTGTAC CAAGCCTTTGACTTCATGAAGACCGCAGAGGAGCAGCGAGGAAGGGTGCT GGTACACTGCGTGCAAGGCGTGTCCCGGTGAGGAATTGTCTCGTTATTTG GTTCTGGGTCTCGAGAAAAATGAGAGGATGGGGGGTAGGAGGAGAGGTGG ATGTACCCGTTATGAGTAGAAGCAGCAACGACGATTGCGTTGGCAACGAC GCCTGCGTTGCAACCATATCCGTTGGCACCACGTATCGTACTTGCGGCGT TACACACACACACACCCCAACTCCTTGGGACTGGTTTCCTCCTTCGATTG CTCCAGAGGGAGGTAAAGAGGACTTGAATGCCAAAATACGTGTCTTGTGG ACAGTTTAGGATGTCTCCGTATAGATGCCACCCCTCTAACGACCTTCTCC GGGGTGACTGCCAATGGCCCAAGTCCATAGTCTCGCCCGTTATATACCGT GATACGCTCGCGTTTGTTTCTATAAAACTAGATACCGTACCGTATCGCCT CCCCCTCCTTTTGTAGAAATGGGGCAGTCGAGTGCGACAATCGGGCGGTG GGCAGGGCGAGCTAGCTGTGCGTCGTCCAAACGGGGCTGCGGCACGTAGG TTGCCATTGTGACTGTGCTGTCAAATTAAAATCAACCTCTTGTGCGTCCC CTTGTGACCAGGTCGTGCACGCTGGCTATTGCGTGGCTGATGCTGACGAA GGGGGTAGACTACAACGAGGCTTACCTGCGGGTGCGGCAAGGCAGACCCA TCTGCGCGCCGAACACCGGCTTCATCTGCAGTCTCTTGGAGTGGCAACGT AGACGGCAGCAGGTGTGATGTAGTTTTGCTTGGCTCTTTGTGTTTTTGTC AGGGGGAAGTTTTGGGACAGGAGCGGTTGAGCGGTTGAGGTGGCTGTACG TCAAGGATAAAGTGTTGGCTTGTGGGAGCGTTTGGTCGCCAGTAAGTCTC GAGCTGTGTCTAGTTGATCCACAAAAATCCCGTCACGTTGAGCTGATTTT CTCCTTATGAACAGCGTTGTTGAAGTCCGCTCTTCACACACGAACAGATT TGTCATTTTCGTCGTCGCAACGAGCACGAGAGCACGACTTGAACGTACCT TTCCTCGACAACCCAAGACGTATGCATATGCATCCCTACTCCGGTTTCCC CCTCTCTCGATGGGCCCTTTCTCTCACGATTACACCCACCCTCCATTTTC CCACACGTATGATGTCGTATGATGTCGTATGATATCGCCCACCCATCTTT TCTTGTTTTCTTTGCCTTTTCTCTCATGCAATCCTTCTGTGGACAGCCTC CGTCGTCACCGCTGCTGTACCGGACGGCCTTCCACGTACCCCTCTTCCCG AACGATCTTGTGCTCAAGATTTGCCTCCACGAAGAAGACCGAACGTACGT CAGGGCGACCCTGGCGGCTCTCGACTCCCGCGCCTGCTACGTCCTCGTTG TCCCCGTGAAGGGAAACGCGGAAGCGGGGGGGGTATCCTCGAGTAGCAGG AGCGTCGCCCCGGCCCCCTCCTCGACGAGACAGCTGCGGGCCGTCGGCTT CGCGAAGTCGGCTGCCTCAATCCGAACGCCGAAGGCTAGCAGCAACGGTA AACGCAGCGGTAGCTTCGAGTCGCCGATGCCACCGTCATCGTTGTCGTCG GCTCGACCAACGACGCTGCCGCTGACCACGAGGGCCGCCAGCCGGCTGTC GGCGCCATCGCCGGCGGCCGCAAGGGCCCGGGCGGCGTCGGCCGCCGCCG TCATCGCGAAC
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Coding sequence (CDS) from alignment at P-lacustris_contig12:98596..105606+

>mRNA_P-lacustris_contig12.1492.1 ID=mRNA_P-lacustris_contig12.1492.1|Name=mRNA_P-lacustris_contig12.1492.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2232bp|location=Sequence derived from alignment at P-lacustris_contig12:98596..105606+ (Pleurocladia lacustris SAG_25_93)
ATGGCGAAGGAGGGTGCGTTGCGGAGCGCCTGCGCGGTATCGGGAGCGAG
CACAGCGAAGGAAGAGGATGTCGTGATGCTCGGGTTTGACACAGCAGAGA
GTCCAGCAACACGAGGAGGGGGAGGGCTTATGCCGTTGACCATTGATCCC
GGGGGAGATTGCGTTCCCACGGAGCTGGAGAAAAAGAGGGCTAAGTTGGA
GAAGTACAGATACGAGTGCAGCGAGATGGCGAAGGAGGGTGCGTTGCGGA
GCGCCTGCGCGGTATCGGGAGCGAGCACAGCGAAGGAAGAGGATGTCGTG
ATGCTCGGGTTTGACACAGCAGAGAGTCCAGCAACACGAGGAGGGGGAGG
GCTTATGCCGTTGACCATTGATCCCGGGGGAGATTGCGTTCCCACGGAGC
TGGAGAAAAAGAGGGCTAAGTTGGAGAAGTACAGATACGAGTGCAGCGAG
GTGTCGAAGTCGTTCTTGTACGTTTCGGGCGAAGACGCGGCGAAACAGCA
GGGTTTGGTGGGCAGCAAAGGCATTACGCACATCATCAACTGTGCCGGTC
CGCAGTGCCCAAACTACCTGGAATATGTGTCGAAGTCGTTCTTGTACGTT
TCGGGCGAAGACGCGGCGAAACAGCAGGGTTTGGTGGGCAGCAAAGGCAT
TACGCACATCATCAACTGTGCCGGTCCGCAGTGCCCAAACTACCTGGAAT
ATACCGGGCGGTTCAACTTCTTGCGGCTTGACTTCTACGACCACCGAACG
GAGGATTGTGCCTGGTTTTTGTACCAAGCCTTTGACTTCATGAAGACCGC
AGAGGAGCAGCGAGGAAGGGTGCTGGTACACTGCGTGCAAGGCGTGTCCC
GACCGGGCGGTTCAACTTCTTGCGGCTTGACTTCTACGACCACCGAACGG
AGGATTGTGCCTGGTTTTTGTACCAAGCCTTTGACTTCATGAAGACCGCA
GAGGAGCAGCGAGGAAGGGTGCTGGTACACTGCGTGCAAGGCGTGTCCCG
GTCGTGCACGCTGGCTATTGCGTGGCTGATGCTGACGAAGGGGGTAGACT
ACAACGAGGCTTACCTGCGGGTGCGGCAAGGCAGACCCATCTGCGCGCCG
AACACCGGCTTCATCTGCAGTCTCTTGGAGTGGCAACGTAGACGGCAGCA
GGTCGTGCACGCTGGCTATTGCGTGGCTGATGCTGACGAAGGGGGTAGAC
TACAACGAGGCTTACCTGCGGGTGCGGCAAGGCAGACCCATCTGCGCGCC
GAACACCGGCTTCATCTGCAGTCTCTTGGAGTGGCAACGTAGACGGCAGC
AGCCTCCGTCGTCACCGCTGCTGTACCGGACGGCCTTCCACGTACCCCTC
TTCCCGAACGATCTTGTGCTCAAGATTTGCCTCCACGAAGAAGACCGAAC
GTACGTCAGGGCGACCCTGGCGGCTCTCGACTCCCGCGCCTGCTACGTCC
TCGTTGTCCCCGTGAAGGGAAACGCGGAAGCGGGGGGGGTATCCTCGAGT
AGCAGGAGCGTCGCCCCGGCCCCCTCCTCGACGAGACAGCTGCGGGCCGT
CGGCTTCGCGAAGTCGGCTGCCTCAATCCGAACGCCGAAGGCTAGCAGCA
ACGGTAAACGCAGCGGTAGCTTCGAGTCGCCGATGCCACCGTCATCGTTG
TCGTCGGCTCGACCAACGACGCTGCCGCTGACCACGAGGGCCGCCAGCCG
GCTGTCGGCGCCATCGCCGGCGGCCGCAAGGGCCCGGGCGGCGTCGGCCG
CCGCCGTCATCGCGAACCCTCCGTCGTCACCGCTGCTGTACCGGACGGCC
TTCCACGTACCCCTCTTCCCGAACGATCTTGTGCTCAAGATTTGCCTCCA
CGAAGAAGACCGAACGTACGTCAGGGCGACCCTGGCGGCTCTCGACTCCC
GCGCCTGCTACGTCCTCGTTGTCCCCGTGAAGGGAAACGCGGAAGCGGGG
GGGGTATCCTCGAGTAGCAGGAGCGTCGCCCCGGCCCCCTCCTCGACGAG
ACAGCTGCGGGCCGTCGGCTTCGCGAAGTCGGCTGCCTCAATCCGAACGC
CGAAGGCTAGCAGCAACGGTAAACGCAGCGGTAGCTTCGAGTCGCCGATG
CCACCGTCATCGTTGTCGTCGGCTCGACCAACGACGCTGCCGCTGACCAC
GAGGGCCGCCAGCCGGCTGTCGGCGCCATCGCCGGCGGCCGCAAGGGCCC
GGGCGGCGTCGGCCGCCGCCGTCATCGCGAAC
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