mRNA_P-lacustris_contig12.1488.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig12.1488.1
Unique NamemRNA_P-lacustris_contig12.1488.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig12.1488.1 vs. uniprot
Match: D7FJS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.260e-6
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 3 
Query:  432 APQEITPETRYDQLPEVVRKQIDELAKEIKR*GDGSVRGVQQDI 563
            APQ ITPETRYDQLPEVVRKQID+LA+EIKR      RGV  ++
Sbjct:  161 APQGITPETRYDQLPEVVRKQIDQLAEEIKR-----QRGVADEV 199
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BLAST of mRNA_P-lacustris_contig12.1488.1 vs. uniprot
Match: A0A6H5KL87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL87_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.260e-6
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 3 
Query:  432 APQEITPETRYDQLPEVVRKQIDELAKEIKR 524
            APQ ITPETRYDQLPE VRKQID+LA+EIKR
Sbjct:  162 APQGITPETRYDQLPEAVRKQIDQLAEEIKR 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig12.1488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJS3_ECTSI2.260e-670.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL87_9PHAE5.260e-687.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig12contigP-lacustris_contig12:71568..74380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size789
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig12.1488.1prot_P-lacustris_contig12.1488.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig12 71903..74355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.7641-UTR-P-lacustris_contig12:71567..719021622815511.7641-UTR-P-lacustris_contig12:71567..71902Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 71568..71902 -
1693493582.0870597-UTR-P-lacustris_contig12:71567..719021693493582.0870597-UTR-P-lacustris_contig12:71567..71902Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 71568..71902 -
1622815511.8045352-UTR-P-lacustris_contig12:74355..743801622815511.8045352-UTR-P-lacustris_contig12:74355..74380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 74356..74380 -
1693493582.1222696-UTR-P-lacustris_contig12:74355..743801693493582.1222696-UTR-P-lacustris_contig12:74355..74380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 74356..74380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.7743092-CDS-P-lacustris_contig12:71902..722271622815511.7743092-CDS-P-lacustris_contig12:71902..72227Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 71903..72227 -
1693493582.101781-CDS-P-lacustris_contig12:71902..722271693493582.101781-CDS-P-lacustris_contig12:71902..72227Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 71903..72227 -
1622815511.7848916-CDS-P-lacustris_contig12:74251..743551622815511.7848916-CDS-P-lacustris_contig12:74251..74355Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 74252..74355 -
1693493582.1110058-CDS-P-lacustris_contig12:74251..743551693493582.1110058-CDS-P-lacustris_contig12:74251..74355Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 74252..74355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig12.1488.1

>prot_P-lacustris_contig12.1488.1 ID=prot_P-lacustris_contig12.1488.1|Name=mRNA_P-lacustris_contig12.1488.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=143bp
MSLFGAPAAAPAAGGFTFGGSSTSAPAAAPAGGFGFGTAPAPAAATTNLF
GAPAPSRRYYSPGRHFRRYSSTRPLGGLRYHIRCHHRCPRPCPDGLRRCI
RDRRCSRPRFDGIRVRHPGSGRTIAGVWSANSGGDCTAGDHS*
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mRNA from alignment at P-lacustris_contig12:71568..74380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig12.1488.1 ID=mRNA_P-lacustris_contig12.1488.1|Name=mRNA_P-lacustris_contig12.1488.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2813bp|location=Sequence derived from alignment at P-lacustris_contig12:71568..74380- (Pleurocladia lacustris SAG_25_93)
CACGCCACTACGCTGCTGGGCGGCCATGAGTCTTTTCGGTGCTCCAGCTG
CTGCACCCGCAGCGGGAGGTTTTACCTTCGGAGGATCGTCCACTTCTGCG
CCCGCCGCCGCTCCTGCAGGAGGATTCGGGTGAGATTGTAATGTTTGGAA
AGAGAGGTTGCTGCTACGGCAGTAGTAGCTGTCGCCTTTGACAGCAGGCA
CAGCAGCGTTCACGCGCAAGGCGCGAGACAGGGATCGGAAGAGACGCATC
TAGCGGGGAAGGATAAATTTTGCTACGTGTGCCACTCCATATTTATTTGC
GTCCTATTCGTGCGCGGTTATCTGCTGTGGTGTGCCGCACCAGGTGCCTC
GTGTGCCGAGGGGATGGTGTTCCTGTCAAACGGCCTGCAAAGAACGGCGG
CAATACTATCTCGGCTGTAACCTTCTCGCGATCATGCCAGCCGTAGATCG
GATGCACGCAGGCGTAGAAGGCTGAGAATAATAGTTGTCCACAATCGGCA
AATCGTTTGAGGTCTCATTGGGATAGGCGTGTTGGCGGTTGCATGTGTGT
CGTAATCGCTATGGATTTTGGCCGGGCACACCATTCTCTACAGATTACCA
GCAGGACATCGTGTAGACGACGTGCATACGAAAGCGAGAGGACACACCAT
GAAATGATGAGGCTGTTGGTCCCGCTACTCACGCCGATGCGCGGAGGGGG
TTGTCTATGGTACGTCAACTTTTAATTGGTCAACCCGTTAGCGCCGTCGA
CACTTATGCGGGCAAAAAGGCACACCACCGTAAAGGATCGATCTATTGCT
GCTACCTTGTACAGAGTACCACATTCTGCGACTCTTTGGTCTATGCGTGT
AACCACCACTCCCTGCTGGTTATGTAGGTTAATATATCTACTGCTGTAGT
TGCCGCAGAGCACTTTGGTTTGATACAAAACCGTGGCGGCAGGAGGAGCA
CGCTGTTCATTCCTGAGCAAAGGCTCGGAAGAAAGGTGTGCCCCGTAACT
TGCTACAGGTACCAACCAGCCTTATTAACCGCCTAACGCGACATCTATTC
TCCACTATCTACGAGTTGAGCGATTCTGCCACAAGTTCGAAGATGCACTT
TCCCCGCCGTCGACAAACCTCAACCATTCAACATACTCGGAAGGAGGATA
GGGTAGGGTACGGTAGCAAAGGGTTTTTCGTTCGAGGCGACAGCGCGCTC
GTCGTTTTGTTGCTGTTTGTCTGTTCGACCTATCCATTACCTTTTACCTC
CTCTCCTCTCCGTTAGTTATTTTGGAAGGAAACGAAACGAATGTCTGTGG
TCAGCAAGCTATGATGACTCAAGATAAGGTATGCGTGTACAAAGTGCACC
GAAATCCAGAGAAACCGCCACCACAGAAACGAAATTTCCTCATGAACGGA
GCTCCCATTCGCCCCGGTGGTCCTTTTGGCGATTAGTTGAACGTTTAGGA
TTTTCTTTCTGTTGACTGTACAGCAAAATAGCACAAAATAGCTCGGCATA
TATCGATCGGTTCATCGGCAGGAGAAGAACGTCGACCACCGCTGGGATAT
ATTAGCGTCTCTTTTTCAGGCAAATCTTCATGAACATCTTTCTGTTGCAC
TTTCTCGCAGTGTACGCGAGTGGTATTCTCATTAGACCTATCTCAACAGT
CCCGTCTCGTCCCCGCCTCTCTTGCAAGTCAAGCCCCAAGCATGAAATCC
CTAACCCCTTTCCGACCGAGAAATTTCTGCGAAGCTGCGGCGACGAACCC
ATCATTTTGTCGCACTCCACCGGGCCTCACTCATTCAACGCTTCATCTGT
GTCCCTTCCTTATGGCCTCCGTACATCTCCGAGAGCACTTCTCTTCTTCC
TTCCTAGTCTGTTTTTTTTTTGCCTTGTTACTGCAATGGTAGCTCTCGTT
TTCGGGGAAGAAAGCGGCGGAGAAGACAGCCGCAATTCTCACGCTCCGTA
GTACTGCCGCCAAACGCAATGGAATGCTGGCACCCTGTGTTCGAGTTGAG
TGCGTTCGTAGGCAACCATCCTCATTTCAGACCAGCTGCTCGAAGACATC
CATGGTTCTTTCTTCTCCTGTCCCACCATAACCCACCATAACGCCTCACC
AGTTTCTCGAAACCCTTTGCTGCACTCGCATACCGCCGTTTGACCCCGAG
CAGCTTCGGAACAGCACCAGCACCAGCAGCCGCCACGACAAACCTGTTCG
GTGCCCCCGCCCCCTCCCGCCGCTACTACAGCCCCGGGCGGCACTTTCGG
CGCTACTCCAGCACCCGCCCCTTGGGGGGGCTTCGGTACCACATTCGGTG
CCACCACCGCTGCCCCCGCCCCTGCCCCGACGGCCTTCGGCGGTGCATTC
GGGACCGCCGCTGCTCCCGCCCCCGCTTCGACGGGATTCGGGTTCGGCAC
CCCGGCAGCGGCAGGACCATTGCTGGCGTTTGGAGCGCCAACAGCGGCGG
CGACTGCACCGCAGGAGATCACTCCTGAGACTCGGTATGATCAGCTCCCG
GAGGTAGTGAGGAAGCAGATCGATGAGTTGGCGAAGGAGATCAAGAGGTG
AGGAGATGGGTCTGTTCGTGGTGTACAGCAGGATATCTGTATTTGTGGAG
TTGGGCGGCAGGTTGACGGAGGCCATACGATAAAGTACTATCGCTGGCAG
CTGGTGCCTGCTTGTTCTTGTTATTGCATGTACTTTCACACGAGGCCATC
GCTAAACATCTAGCGCGTGGTCGCCTTGTTTCCCAGCCCTGGAAAGGCGG
CGAACATTCAAGCATTCAAGTAGTCGTGGACCCGGTTTCCGCTTTCGGCT
GTGAGCGTCGTTT
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Coding sequence (CDS) from alignment at P-lacustris_contig12:71568..74380-

>mRNA_P-lacustris_contig12.1488.1 ID=mRNA_P-lacustris_contig12.1488.1|Name=mRNA_P-lacustris_contig12.1488.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=858bp|location=Sequence derived from alignment at P-lacustris_contig12:71568..74380- (Pleurocladia lacustris SAG_25_93)
ATGAGTCTTTTCGGTGCTCCAGCTGCTGCACCCGCAGCGGGAGGTTTTAC
CTTCGGAGGATCGTCCACTTCTGCGCCCGCCGCCGCTCCTGCAGGAGGAT
TCGGATGAGTCTTTTCGGTGCTCCAGCTGCTGCACCCGCAGCGGGAGGTT
TTACCTTCGGAGGATCGTCCACTTCTGCGCCCGCCGCCGCTCCTGCAGGA
GGATTCGGCTTCGGAACAGCACCAGCACCAGCAGCCGCCACGACAAACCT
GTTCGGTGCCCCCGCCCCCTCCCGCCGCTACTACAGCCCCGGGCGGCACT
TTCGGCGCTACTCCAGCACCCGCCCCTTGGGGGGGCTTCGGTACCACATT
CGGTGCCACCACCGCTGCCCCCGCCCCTGCCCCGACGGCCTTCGGCGGTG
CATTCGGGACCGCCGCTGCTCCCGCCCCCGCTTCGACGGGATTCGGGTTC
GGCACCCCGGCAGCGGCAGGACCATTGCTGGCGTTTGGAGCGCCAACAGC
GGCGGCGACTGCACCGCAGGAGATCACTCCTGACTTCGGAACAGCACCAG
CACCAGCAGCCGCCACGACAAACCTGTTCGGTGCCCCCGCCCCCTCCCGC
CGCTACTACAGCCCCGGGCGGCACTTTCGGCGCTACTCCAGCACCCGCCC
CTTGGGGGGGCTTCGGTACCACATTCGGTGCCACCACCGCTGCCCCCGCC
CCTGCCCCGACGGCCTTCGGCGGTGCATTCGGGACCGCCGCTGCTCCCGC
CCCCGCTTCGACGGGATTCGGGTTCGGCACCCCGGCAGCGGCAGGACCAT
TGCTGGCGTTTGGAGCGCCAACAGCGGCGGCGACTGCACCGCAGGAGATC
ACTCCTGA
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