mRNA_P-lacustris_contig1198.1473.1 (mRNA) Pleurocladia lacustris SAG_25_93
|
Overview
Homology
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A6H5KCB3_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCB3_9PHAE) HSP 1 Score: 182 bits (463), Expect = 4.340e-58 Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query: 1 MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQQPGAGGPAAGG 300
MSWFG EPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKC+ KMHGESDL VGEMSCVDRCVSKYMEAQEKVG+ILK+AEES QQ GAGGPAAGG
Sbjct: 1 MSWFGNSEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCVVKMHGESDLNVGEMSCVDRCVSKYMEAQEKVGVILKRAEESLAAQQGGAGGPAAGG 100
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A6U0JD31_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JD31_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.820e-28 Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1
Query: 1 MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQQ 270
M++FG E +P GP P+ A E++MY+DLF K+SG CF+KC ++ H + DL +GEM+C DRCVSKYMEA EKVG++L++A E Q QQ
Sbjct: 1 MNFFGGGEAQP-QGPDPLFAATSEMEMYADLFQKISGTCFEKCASRRHRDGDLALGEMACTDRCVSKYMEAMEKVGVVLQKANEQQAQQQ 89
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A7S1BN48_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN48_9STRA) HSP 1 Score: 107 bits (267), Expect = 3.550e-28 Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 1 MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQQ 270
M++F E E P+GP P++ AK E++MY+DLF KMS CF KC +K H E DL +GEMSCVDRCV KYMEAQE++G++ ++ E Q Q
Sbjct: 1 MNFFSGKE-EKPAGPDPVEAAKAEIEMYTDLFNKMSASCFSKCSSKKHKEPDLALGEMSCVDRCVGKYMEAQERIGVVFQKFNEEQAAAQ 89
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A7S0GCN6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCN6_9STRA) HSP 1 Score: 106 bits (264), Expect = 8.060e-28 Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query: 1 MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQQ 270
M +FG + E P+GP PM A E++MY+DLF KMS CF+KC + H + +L +GEM CVDRCV+KY+E QEKVGI+L++A E+Q QQ
Sbjct: 1 MGFFG--QEEKPAGPDPMFAATTEMEMYTDLFNKMSASCFEKCASTRHKDDELALGEMGCVDRCVAKYLETQEKVGIVLQKANEAQAAQQ 88
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A7S2HYG5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYG5_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.890e-27 Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 1
Query: 10 FGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQQ 270
FG E +P +GP P+ A E++MY+DLF KM+ CF+KC +K H +SDL +GEMSC DRCV+KY+EAQEK+G+I+++A E+Q QQ
Sbjct: 50 FGTEEKQP-AGPEPLFAATTEMEMYTDLFNKMASSCFQKCASKKHKDSDLALGEMSCTDRCVAKYLEAQEKIGVIIQKANEAQAAQQ 135
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A448YV82_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV82_9STRA) HSP 1 Score: 104 bits (260), Expect = 3.270e-27 Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 1 MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQ 267
M++FG E P+GP P+ AK E++MY+DLF K++ CF KC ++ H E DL +GEM+C DRCVSKY+E QE++G++L++A E Q Q
Sbjct: 1 MNFFGGGEEAKPAGPDPVFAAKTEMEMYTDLFNKIASTCFSKCASRKHKEPDLSLGEMTCADRCVSKYLEGQERIGVVLQKANEEQAQQ 89
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A7S0Y8N1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y8N1_9STRA) HSP 1 Score: 101 bits (252), Expect = 5.080e-26 Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 1 MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQ 267
M++FG E +P GP P+ AK E++MY+DLF K++ CF KC+ + H E DL +GEM+C DRCVSKY+E Q+ VG++L++A E+Q+ Q
Sbjct: 1 MNFFGGEEAQP-QGPDPVFAAKTEMEMYTDLFNKIASTCFSKCVNRKHKEPDLSLGEMTCTDRCVSKYLEGQQIVGVVLQKANEAQVQQ 88
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A1E7FWV3_9STRA (Mitochondrial import inner membrane translocase subunit tim10 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWV3_9STRA) HSP 1 Score: 101 bits (252), Expect = 5.230e-26 Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 4 SWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQQ 270
++FG E + P GP P+ AK E++MY+DLF K++ CF+KC ++ H E DL +GEM+C DRCVSKY+E Q+ +G++L++A E Q QQ
Sbjct: 3 NFFGGGEEQKPQGPDPVFAAKTEMEMYTDLFNKIASECFQKCASRKHKEPDLSLGEMTCTDRCVSKYLEGQQLIGVVLQKANEQQAQQQ 91
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A6T5YYM4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5YYM4_9STRA) HSP 1 Score: 101 bits (251), Expect = 7.420e-26 Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 1
Query: 1 MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQQ 270
MS+FG + +P GP PM A+ E++MY+DLF K++ CF+KC + H E D+ +GEMSC DRCV+KY+E+QE+VG IL++A ESQ QQ
Sbjct: 1 MSFFGGGQAQP-QGPDPMFAAQTEMEMYTDLFNKIARSCFQKCASTRHREPDISLGEMSCTDRCVAKYLESQERVGKILQKANESQAAQQ 89
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Match: A0A7R9W455_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W455_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.780e-25 Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 1 MSWFGKPEPEP-PSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGESDLVVGEMSCVDRCVSKYMEAQEKVGIILKQAEESQMTQ 267
M++FG+ E P+GP P+ A E++MY+DLF ++S CF KC ++ H + DL +GEMSC DRCV KYME+ EKVG+IL++A E+Q Q
Sbjct: 25 MNFFGQKEAAAQPTGPDPLFAATAEMEMYADLFQRISSTCFSKCASRRHRDGDLALGEMSCTDRCVGKYMESMEKVGVILQKANEAQAAQ 114 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1198.1473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1198.1473.1 >prot_P-lacustris_contig1198.1473.1 ID=prot_P-lacustris_contig1198.1473.1|Name=mRNA_P-lacustris_contig1198.1473.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=100bp MSWFGKPEPEPPSGPSPMDLAKQEVDMYSDLFTKMSGLCFKKCITKMHGEback to top mRNA from alignment at P-lacustris_contig1198:17492..19649- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1198.1473.1 ID=mRNA_P-lacustris_contig1198.1473.1|Name=mRNA_P-lacustris_contig1198.1473.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2158bp|location=Sequence derived from alignment at P-lacustris_contig1198:17492..19649- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1198:17492..19649- >mRNA_P-lacustris_contig1198.1473.1 ID=mRNA_P-lacustris_contig1198.1473.1|Name=mRNA_P-lacustris_contig1198.1473.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=600bp|location=Sequence derived from alignment at P-lacustris_contig1198:17492..19649- (Pleurocladia lacustris SAG_25_93)back to top |