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Homology
BLAST of mRNA_P-lacustris_contig1195.1464.1 vs. uniprot
Match: D7FUV4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV4_ECTSI) HSP 1 Score: 290 bits (741), Expect = 2.120e-85 Identity = 154/174 (88.51%), Postives = 162/174 (93.10%), Query Frame = 3
Query: 825 VKRNAGAPSSASRRLHKSPRTSIDRVDYTPLRSRTPISDGSGGIRVHAQRIFTISDDDVEEMLKTKAKGASKWDYKTRIQHQNELLAQLRAMLNTMLQQKHRFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENARFQSVEAGLKADLKLAYEERGLLRAENHKLVAKV 1346
KRNAGAP SA+RR+HKSPRTSIDR DYTPLRSRTP S+G GGIRVHAQRIFT+SDDDVE+MLKTK KGASKWDYKTRIQ+QNELLAQLRAMLNTMLQQK RFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENAR+QSVEAGLKADLKLA EER LLRAEN KL K+
Sbjct: 344 TKRNAGAPGSATRRVHKSPRTSIDR-DYTPLRSRTPGSEGRGGIRVHAQRIFTVSDDDVEDMLKTKVKGASKWDYKTRIQNQNELLAQLRAMLNTMLQQKQRFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENARYQSVEAGLKADLKLAKEERALLRAENEKLATKL 516
BLAST of mRNA_P-lacustris_contig1195.1464.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE) HSP 1 Score: 289 bits (740), Expect = 1.390e-83 Identity = 154/173 (89.02%), Postives = 161/173 (93.06%), Query Frame = 3
Query: 825 VKRNAGAPSSASRRLHKSPRTSIDRVDYTPLRSRTPISDGSGGIRVHAQRIFTISDDDVEEMLKTKAKGASKWDYKTRIQHQNELLAQLRAMLNTMLQQKHRFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENARFQSVEAGLKADLKLAYEERGLLRAENHKLVAK 1343
KRNAGAP SA+RR+HKSPRTSIDR DYTPLRSRTP S+G GGIRVHAQRIFT+SDDDVE+MLKTK KGASKWDYKTRIQ+QNELLAQLRAMLNTMLQQK RFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENAR+QSVEAGLKADLKLA EER LLRAEN KL K
Sbjct: 347 TKRNAGAPGSATRRVHKSPRTSIDR-DYTPLRSRTPGSEGRGGIRVHAQRIFTVSDDDVEDMLKTKVKGASKWDYKTRIQNQNELLAQLRAMLNTMLQQKQRFKDACIDTEAALKAEMRKVNSRCEDVERDHVELLDENARYQSVEAGLKADLKLAKEERALLRAENEKLATK 518
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Model size | 1346 |
| Cds size | 735 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815507.888918-CDS-P-lacustris_contig1195:60288..60564 | 1622815507.888918-CDS-P-lacustris_contig1195:60288..60564 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1195 60289..60564 + |
| 1693493579.7768488-CDS-P-lacustris_contig1195:60288..60564 | 1693493579.7768488-CDS-P-lacustris_contig1195:60288..60564 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1195 60289..60564 + |
| 1622815507.902045-CDS-P-lacustris_contig1195:60645..61048 | 1622815507.902045-CDS-P-lacustris_contig1195:60645..61048 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1195 60646..61048 + |
| 1693493579.7854774-CDS-P-lacustris_contig1195:60645..61048 | 1693493579.7854774-CDS-P-lacustris_contig1195:60645..61048 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1195 60646..61048 + |
| 1622815507.9146397-CDS-P-lacustris_contig1195:62195..62251 | 1622815507.9146397-CDS-P-lacustris_contig1195:62195..62251 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1195 62196..62251 + |
| 1693493579.7978642-CDS-P-lacustris_contig1195:62195..62251 | 1693493579.7978642-CDS-P-lacustris_contig1195:62195..62251 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1195 62196..62251 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815507.9299402-UTR-P-lacustris_contig1195:62251..62416 | 1622815507.9299402-UTR-P-lacustris_contig1195:62251..62416 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 62252..62416 + |
| 1693493579.8068373-UTR-P-lacustris_contig1195:62251..62416 | 1693493579.8068373-UTR-P-lacustris_contig1195:62251..62416 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 62252..62416 + |
| 1622815507.9401174-UTR-P-lacustris_contig1195:63404..63544 | 1622815507.9401174-UTR-P-lacustris_contig1195:63404..63544 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 63405..63544 + |
| 1693493579.8162677-UTR-P-lacustris_contig1195:63404..63544 | 1693493579.8162677-UTR-P-lacustris_contig1195:63404..63544 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 63405..63544 + |
| 1622815507.949082-UTR-P-lacustris_contig1195:64201..64330 | 1622815507.949082-UTR-P-lacustris_contig1195:64201..64330 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 64202..64330 + |
| 1693493579.826005-UTR-P-lacustris_contig1195:64201..64330 | 1693493579.826005-UTR-P-lacustris_contig1195:64201..64330 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 64202..64330 + |
| 1622815507.960429-UTR-P-lacustris_contig1195:64702..64766 | 1622815507.960429-UTR-P-lacustris_contig1195:64702..64766 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 64703..64766 + |
| 1693493579.8344908-UTR-P-lacustris_contig1195:64702..64766 | 1693493579.8344908-UTR-P-lacustris_contig1195:64702..64766 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 64703..64766 + |
| 1622815507.9710655-UTR-P-lacustris_contig1195:64999..65112 | 1622815507.9710655-UTR-P-lacustris_contig1195:64999..65112 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 65000..65112 + |
| 1693493579.8423083-UTR-P-lacustris_contig1195:64999..65112 | 1693493579.8423083-UTR-P-lacustris_contig1195:64999..65112 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1195 65000..65112 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1195.1464.1 >prot_P-lacustris_contig1195.1464.1 ID=prot_P-lacustris_contig1195.1464.1|Name=mRNA_P-lacustris_contig1195.1464.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=245bp
MLDERQGTRRSPRRASLEGSENECELGRVSTGSAARGGPGTPSKHKGQQP VEAARSPLTFADNGGAPPLVGPAQQRSSGLTPSKVKPSTATGRNSRSSPD TSAAATTNAIAHAAAASMLSPTRTGSSNSSSTAISRATGGSRSTATRSGT SSSMTTTRSRAARAGAATVAAGAARSSGYGARARPWRDGERSCSSDEIWD SARGNGPLRPQQGYFGNGGSVIQAPVAQAVAADCGFRTHDADSD* back to topmRNA from alignment at P-lacustris_contig1195:60289..65112+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1195.1464.1 ID=mRNA_P-lacustris_contig1195.1464.1|Name=mRNA_P-lacustris_contig1195.1464.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4824bp|location=Sequence derived from alignment at P-lacustris_contig1195:60289..65112+ (Pleurocladia lacustris SAG_25_93) ATGCTCGATGAAAGGCAAGGGACAAGGCGGAGCCCTCGTCGCGCGTCGCT
CGAGGGAAGCGAGAATGAGTGCGAGCTTGGACGCGTTTCAACTGGCTCTG
CAGCCAGAGGCGGACCCGGTACGCCATCGAAGCATAAGGGGCAGCAGCCC
GTTGAAGCGGCACGCTCTCCCCTCACCTTCGCCGACAACGGCGGCGCTCC
TCCCCTGGTGGGACCGGCACAACAGCGGTCCTCCGGCTTGACCCCTTCCA
AGGTGAAGCCATCCACAGCCACGGGCGTGAGCCGCTTCGGCTTCAAGCCT
CCAGGAGGATCGTTGTCGCCGAGGGGAAGACCCACGGCGGGCACCGGAGG
ATCTGAGCGCAACAGCAGAAGCAGCCCGGACACTTCAGCAGCAGCAACGA
CCAATGCAATTGCTCACGCGGCCGCGGCTTCGATGCTGTCTCCGACTCGA
ACGGGCAGCTCCAACAGTAGCAGTACCGCCATCAGCCGGGCAACTGGAGG
CAGCAGGAGCACGGCCACGAGGTCCGGGACTTCCAGCAGTATGACCACCA
CCCGGTCGCGAGCTGCAAGGGCCGGGGCAGCAACAGTGGCAGCCGGAGCT
GCTAGGAGCAGCGGGTACGGGGCCAGGGCAAGGCCTTGGCGCGACGGCGA
GCGGTCGTGCTCGAGCGACGAGATCTGGGACAGCGCCAGAGGGAACGGGC
CGCTCCGGCCTCAGCAGGGCTACTTCGGGAATGGCGGCTCCGTCATCCAG
GCGCCTGTCGGTGAGAGTTCGTTCGCGAGTTCGTTCGCGTAGCGCATGTT
GCCGTAGGTGGGTATGGCGCCATGGTTAAGTTGTGCGCTGTGAGTGCCGT
TTGTCGACGTATGCACATCAGCAGGAGCTGCAAGTTTCCACACTGGGTCC
CATGCCGTATCAAGCGTCTCTCCGCCGCCGTCGTGCCCGTAACTGCTGTG
TTATTTTGTTTCCTAAAGACTTGGAGATTTGAGTTCTCGATTGACGAGGG
AAAAGGACGGCTGAACCTTTTCTCACGATAACAATTCAGGCTGGCACCGC
AGAGGGAAGGAAGGTGGAGGAAACCAACAATCAAACTCCTGGGTGGCCTA
TCCTGTGTGACCCCGGTCGATGCACTTGCCTACATTACTCACCAACAGAG
TGTGTCGCGTCCAGAATAGTGTAGGTGTTACGGCAACACACCGACACGAT
TTTTTGGCATCATGAATAGTTTGGGAGCATCTTTGCCTCTGTGCGGGTGT
CCACACGGCGGAGGGGCAACCATTCGGTTGCTTACTTTGGCAACGATGCA
TTTCAAGCACTTTTTAGCGTTTGCTGTGTAGTGCATGTGGTTTAGGCGTG
AAATTCACATGCTGTCAGAACTCAGGCGCTCCCGACCCCTTCCCGCAGTT
TCTCTACTGCGCACCGACTAGCTGCTTTTTCATGCTTGACTACACCTGGT
ACTTGCGGTGCCGCTACTCTCTGGCATGGAATGTTTTGTTTTAGAGACCT
TGACTGCTCGAGTTCCATACCTGGGTGCAAGAAAAATCTGTTTCCAAGCT
TTTCCCGGCCTTAGTCTGTGTCCGTGTTTGCACAAAAACTTGCGCTCAGT
TGTAGGGTCGCCGCTGCTGAGCACAAACCACCCGGCACGCGCCCTGGGGC
CGGCTTCATTCGGGCTACGGATCAATCCATTGCCTACCCAGTCATGTGGA
CTGTCGGCTGAGCTACTTACTCTTAGCCAGCTCCACATTCTCCCTGACAA
AAATGGTCTGCATGTCTTTCATGGTCGAAGAGATTTGCACCATCCCTGGA
CCCGGCCCCGAAAAAAGCGTCGCGTATGTAGGTGACAGCTTGAGACCCGC
CGCCACCACCATCACCAAATCACGCACCGCCTCCAACACCCCACAAATAT
CATTCAGCACAAGCTGTCGCAGCCGATTGCGGTTTCCGGACGCATGACGC
GGACAGCGACTAAGGTCAAGCCCCGGCTTGAGTTTTCCGGCAAGGCGGCC
GCCGCGGCCGGAGGCGCGGTGGGGAGTATCGCGTCCCCAACATCGGGCAG
GGGTCAAGCGGAACGCGGGCGCGCCCAGCTCGGCGAGCAGGAGGCTGCAC
AAGAGCCCACGGACCTCAATCGATCGCGGTAAGAAAAGACAAGCCTCGCG
AAAATAAATAGCAGTAGGGTGGACGCGTAAGCATCGGGGACAGTTCGGTG
TATTTGGCATCATCGACAGTGGTGTGATAGGAGGGAAATGATAGGAGAGA
AGAGTACTAATAGTTTAGGCGTCGTTGCCACACCCCCGTTGGTTTGTTTT
CTTCGAAACCCGATTTCGTCTGACTTGGGCGAGAAAGCCCCTTTCGTTGG
ACAGCGATGAGCAGCATGCACCAAAGACTCAGGAGCAATGACGTACAGCA
GGCGGAAGTTGTCCTACGCAAACGTGATGACAGCATGTGGATCGATCCTT
TTAGAGTTCCCACCCCGCCCTGCCGTTGGTCTTTTTCCCGCAAGCTTGCG
GGACAGCTATTTCAATCTGCCTACGTGCACCGCGAACACATCCAAAAGAA
CACAACACAAGAACTGGTGCTCAGAGGTATCGTTTGAAATGCTCCTGCTC
ATTTAGCTTAGCCGGCGGCAACCATTCGGCGCACGGTTTACGTTTTATGC
ATATAGCACGGGGAGCAGGGAGGGGGTGTACTCCTGATTCTGCGAATGGG
CCGGGGAGTTGAAGTCATGTCTCTCCATGTGTGTGCGTAGGGGGTGGAGT
GTACACCTAACATGGTTGAGGGTACTCATCTCAAAAGCTGGAATCAACCA
ATCATAACATTTCAACTAGTGACCCGGGACCAACTGCTGTCTCTCTCTCC
ATTGGAGAGTCGTGAGCAGGGAGTCTTTTTTCGGGCGCACAAGCTGTGTG
CGCTAAAACTTGGCGCTTCTGTCGTTATCGTTTCCGTGTGTATGCGTATC
CGTGAGTTCGGGTGTTGACACCGACCGCGCCGATCGCCTGCCCGATGCAT
GATGCGTCTCCTGGCGCCGCAAGATAAACGACGAAGGGCACCCCAAACAT
TGGTGACCCGTGATGTGTTTCGTTCTCTTCCACTGCCCGAACACGAACTC
CTTCCCTCCGCCACAGTAGACTACACGCCGTTGCGATCCCGTACCCCGAT
CTCGGACGGGAGCGGCGGTATCAGGGTGCACGCGCAACGAATCTTCACTA
TCAGCGACGATGACGTCGAGGAGATGCTCAAGACGAAGGCGAAGGGCGCG
AGCAAGGTGAGCTTTACCCCAACCCCAACCCTAACCCTAGGCAACATTGG
CGTCGGCCTTGCCTTTGTTTCGTCGGGTCGGACTCCCGTCTTGGAGGAGA
ATGAAGTGCTAGGTATTGTGCGGGCGTTCGCTCGGAGCGTTTGCGGCGCT
TAAGATCTGAAGCTCGTCGCGACGAGGTGCTCACGATCAAGGACGCGGGA
CGCTAGCAAGGTCGGTTGACGTAACGGCAGGGCTTACCGTAATCCCTCTG
AGTTACACCCCGCCTGTGCAGTTAGTACCCCCCCACGTTTTCGGCCGAAA
AACGTTGAAATTCGTAAGATCGCCCCAGGGGGCAAGTCGGAAAAAAAAAA
ATCCCCCCCCAGGGACCACAATTTCAAAAAAAAATCGCCCCACTGGGTCT
AACTTGGAGGGGATCACGGGTGTTACTTTCTTTGAGGCGGACCCCGCCTC
TTTTTGGTAGAGTTTCACCCCCCGCCCCCGCCGAACTCTCCTCAGGCTGT
GTGTGTGTGTGTGTGTGTGTGTTCGTCTTGTGGGTAAACTATCTCTCACG
ACTCGCGATGACTGCGAATGGCCGGCATGCCTTAACAGTTCTCACGCTCC
ACTGATAAGTCAATTTGTCAATTTGTTTGGCTTAGTTGCTTATGGCCGAT
TGTGTTGTTGCAGTGGGACTACAAGACTCGCATCCAGCACCAGAACGAGC
TGCTGGCGCAGCTCCGGGCGATGCTGAACACCATGCTGCAGCAGAAGCAC
CGCTTCAAGGACGCTTGCATTGACACGGAGGCCGCGCTAAAGGTGACCGA
CTTACCTGGCATACGCATACTCGACCTCGACACCGCTTCATGTTGTTTAC
GACACAATGACAGCTGGTTTGACTTTGACGCTATTATCCGTTGGACGTTC
CTTCCTCTTTCTCTGGTGGGGTTAATGGCTGAGGGATGCTCCCCACGGCA
ACACTGATGAGATGAAATAGGCGCACGCCCATTCTACGTTTTTTTTTGGG
GTTGCCCATTTGGTAAGATAAGGTAGGTGTGGGGCATGGGTTGAAATCGA
TCCTTCCCTATAGTGCCTTTACCATCGCTCCAACTACCACAACGAAATCG
ATCCTTCCCTATAGTGCCTTTACCATCGCTCCAACTACCACAACGCGGTG
CGGTGCGCTGTTAGGCGGAGATGAGAAAAGTGAATTCGCGCTGCGAGGAC
GTGGAGAGGGATCATGTCGAGCTCCTTGGTGAGTGCTCATGGGTTTCACC
AATTATTTTGTTTCTTTTTCAATGTTTGGTTGTTTGCTTATCGCACAATC
TCCCACGACTTTTCACAACTGATACGCGAAATACTGATGCCCCCTCTGCT
ACAGTCTTTCTTGTCTCATCTTGTCGTCTACGTTTTATCGTTGCTTCTAT
CATACATCATAATTGTACACCATACGGTCTTGGTTTGGCCCTGATCGATT
TGATTGGCCAGACGAGAACGCACGGTTTCAATCGGTGGAGGCGGGGCTGA
AGGCTGACCTGAAGCTAGCCTACGAGGAGCGCGGTCTGCTGAGGGCCGAG
AATCATAAGCTGGTCGCGAAGGTA back to topCoding sequence (CDS) from alignment at P-lacustris_contig1195:60289..65112+ >mRNA_P-lacustris_contig1195.1464.1 ID=mRNA_P-lacustris_contig1195.1464.1|Name=mRNA_P-lacustris_contig1195.1464.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1470bp|location=Sequence derived from alignment at P-lacustris_contig1195:60289..65112+ (Pleurocladia lacustris SAG_25_93) ATGCTCGATGAAAGGCAAGGGACAAGGCGGAGCCCTCGTCGCGCGTCGCT CGAGGGAAGCGAGAATGAGTGCGAGCTTGGACGCGTTTCAACTGGCTCTG CAGCCAGAGGCGGACCCGGTACGCCATCGAAGCATAAGGGGCAGCAGCCC GTTGAAGCGGCACGCTCTCCCCTCACCTTCGCCGACAACGGCGGCGCTCC TCCCCTGGTGGGACCGGCACAACAGCGGTCCTCCGGCTTGACCCCTTCCA AGGTGAAGCCATCCACAGCCACGGGCATGCTCGATGAAAGGCAAGGGACA AGGCGGAGCCCTCGTCGCGCGTCGCTCGAGGGAAGCGAGAATGAGTGCGA GCTTGGACGCGTTTCAACTGGCTCTGCAGCCAGAGGCGGACCCGGTACGC CATCGAAGCATAAGGGGCAGCAGCCCGTTGAAGCGGCACGCTCTCCCCTC ACCTTCGCCGACAACGGCGGCGCTCCTCCCCTGGTGGGACCGGCACAACA GCGGTCCTCCGGCTTGACCCCTTCCAAGGTGAAGCCATCCACAGCCACGG GCCGCAACAGCAGAAGCAGCCCGGACACTTCAGCAGCAGCAACGACCAAT GCAATTGCTCACGCGGCCGCGGCTTCGATGCTGTCTCCGACTCGAACGGG CAGCTCCAACAGTAGCAGTACCGCCATCAGCCGGGCAACTGGAGGCAGCA GGAGCACGGCCACGAGGTCCGGGACTTCCAGCAGTATGACCACCACCCGG TCGCGAGCTGCAAGGGCCGGGGCAGCAACAGTGGCAGCCGGAGCTGCTAG GAGCAGCGGGTACGGGGCCAGGGCAAGGCCTTGGCGCGACGGCGAGCGGT CGTGCTCGAGCGACGAGATCTGGGACAGCGCCAGAGGGAACGGGCCGCTC CGGCCTCAGCAGGGCTACTTCGGGAATGGCGGCTCCGTCATCCAGGCGCC TGTCGCGCAACAGCAGAAGCAGCCCGGACACTTCAGCAGCAGCAACGACC AATGCAATTGCTCACGCGGCCGCGGCTTCGATGCTGTCTCCGACTCGAAC GGGCAGCTCCAACAGTAGCAGTACCGCCATCAGCCGGGCAACTGGAGGCA GCAGGAGCACGGCCACGAGGTCCGGGACTTCCAGCAGTATGACCACCACC CGGTCGCGAGCTGCAAGGGCCGGGGCAGCAACAGTGGCAGCCGGAGCTGC TAGGAGCAGCGGGTACGGGGCCAGGGCAAGGCCTTGGCGCGACGGCGAGC GGTCGTGCTCGAGCGACGAGATCTGGGACAGCGCCAGAGGGAACGGGCCG CTCCGGCCTCAGCAGGGCTACTTCGGGAATGGCGGCTCCGTCATCCAGGC GCCTGTCGCACAAGCTGTCGCAGCCGATTGCGGTTTCCGGACGCATGACG CGGACAGCGACTAACACAAGCTGTCGCAGCCGATTGCGGTTTCCGGACGC ATGACGCGGACAGCGACTAA back to top
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