mRNA_P-lacustris_contig1195.1459.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1195.1459.1
Unique NamemRNA_P-lacustris_contig1195.1459.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1195.1459.1 vs. uniprot
Match: D7FUW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 3.690e-44
Identity = 93/131 (70.99%), Postives = 111/131 (84.73%), Query Frame = 3 
Query:   51 AAAVMNCSGGVQSDYGG-VRDVGQLVQRVETSTRAISREKDSILKALRIERERTARLRDALWQEGGVKREWEMLTEASRTLKRRLESTERVRHRQKELIRELQAVEADLTFADVGGVPGKFSLDPLPEISP 440
            AAA  +CS GV+ DYGG VRDVG+LV+RVE STRA+SREK+ I K LRIE+E+TARL++ALWQEGG KREWEMLT+AS  LK+RLESTER+R+RQKELIRELQAVEAD+ FA+ G + G  S DPLP +SP
Sbjct:  137 AAAAASCSSGVRRDYGGGVRDVGELVRRVEASTRAVSREKEHIAKILRIEKEKTARLQEALWQEGGTKREWEMLTQASSLLKQRLESTERIRNRQKELIRELQAVEADIAFANAGNMAGMVSTDPLPNLSP 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1195.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUW0_ECTSI3.690e-4470.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1195contigP-lacustris_contig1195:11463..13755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1347
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1195.1459.1prot_P-lacustris_contig1195.1459.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1195 12061..13693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.181797-UTR-P-lacustris_contig1195:11462..120601622815508.181797-UTR-P-lacustris_contig1195:11462..12060Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1195 11463..12060 -
1693493579.8992105-UTR-P-lacustris_contig1195:11462..120601693493579.8992105-UTR-P-lacustris_contig1195:11462..12060Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1195 11463..12060 -
1622815508.243665-UTR-P-lacustris_contig1195:13693..137551622815508.243665-UTR-P-lacustris_contig1195:13693..13755Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1195 13694..13755 -
1693493579.942914-UTR-P-lacustris_contig1195:13693..137551693493579.942914-UTR-P-lacustris_contig1195:13693..13755Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1195 13694..13755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.1946518-CDS-P-lacustris_contig1195:12060..124741622815508.1946518-CDS-P-lacustris_contig1195:12060..12474Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 12061..12474 -
1693493579.907814-CDS-P-lacustris_contig1195:12060..124741693493579.907814-CDS-P-lacustris_contig1195:12060..12474Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 12061..12474 -
1622815508.2103155-CDS-P-lacustris_contig1195:12811..128711622815508.2103155-CDS-P-lacustris_contig1195:12811..12871Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 12812..12871 -
1693493579.9151459-CDS-P-lacustris_contig1195:12811..128711693493579.9151459-CDS-P-lacustris_contig1195:12811..12871Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 12812..12871 -
1622815508.2215972-CDS-P-lacustris_contig1195:13193..132861622815508.2215972-CDS-P-lacustris_contig1195:13193..13286Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 13194..13286 -
1693493579.9245918-CDS-P-lacustris_contig1195:13193..132861693493579.9245918-CDS-P-lacustris_contig1195:13193..13286Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 13194..13286 -
1622815508.2330453-CDS-P-lacustris_contig1195:13573..136931622815508.2330453-CDS-P-lacustris_contig1195:13573..13693Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 13574..13693 -
1693493579.9326372-CDS-P-lacustris_contig1195:13573..136931693493579.9326372-CDS-P-lacustris_contig1195:13573..13693Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1195 13574..13693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1195.1459.1

>prot_P-lacustris_contig1195.1459.1 ID=prot_P-lacustris_contig1195.1459.1|Name=mRNA_P-lacustris_contig1195.1459.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=229bp
MNCSGGVQSDYGGVRDVGQLVQRVETSTRAISREKDSILKALRIERERTA
RLRDALWQEGGVKREWEMLTEASRTLKRRLESTERVRHRQKELIRELQAV
EADLTFADVGGVPGKFSLDPLPEISPPPPPPPPPPIVRGKNDSSSSPLGL
GRNNVKKRERMTQGKSSGRRREDTADCVRVSSRRNVVTSRDHAGRDRRRF
SRSKGLPSLADVMGWDWKTPAAALGIKG*
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mRNA from alignment at P-lacustris_contig1195:11463..13755-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1195.1459.1 ID=mRNA_P-lacustris_contig1195.1459.1|Name=mRNA_P-lacustris_contig1195.1459.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2293bp|location=Sequence derived from alignment at P-lacustris_contig1195:11463..13755- (Pleurocladia lacustris SAG_25_93)
CCCCGCCTTCATCAAAGTCCTTGCACAACCGGCATGTGCCCGCTGCGCCC
GCTGCTGCGGTCATGAATTGCAGTGGCGGTGTTCAGTCGGACTACGGTGG
TGTGAGGGACGTTGGGCAGCTGGTGCAGCGGGTGGAGACCTCGACGAGAG
CCATTTCGCGAGAGAAGGACAGCATCCTCAAGGTGTCATGAGTACTGCTG
GAAACTGTGTTGTGTTCTTTTCCTATGCAGAGCGTTGGATGACCGCAAAC
CCTTTCGTCGAACCCCTGCCATGTACCTTCTGATCCGGTGACGGTATCGA
CTAGACTCTGCGTTTGACGAGTTGCGCTTAGTATGTGAGTATGTGATGAT
GCTCGCGTGGGGAACCAATGACACATCTGAGAACGGCAACCCGCCCGCCT
AACGTTGGAGGTAAGTAGAGAAATGGGGCGTGTTCCTGTGGTTCGCCATG
TTGCCCGTGCTTTTTTCAGGCCCTACGAATAGAGAGAGAGAGGACCGCGC
GATTACGAGACGCCCTCTGGCAAGAAGGTGGAGTCAAGCGCGAGTGGGAG
ATGCTCACAGAGGTAAAAAATCAACAATCACGAAGTACTTTAGGGTTCTG
AGGGACAATGAGCTCCAGAATGCGGCCATACACGTTATTGAGCACCCCTC
AACATAGCTACACGGCTGCGCGCATCGCTCACCACACCCACCGCCGATCC
TTGACATTCCTCTACGGATGGGTGTTCATCTTGTGATACGCCACGTCCGT
ACCACCACGATCACGACCACTACCATGGCCTCCGTATTTCGATCCGTTCT
CAGTTTCGGCTGTCTGGATTGGGGAAGGCGTATGCGGTTCTGCATTAGAA
AACAAGCCTATATATGACGTGCCTAATTGATCAGGCTTCGCGTACGCTCA
AGCGCCGGCTGGAATCGACGGAGCGAGTCAGGCATCGGCAAAAGGTATAA
TCAGTAGCCTTGGCGAACAGTAGCCCGTGTCGCCCTTGCATTGTGCTCGC
CACCCGTGCCCATGACGCCGATCTTGCCAATGAATGGTGCGATCATCGCT
CCCATGAGTGCGAGCCGTTTCGCCGTCAATTCGATTTCCAATGAGATACA
GTGCGTACGAGTTACGATGTACTAAAGAAACCCGTTCTAGCGTGCTTGAA
CTTGGGCCGCCGAGTTGCGCTCATCCTTCGTACGACAGATGCCGCCGCCG
ACCGAAAAGCAAGACGCTTCTCGATTTTCGGCAAGACCCCAAAACACCTC
TGGTGCCATGTTTTCCTTGGTTCCTTCTCAGGAGCTTATCAGAGAATTGC
AGGCCGTGGAGGCCGACCTGACCTTCGCCGACGTCGGCGGCGTGCCGGGA
AAGTTCTCGCTTGATCCCTTGCCCGAAATTTCGCCGCCGCCGCCGCCGCC
GCCACCACCACCCATCGTCAGAGGGAAAAACGATTCTTCCTCGTCGCCGC
TGGGACTTGGCCGAAACAACGTAAAAAAACGGGAGCGAATGACGCAGGGG
AAAAGCAGCGGGCGGAGGCGAGAGGATACCGCGGATTGTGTTAGGGTATC
TTCGCGGAGAAACGTAGTGACCAGCCGGGACCACGCCGGTCGCGACCGGC
GGCGCTTCAGTCGGTCGAAAGGGTTGCCTTCGTTGGCGGACGTGATGGGG
TGGGATTGGAAGACACCGGCGGCGGCGTTGGGAATAAAAGGCTAGGGCGA
GCAACGGCGTCAATGTCGAAAACGACAGGTGATACCGCCGTTCGAGCGGA
ACGCCCCCGACGGAGCGGCCGCCTGATCGACGGGACCGCAAAGGCGCGGA
GAAGCGCCGCGGCGAGGTTCAGACAGCCGAAAGGAGGAGAGTTCCCAGAG
AGAAGACAAACGGTACATGACGGCCCTTTAGGTCGAACCCGACGCACGAG
CATGGTTGAGTATCCCACGGCAACCACGACGACGAAAATGCCGACAGGGA
GAGTTGAAAACAAGCTGAAATCGGGAGCCTCGACGGCGGAGCCGCGCCGT
CGGGACCCCTCTTCAGCGCCGGCGTCATGCAGAAAACGTGATCTTCGGCC
ACAGGCCACGGGGGTCAGGCTTTCGCCGAAGGCGAAGATTAGGGCGCCCA
CGGCGGCGAGCGCCGGCAAGGCAACAACAGTGCGGAGGCCGGTGGGATCT
TCGATCCGCATTTATACTACTACGCGAGTTGGCGACGGGCAGAGGAAAGG
TGCGATCGGCGGTAAGGCGTGCCGCTGTTGACCCGCTGCAGCACTGGCTT
CTCGGCCTTCGCGCACGGCTCGCCGAGGTCGATGCAGCAGTCC
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Coding sequence (CDS) from alignment at P-lacustris_contig1195:11463..13755-

>mRNA_P-lacustris_contig1195.1459.1 ID=mRNA_P-lacustris_contig1195.1459.1|Name=mRNA_P-lacustris_contig1195.1459.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1374bp|location=Sequence derived from alignment at P-lacustris_contig1195:11463..13755- (Pleurocladia lacustris SAG_25_93)
ATGAATTGCAGTGGCGGTGTTCAGTCGGACTACGGTGGTGTGAGGGACGT
TGGGCAGCTGGTGCAGCGGGTGGAGACCTCGACGAGAGCCATTTCGCGAG
AGAAGGACAGCATCCTCAAGATGAATTGCAGTGGCGGTGTTCAGTCGGAC
TACGGTGGTGTGAGGGACGTTGGGCAGCTGGTGCAGCGGGTGGAGACCTC
GACGAGAGCCATTTCGCGAGAGAAGGACAGCATCCTCAAGGCCCTACGAA
TAGAGAGAGAGAGGACCGCGCGATTACGAGACGCCCTCTGGCAAGAAGGT
GGAGTCAAGCGCGAGTGGGAGATGCTCACAGAGGCCCTACGAATAGAGAG
AGAGAGGACCGCGCGATTACGAGACGCCCTCTGGCAAGAAGGTGGAGTCA
AGCGCGAGTGGGAGATGCTCACAGAGGCTTCGCGTACGCTCAAGCGCCGG
CTGGAATCGACGGAGCGAGTCAGGCATCGGCAAAAGGCTTCGCGTACGCT
CAAGCGCCGGCTGGAATCGACGGAGCGAGTCAGGCATCGGCAAAAGGAGC
TTATCAGAGAATTGCAGGCCGTGGAGGCCGACCTGACCTTCGCCGACGTC
GGCGGCGTGCCGGGAAAGTTCTCGCTTGATCCCTTGCCCGAAATTTCGCC
GCCGCCGCCGCCGCCGCCACCACCACCCATCGTCAGAGGGAAAAACGATT
CTTCCTCGTCGCCGCTGGGACTTGGCCGAAACAACGTAAAAAAACGGGAG
CGAATGACGCAGGGGAAAAGCAGCGGGCGGAGGCGAGAGGATACCGCGGA
TTGTGTTAGGGTATCTTCGCGGAGAAACGTAGTGACCAGCCGGGACCACG
CCGGTCGCGACCGGCGGCGCTTCAGTCGGTCGAAAGGGTTGCCTTCGTTG
GCGGACGTGATGGGGTGGGATTGGAAGACACCGGCGGCGGCGTTGGGAAT
AAAAGGCTAGGAGCTTATCAGAGAATTGCAGGCCGTGGAGGCCGACCTGA
CCTTCGCCGACGTCGGCGGCGTGCCGGGAAAGTTCTCGCTTGATCCCTTG
CCCGAAATTTCGCCGCCGCCGCCGCCGCCGCCACCACCACCCATCGTCAG
AGGGAAAAACGATTCTTCCTCGTCGCCGCTGGGACTTGGCCGAAACAACG
TAAAAAAACGGGAGCGAATGACGCAGGGGAAAAGCAGCGGGCGGAGGCGA
GAGGATACCGCGGATTGTGTTAGGGTATCTTCGCGGAGAAACGTAGTGAC
CAGCCGGGACCACGCCGGTCGCGACCGGCGGCGCTTCAGTCGGTCGAAAG
GGTTGCCTTCGTTGGCGGACGTGATGGGGTGGGATTGGAAGACACCGGCG
GCGGCGTTGGGAATAAAAGGCTAG
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