mRNA_P-lacustris_contig1194.1455.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1194.1455.1
Unique NamemRNA_P-lacustris_contig1194.1455.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1194.1455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1194contigP-lacustris_contig1194:10678..11273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.420885-CDS-P-lacustris_contig1194:10677..110311622815507.420885-CDS-P-lacustris_contig1194:10677..11031Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1194 10678..11031 +
1693493579.483643-CDS-P-lacustris_contig1194:10677..110311693493579.483643-CDS-P-lacustris_contig1194:10677..11031Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1194 10678..11031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.4320157-UTR-P-lacustris_contig1194:11031..112731622815507.4320157-UTR-P-lacustris_contig1194:11031..11273Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1194 11032..11273 +
1693493579.4948978-UTR-P-lacustris_contig1194:11031..112731693493579.4948978-UTR-P-lacustris_contig1194:11031..11273Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1194 11032..11273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1194.1455.1prot_P-lacustris_contig1194.1455.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1194 10678..11031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1194.1455.1

>prot_P-lacustris_contig1194.1455.1 ID=prot_P-lacustris_contig1194.1455.1|Name=mRNA_P-lacustris_contig1194.1455.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=118bp
TRLLLSSPLHYIRNIITPSPPPLSCRISLPPFHPDGIRSLFPIGDLFPSE
ISFPSETFPRRQGFCRPSPLPVLLPIFFSLTPTPTPRARSTTERAIHNPI
IQSEVSRDEPDKIRIYT*
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mRNA from alignment at P-lacustris_contig1194:10678..11273+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1194.1455.1 ID=mRNA_P-lacustris_contig1194.1455.1|Name=mRNA_P-lacustris_contig1194.1455.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=596bp|location=Sequence derived from alignment at P-lacustris_contig1194:10678..11273+ (Pleurocladia lacustris SAG_25_93)
ACCAGACTCCTTCTCTCCTCTCCTCTACACTATATCAGAAATATTATAAC
CCCTTCCCCCCCTCCCTTGTCGTGTCGTATTTCTCTTCCACCGTTCCACC
CTGATGGTATCCGCTCACTCTTTCCCATCGGAGACCTCTTTCCATCGGAG
ATTTCCTTCCCATCGGAAACGTTTCCAAGAAGACAAGGTTTTTGCCGTCC
CTCCCCTCTTCCCGTCCTCCTACCGATTTTTTTTTCACTCACACCAACAC
CAACACCAAGAGCACGGAGTACGACAGAACGAGCGATTCATAATCCAATC
ATCCAATCAGAGGTAAGCAGGGATGAGCCAGACAAAATAAGAATATACAC
GTAAAACAGCAGACCAGCAGACGCGGCGCATGTATGTATGTACAGCAGTG
TGCATCCGACTCACCCGACGCTCAGAAGAATACAAAAGAGGCAGGCATGA
GCAAAAAAATGAGTGCACAATTAAAAAATATGATACACCAGCTGAACATT
CTCCCCCCACAAGATATTTCATCTTCCGTATCGATTATCTTCACCTCACC
CAACGTTTGTCCATACCTCCCATCCCCCCCTTCCCCTCCAGATACA
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Coding sequence (CDS) from alignment at P-lacustris_contig1194:10678..11273+

>mRNA_P-lacustris_contig1194.1455.1 ID=mRNA_P-lacustris_contig1194.1455.1|Name=mRNA_P-lacustris_contig1194.1455.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=708bp|location=Sequence derived from alignment at P-lacustris_contig1194:10678..11273+ (Pleurocladia lacustris SAG_25_93)
ACCAGACTCCTTCTCTCCTCTCCTCTACACTATATCAGAAATATTATAAC
CCCTTCCCCCCCTCCCTTGTCGTGTCGTATTTCTCTTCCACCGTTCCACC
CTGATGGTATCCGCTCACTCTTTCCCATCGGAGACCTCTTTCCATCGGAG
ATTTCCTTCCCATCGGAAACGTTTCCAAGAAGACAAGGTTTTTGCCGTCC
CTCCCCTCTTCCCGTCCTCCTACCGATTTTTTTTTCACTCACACCAACAC
CAACACCAAGAGCACGGAGTACGACAGAACGAGCGATTCATAATCCAATC
ATCCAATCAGAGGTAAGCAGGGATGAGCCAGACAAAATAAGAATATACAC
GTAAACCAGACTCCTTCTCTCCTCTCCTCTACACTATATCAGAAATATTA
TAACCCCTTCCCCCCCTCCCTTGTCGTGTCGTATTTCTCTTCCACCGTTC
CACCCTGATGGTATCCGCTCACTCTTTCCCATCGGAGACCTCTTTCCATC
GGAGATTTCCTTCCCATCGGAAACGTTTCCAAGAAGACAAGGTTTTTGCC
GTCCCTCCCCTCTTCCCGTCCTCCTACCGATTTTTTTTTCACTCACACCA
ACACCAACACCAAGAGCACGGAGTACGACAGAACGAGCGATTCATAATCC
AATCATCCAATCAGAGGTAAGCAGGGATGAGCCAGACAAAATAAGAATAT
ACACGTAA
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