mRNA_P-lacustris_contig1191.1447.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 177 bits (449), Expect = 8.510e-49 Identity = 98/118 (83.05%), Postives = 106/118 (89.83%), Query Frame = 1
Query: 1 MVALNHS-MSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQ 351
MVAL HS SKDDQVR PTV VG TWQAIPE+ATIE RLQ +AQTGQ+ Q+RRLLYVEMLKKATA VS+GVQ VPP+TMRAIVQTFESSM+ AAMISSGQGAVLGNPQAVRQPAVRS+
Sbjct: 439 MVALVHSDASKDDQVRPPTVVVGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE) HSP 1 Score: 121 bits (304), Expect = 4.670e-30 Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 1
Query: 145 QNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYGGPASRRRAQ 411
Q+RRLLYV+M+K+ A VSAGV+ VPP+T+RAIV+TFESS++ AA ISSGQG VLGNPQAVRQPA RSQG R KSS EYGG +RRRAQ
Sbjct: 334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGARARRRAQ 422
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 4.340e-21 Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 64 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 420
G W A N TIE L + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+ +H A+ I S G + NP VR P R G R+++S E G G A R Q+YS
Sbjct: 10 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 129
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.900e-20 Identity = 65/160 (40.62%), Postives = 85/160 (53.12%), Query Frame = 1
Query: 4 VALNHSMSKDDQVRAPTVPVGST------------------WQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 420
VALNH + + +AP V G W A N TIE L + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+ +H A+ I S G + NP VR P R G R+++S E G G A R Q+YS
Sbjct: 717 VALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 874
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.440e-18 Identity = 57/145 (39.31%), Postives = 76/145 (52.41%), Query Frame = 1
Query: 4 VALNHSMSKDDQVRAPTVPVGST------------------WQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG 384
V NH + + +AP V G W A N TIE L + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+VQ F+ +H A+ I S G + NP VR P R G R+++S + G
Sbjct: 272 VTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRASRKGG 414
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 2.760e-18 Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 64 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFES-SMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 420
G W A N TIE L + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+ +H A+ I S G + NP VR P R G R+++S E G G A R Q+YS
Sbjct: 109 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 229
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.500e-18 Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 1 MVAL-NHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKAT 189
MVAL N SKDDQVR PT VG TWQAIPENATIE RLQ +AQTGQ+ Q+RRLL+VEMLKK T
Sbjct: 431 MVALVNSDASKDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1191.1447.1 >prot_P-lacustris_contig1191.1447.1 ID=prot_P-lacustris_contig1191.1447.1|Name=mRNA_P-lacustris_contig1191.1447.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=142bp MVALNHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNback to top mRNA from alignment at P-lacustris_contig1191:62113..62538+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1191.1447.1 ID=mRNA_P-lacustris_contig1191.1447.1|Name=mRNA_P-lacustris_contig1191.1447.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=426bp|location=Sequence derived from alignment at P-lacustris_contig1191:62113..62538+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1191:62113..62538+ >mRNA_P-lacustris_contig1191.1447.1 ID=mRNA_P-lacustris_contig1191.1447.1|Name=mRNA_P-lacustris_contig1191.1447.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=852bp|location=Sequence derived from alignment at P-lacustris_contig1191:62113..62538+ (Pleurocladia lacustris SAG_25_93)back to top |