mRNA_P-lacustris_contig1191.1447.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1191.1447.1
Unique NamemRNA_P-lacustris_contig1191.1447.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 8.510e-49
Identity = 98/118 (83.05%), Postives = 106/118 (89.83%), Query Frame = 1
Query:    1 MVALNHS-MSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQ 351
            MVAL HS  SKDDQVR PTV VG TWQAIPE+ATIE RLQ +AQTGQ+ Q+RRLLYVEMLKKATA VS+GVQ VPP+TMRAIVQTFESSM+ AAMISSGQGAVLGNPQAVRQPAVRS+
Sbjct:  439 MVALVHSDASKDDQVRPPTVVVGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556          
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.670e-30
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 1
Query:  145 QNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYGGPASRRRAQ 411
            Q+RRLLYV+M+K+  A VSAGV+ VPP+T+RAIV+TFESS++ AA ISSGQG VLGNPQAVRQPA RSQG R KSS EYGG  +RRRAQ
Sbjct:  334 QDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGARARRRAQ 422          
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.340e-21
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   64 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 420
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  G  + NP  VR P  R  G R+++S E G   G A R   Q+YS
Sbjct:   10 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 129          
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-20
Identity = 65/160 (40.62%), Postives = 85/160 (53.12%), Query Frame = 1
Query:    4 VALNHSMSKDDQVRAPTVPVGST------------------WQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 420
            VALNH    + + +AP V  G                    W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  G  + NP  VR P  R  G R+++S E G   G A R   Q+YS
Sbjct:  717 VALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 874          
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.440e-18
Identity = 57/145 (39.31%), Postives = 76/145 (52.41%), Query Frame = 1
Query:    4 VALNHSMSKDDQVRAPTVPVGST------------------WQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG 384
            V  NH    + + +AP V  G                    W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+VQ F+  +H A+ I S  G  + NP  VR P  R  G R+++S + G
Sbjct:  272 VTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRASRKGG 414          
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.760e-18
Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   64 GSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFES-SMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYS 420
            G  W A   N TIE  L  + +TG T Q+RR LYV+ LK+ATA VS GV+TVPPE +RA+V+ F+   +H A+ I S  G  + NP  VR P  R  G R+++S E G   G A R   Q+YS
Sbjct:  109 GVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 229          
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.500e-18
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 MVAL-NHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKKAT 189
            MVAL N   SKDDQVR PT  VG TWQAIPENATIE RLQ +AQTGQ+ Q+RRLL+VEMLKK T
Sbjct:  431 MVALVNSDASKDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT 494          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1191.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE8.510e-4983.05MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE4.670e-3073.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK5_9PHAE4.340e-2146.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG6_9PHAE3.900e-2040.63SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FLA8_ECTSI1.440e-1839.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMX3_9PHAE2.760e-1846.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE3.500e-1875.00SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1191contigP-lacustris_contig1191:62113..62538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.2901604-CDS-P-lacustris_contig1191:62112..625381622815506.2901604-CDS-P-lacustris_contig1191:62112..62538Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1191 62113..62538 +
1693493578.8026617-CDS-P-lacustris_contig1191:62112..625381693493578.8026617-CDS-P-lacustris_contig1191:62112..62538Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1191 62113..62538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1191.1447.1prot_P-lacustris_contig1191.1447.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1191 62113..62538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1191.1447.1

>prot_P-lacustris_contig1191.1447.1 ID=prot_P-lacustris_contig1191.1447.1|Name=mRNA_P-lacustris_contig1191.1447.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=142bp
MVALNHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQN
RRLLYVEMLKKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQG
AVLGNPQAVRQPAVRSQGTREKSSSEYGGPASRRRAQNYSG*
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mRNA from alignment at P-lacustris_contig1191:62113..62538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1191.1447.1 ID=mRNA_P-lacustris_contig1191.1447.1|Name=mRNA_P-lacustris_contig1191.1447.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=426bp|location=Sequence derived from alignment at P-lacustris_contig1191:62113..62538+ (Pleurocladia lacustris SAG_25_93)
ATGGTTGCGCTAAACCACAGCATGTCCAAGGACGACCAGGTACGCGCTCC CACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCACCA TAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAAC CGCCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGTGAG CGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTACAGA CTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTCGGGGCAGGGG GCTGTACTTGGCAACCCACAAGCTGTACGCCAACCAGCTGTTAGAAGTCA AGGTACTAGAGAGAAGTCGAGCTCGGAGTATGGCGGGCCGGCGTCTAGGA GACGCGCGCAGAACTACAGCGGTTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1191:62113..62538+

>mRNA_P-lacustris_contig1191.1447.1 ID=mRNA_P-lacustris_contig1191.1447.1|Name=mRNA_P-lacustris_contig1191.1447.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=852bp|location=Sequence derived from alignment at P-lacustris_contig1191:62113..62538+ (Pleurocladia lacustris SAG_25_93)
ATGGTTGCGCTAAACCACAGCATGTCCAAGGACGACCAGGTACGCGCTCC
CACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCACCA
TAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAAC
CGCCGGCTCCTTTACGTGGAGATGTTAAAGAAGGCCACCGCGACCGTGAG
CGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTACAGA
CTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTCGGGGCAGGGG
GCTGTACTTGGCAACCCACAAGCTGTACGCCAACCAGCTGTTAGAAGTCA
AGGTACTAGAGAGAAGTCGAGCTCGGAGTATGGCGGGCCGGCGTCTAGGA
GACGCGCGCAGAACTACAGCGGTTGAATGGTTGCGCTAAACCACAGCATG
TCCAAGGACGACCAGGTACGCGCTCCCACTGTCCCGGTCGGTAGCACTTG
GCAAGCAATCCCGGAGAACGCCACCATAGAGTGTAGGTTGCAGACCATGG
CGCAGACAGGGCAAACAGATCAGAACCGCCGGCTCCTTTACGTGGAGATG
TTAAAGAAGGCCACCGCGACCGTGAGCGCTGGGGTGCAGACGGTTCCTCC
TGAGACTATGCGTGCCATCGTACAGACTTTCGAAAGTAGCATGCACACCG
CGGCGATGATTTCGTCGGGGCAGGGGGCTGTACTTGGCAACCCACAAGCT
GTACGCCAACCAGCTGTTAGAAGTCAAGGTACTAGAGAGAAGTCGAGCTC
GGAGTATGGCGGGCCGGCGTCTAGGAGACGCGCGCAGAACTACAGCGGTT
GA
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