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Homology
BLAST of mRNA_P-lacustris_contig1190.1443.1 vs. uniprot
Match: A0A6H5KE32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE32_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 5.340e-14 Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2
Query: 11 TTSCLHPGCAKRPAYGVEASRKRQCCAEHALPGMVNIDLTR 133
TTSC +PGC KRP YG+EASR+R+CCA HALPGMVNIDLTR
Sbjct: 29 TTSCRYPGCPKRPTYGIEASRRRECCAVHALPGMVNIDLTR 69
BLAST of mRNA_P-lacustris_contig1190.1443.1 vs. uniprot
Match: D7FWU8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.470e-12 Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 2
Query: 20 CLHPGCAKRPAYGVEASRKRQCCAEHALPGMVNIDLTRCAR 142
CLHPGC+KRP YGVEASRKR+CC++HA P MVNIDLTRCA+
Sbjct: 56 CLHPGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRCAK 96
BLAST of mRNA_P-lacustris_contig1190.1443.1 vs. uniprot
Match: A0A6H5KMH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH1_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.660e-12 Identity = 203/508 (39.96%), Postives = 245/508 (48.23%), Query Frame = 1
Query: 178 VTGRRTFCSKHAPQGTINVERRKCAVDDCEAMPAYWHPGNRKRRCXXXXXXXXXXXXXXXXXXFKGCFTSASYGVVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQGSVRRELTTTKGSSGV------RTGAPPTATNR--GTPLP-KPFASVVSDSADVGLRSGPRLDGAQEWSTT--HAGN-DHGGNGLRCVISNCSEVSTHYFPG--------EQRLGLCARHAVAGTVEDRQQYRLPQRQRPPQIYQPQXMHXQIXXPYXXXXXXXXXXXXXQHQHQHQQWR-LH-----PQEPSQVYT-----HAMPSRVNGVRTNGSSSF-------------SAAENRPSSSEGNVNHYAFK--EDAIAGRAEAQHQAPPNNKPEQAPTRETQPAGSGEGDAAVEPAXXXXXRSAQDKESPPRAPKA---HQEEDAGAASFPLKRARMMLPWTANKDG--PPLILTTKGWTKWEWKPVLMNV 1548
VTGRRTFC KHAPQGT+N+E XXXXXXXXXXXXXXXXXX SASYGVVG+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQ S RR++ T G G R G G L +P + S S+ +G R D A +W H G+ G+G R + + ST FP E R+G H + X X XX X + QHQ Q+WR H P P ++Y A+P V GV + S S +++ PS + + + + E IA + AP +P E G+G G E A PP +P EEDAGAA+F L+R R++LPW A K+G PPL+LT KGWT+WEW+PV MN+
Sbjct: 24 VTGRRTFCGKHAPQGTVNIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASYGVVGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTNKXXXXXXXXXXXXXXXNNQSSGRRKMAPTSGVGGEGGVGIGRAGRHQQQPQHPEGVDLAGRPNSVGSSVSSGMGEWGDSRHDAAGDWPVDQHHPGSIGVAGDGPR-LRHTANRDSTRNFPAGYPFHGEKEMRVGGGPAHMMGXXXXXX-------------XXXXXXXXXXXXXXXXLQQQLDRHRLNQRRQHQQQRWRGTHEWGTLPPAPPELYRLPQLGKAVPHDV-GVPEPATPSXXXXXXXXXXXRNTSVSDDTPSLEQQHTDADSSSRLEPPIAKSEPVE--APSPERPAGQRGDEVDDKGAGAGVDGSEMAGGR---------KPPGSPAVGGTDAEEDAGAAAFVLRRPRILLPWAARKEGLPPPLLLTNKGWTEWEWQPVTMNI 505
BLAST of mRNA_P-lacustris_contig1190.1443.1 vs. uniprot
Match: A0A6H5KFP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.150e-10 Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 2
Query: 20 CLHPGCAKRPAYGVEASRKRQCCAEHALPGMVNIDLTRCAR 142
CL+ GC+KRP YGVEASRKR+CC++HA P MVNIDLTRCA+
Sbjct: 7 CLYSGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRCAK 47
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1559 |
| Cds size | 1557 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815505.968505-CDS-P-lacustris_contig1190:52033..52165 | 1622815505.968505-CDS-P-lacustris_contig1190:52033..52165 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1190 52034..52165 + |
| 1693493578.6326225-CDS-P-lacustris_contig1190:52033..52165 | 1693493578.6326225-CDS-P-lacustris_contig1190:52033..52165 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1190 52034..52165 + |
| 1622815505.9788013-CDS-P-lacustris_contig1190:53670..53846 | 1622815505.9788013-CDS-P-lacustris_contig1190:53670..53846 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1190 53671..53846 + |
| 1693493578.6458085-CDS-P-lacustris_contig1190:53670..53846 | 1693493578.6458085-CDS-P-lacustris_contig1190:53670..53846 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1190 53671..53846 + |
| 1622815505.9920797-CDS-P-lacustris_contig1190:54115..55364 | 1622815505.9920797-CDS-P-lacustris_contig1190:54115..55364 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1190 54116..55364 + |
| 1693493578.6535828-CDS-P-lacustris_contig1190:54115..55364 | 1693493578.6535828-CDS-P-lacustris_contig1190:54115..55364 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1190 54116..55364 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1190.1443.1 >prot_P-lacustris_contig1190.1443.1 ID=prot_P-lacustris_contig1190.1443.1|Name=mRNA_P-lacustris_contig1190.1443.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=519bp
PRAYNVVLAPWLREAASLRGRGEQEETVLCGARAPGDGQHRSHEVRKARL RHPSDVRRSVTGRRTFCSKHAPQGTINVERRKCAVDDCEAMPAYWHPGNR KRRCCAEHVEEGMVKLDKKLCPFKGCFTSASYGVVGEKRKFCAAHAERGM VSIGGRRCAKEDCSKRANYGVAGTNKREFCAGHAEKGMVNINNQGSVRRE LTTTKGSSGVRTGAPPTATNRGTPLPKPFASVVSDSADVGLRSGPRLDGA QEWSTTHAGNDHGGNGLRCVISNCSEVSTHYFPGEQRLGLCARHAVAGTV EDRQQYRLPQRQRPPQIYQPQQMHRQIQLPYRQQREAQLELPWRQHQHQH QQWRLHPQEPSQVYTHAMPSRVNGVRTNGSSSFSAAENRPSSSEGNVNHY AFKEDAIAGRAEAQHQAPPNNKPEQAPTRETQPAGSGEGDAAVEPAVESA VRSAQDKESPPRAPKAHQEEDAGAASFPLKRARMMLPWTANKDGPPLILT TKGWTKWEWKPVLMNVTT* back to topmRNA from alignment at P-lacustris_contig1190:52034..55364+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1190.1443.1 ID=mRNA_P-lacustris_contig1190.1443.1|Name=mRNA_P-lacustris_contig1190.1443.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3331bp|location=Sequence derived from alignment at P-lacustris_contig1190:52034..55364+ (Pleurocladia lacustris SAG_25_93) CCCCGCGCCTACAACGTCGTGCTTGCACCCTGGCTGCGCGAAGCGGCCAG
CCTACGGGGTCGAGGCGAGCAGGAAGAGACAGTGCTGTGCGGAGCACGCG
CTCCCGGGGATGGTCAACATCGATCTCACGAGGTGAGTCTTCCATGAGCG
TTTGTTGCCTTCAGTGCAATAAGTTTTAGTTTTGTTTCTTGTATGTTTTT
TTGTGTTTCCGGGAGGGTCTCGTGATCTTCGAACAGGAAACCCTGGGGGT
TGTACATTGTATGTGGATGCTGTGACCTGTTTCACAAGACTCATTTTTTC
GGAAGCAAGCGTGTGGAGTTCATCCACACATTTTGCAATACATACAAACT
CGCGCGGAGTGCCTAAAGGAAATGAAAGTGACGGCCCAAATGCTTTGGCG
AGGAAGCCCTGGCGCTAGCCTGATCCTGTGTCCATCGGCTTGCGTTTTCT
TCTACCCGTGCAAGCTGGTTCTGTTCGTGAATCTGGCCTTTTCAGCCCAG
CTTTGTTTGGGGACTACAAAGAAGGGCATTCTTGTGGTGGTTGCGATGCT
TTCACGTCTTCGATTGAGGTCATGCTGTTCCACAATTCAGGGATGGACCG
TAATGATTATCTCCAGCGGTGCAAGAAACACTAGGAGGACCGACTGTTGA
TGTGCAGCGTCAATTTGCCGATTTCCCACATATTATGGGTTCTACGCCCA
TGGAAGTGAACTGCCGACTTCCTTGGACGTAGAAACCATATGTCGGATAA
TGTGATGGGATACCCCAACAAGCTTACGTTTTGTTCGTTGATAGTGTCGC
GCTCACTCTAGCGAAGCGCCGTAAAAAACTGCGTGTGTGGGCGATCCGAA
AACCGGAGTGATTTATTCTCGCCGCTTCGTATGACTGAATAGTGAGAAGA
TGATGGCACAAAGGCCACCCCGGAAAACTCGTCGGAACAAACACACTCGA
ATTTGTTTTGGCTCTGTACGCGAACCTATTCTAACCACCCATCGGAGATT
GATGCACCGGCGGGGGCACCTGCGGGGATCACAAAGAACGAAGGCCGGAC
GTTGTTATTTTCCTGTTTGTCTCAGTCTGATTTTCATCGCGAGAAGTGTT
CCGCCATGCCTTTCCGTCGTCAGCCGTGAAGTCGAATTCCTGCATGGAGG
AGTTGATAAGCAGGGAGAGTAGGGATAAAATATATCTACTCCGGAGTATG
TTTTTTTTCTGTTCCGGAGGTCGTATCGAAGTTTCGGTTGCTTTGGACCG
GGGTCCACATTGCACTAGTGGAAACAAGCAAAGATTTTGATATTTTTGCG
TTGAAACCACGTAAGGGCTGATAGTTCAATCCCTCACACACACCCCAGCG
TCTTTGGATTGGATGCATGACATTGCATCAAACAAAATGGAATCAGGCGT
CCGTTTAGATCAGCGGCTACCACGCGGGGGGTTACATAGCGTACAAGTTT
AGGGAATAAATGTTTTCTACATAGAAAAAGTGAAAAATCGTCATTACTGG
ACGAAGCCAACATAAAGCAAGCCGACTACGTCGCTGAGGCACTCAACATT
TTTCGTCAATCCTACGCTCAAGTGTGTTTCAACGCCTCCTGCATCCATCG
TTGACGTTCTCGTGATGGCGTTTCCGGGGTTCCGAAGGTGCGCAAGGCTC
GATTGCGACACCCGAGCGACGTTCGGAGATCCGTTACCGGCCGGCGAACC
TTCTGCAGCAAGCATGCCCCGCAGGGTACGATCAACGTAGAGCGCAGGAA
ATGTGCCGTCGATGATTGCGAGGCGATGCCCGCCTACTGGCACCCGGGAA
ATCGAAAACGAAGGTGAGCGGAGGCATTCTAAGCTGTTGTAATTTCTCTA
TCCATGGAGAGCTCCGCGTGGCACACGGGGGTTGCAACCCTCCTGGAGTG
ATTGTGGCCAGATGGTGTGATTTTGTGAATGGCGGATTGTCTCAACAACC
AAGTTGACACTCGGTGGCGCAAAGGTCTCTGGCCTGTCTCGAATCCATGT
CTGGCTGGCGCAGCCGTTCCTTCCGGTTCAAGACAAGCTCGTTTCCTCAA
TTTTTTTCACCATTTGGCCCGTGTCGATGCAGGTGCTGTGCCGAGCACGT
GGAGGAAGGCATGGTCAAACTCGACAAGAAACTGTGTCCGTTCAAGGGCT
GCTTCACGTCGGCATCCTATGGCGTCGTTGGGGAGAAGAGGAAGTTCTGC
GCGGCACACGCCGAGCGAGGCATGGTGTCCATCGGGGGCAGGAGGTGCGC
GAAGGAGGACTGCAGCAAGCGCGCCAACTACGGTGTGGCGGGCACCAACA
AGCGGGAGTTCTGCGCAGGCCACGCGGAAAAAGGAATGGTGAACATTAAC
AACCAAGGAAGCGTGCGAAGGGAGCTGACGACTACCAAAGGGAGTAGCGG
CGTCCGCACAGGGGCGCCGCCAACCGCCACCAACCGGGGCACACCCCTCC
CGAAACCCTTTGCATCTGTGGTTTCAGACTCCGCAGATGTTGGTCTACGG
AGTGGGCCGCGACTCGACGGGGCTCAAGAATGGTCGACGACTCACGCAGG
CAACGACCACGGAGGCAACGGACTTCGCTGCGTCATCAGTAACTGTTCAG
AAGTCTCCACGCATTACTTTCCGGGCGAGCAGAGGCTGGGGCTCTGCGCG
CGTCACGCCGTGGCGGGGACGGTGGAGGACCGGCAACAGTATCGGCTGCC
GCAACGGCAGCGACCGCCACAGATATACCAACCGCAGCAAATGCATCGGC
AAATTCAGCTGCCGTACCGGCAGCAACGGGAAGCGCAGCTGGAACTACCG
TGGCGGCAGCACCAGCACCAGCACCAGCAGTGGCGGCTGCATCCGCAAGA
ACCCTCGCAGGTGTACACGCATGCCATGCCGAGTCGGGTCAACGGGGTAC
GAACCAACGGCAGCAGTTCGTTCTCGGCGGCCGAGAATCGCCCCAGTAGC
TCGGAAGGCAACGTCAATCATTACGCTTTCAAGGAGGACGCCATCGCCGG
TCGGGCGGAAGCCCAACACCAAGCACCACCCAACAACAAGCCGGAACAGG
CCCCAACTCGTGAGACACAGCCTGCGGGGAGCGGCGAGGGTGATGCTGCG
GTGGAACCCGCGGTAGAATCCGCGGTGAGAAGCGCTCAAGATAAGGAGTC
GCCGCCGAGGGCGCCAAAAGCACATCAAGAAGAGGATGCAGGGGCGGCAT
CCTTCCCTCTGAAACGGGCAAGGATGATGCTGCCCTGGACAGCGAACAAA
GATGGGCCTCCGCTTATTCTAACGACGAAGGGGTGGACAAAGTGGGAGTG
GAAGCCAGTCCTGATGAACGTCACGACCTAG back to topCoding sequence (CDS) from alignment at P-lacustris_contig1190:52034..55364+ >mRNA_P-lacustris_contig1190.1443.1 ID=mRNA_P-lacustris_contig1190.1443.1|Name=mRNA_P-lacustris_contig1190.1443.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3114bp|location=Sequence derived from alignment at P-lacustris_contig1190:52034..55364+ (Pleurocladia lacustris SAG_25_93) CCCCGCGCCTACAACGTCGTGCTTGCACCCTGGCTGCGCGAAGCGGCCAG CCTACGGGGTCGAGGCGAGCAGGAAGAGACAGTGCTGTGCGGAGCACGCG CTCCCGGGGATGGTCAACATCGATCTCACGAGCCCCGCGCCTACAACGTC GTGCTTGCACCCTGGCTGCGCGAAGCGGCCAGCCTACGGGGTCGAGGCGA GCAGGAAGAGACAGTGCTGTGCGGAGCACGCGCTCCCGGGGATGGTCAAC ATCGATCTCACGAGGTGCGCAAGGCTCGATTGCGACACCCGAGCGACGTT CGGAGATCCGTTACCGGCCGGCGAACCTTCTGCAGCAAGCATGCCCCGCA GGGTACGATCAACGTAGAGCGCAGGAAATGTGCCGTCGATGATTGCGAGG CGATGCCCGCCTACTGGCACCCGGGAAATCGAAAACGAAGGTGCGCAAGG CTCGATTGCGACACCCGAGCGACGTTCGGAGATCCGTTACCGGCCGGCGA ACCTTCTGCAGCAAGCATGCCCCGCAGGGTACGATCAACGTAGAGCGCAG GAAATGTGCCGTCGATGATTGCGAGGCGATGCCCGCCTACTGGCACCCGG GAAATCGAAAACGAAGGTGCTGTGCCGAGCACGTGGAGGAAGGCATGGTC AAACTCGACAAGAAACTGTGTCCGTTCAAGGGCTGCTTCACGTCGGCATC CTATGGCGTCGTTGGGGAGAAGAGGAAGTTCTGCGCGGCACACGCCGAGC GAGGCATGGTGTCCATCGGGGGCAGGAGGTGCGCGAAGGAGGACTGCAGC AAGCGCGCCAACTACGGTGTGGCGGGCACCAACAAGCGGGAGTTCTGCGC AGGCCACGCGGAAAAAGGAATGGTGAACATTAACAACCAAGGAAGCGTGC GAAGGGAGCTGACGACTACCAAAGGGAGTAGCGGCGTCCGCACAGGGGCG CCGCCAACCGCCACCAACCGGGGCACACCCCTCCCGAAACCCTTTGCATC TGTGGTTTCAGACTCCGCAGATGTTGGTCTACGGAGTGGGCCGCGACTCG ACGGGGCTCAAGAATGGTCGACGACTCACGCAGGCAACGACCACGGAGGC AACGGACTTCGCTGCGTCATCAGTAACTGTTCAGAAGTCTCCACGCATTA CTTTCCGGGCGAGCAGAGGCTGGGGCTCTGCGCGCGTCACGCCGTGGCGG GGACGGTGGAGGACCGGCAACAGTATCGGCTGCCGCAACGGCAGCGACCG CCACAGATATACCAACCGCAGCAAATGCATCGGCAAATTCAGCTGCCGTA CCGGCAGCAACGGGAAGCGCAGCTGGAACTACCGTGGCGGCAGCACCAGC ACCAGCACCAGCAGTGGCGGCTGCATCCGCAAGAACCCTCGCAGGTGTAC ACGCATGCCATGCCGAGTCGGGTCAACGGGGTACGAACCAACGGCAGCAG TTCGTTCTCGGCGGCCGAGAATCGCCCCAGTAGCTCGGAAGGCAACGTCA ATCATTACGCTTTCAAGGAGGACGCCATCGCCGGTCGGGCGGAAGCCCAA CACCAAGCACCACCCAACAACAAGCCGGAACAGGCCCCAACTCGTGAGAC ACAGCCTGCGGGGAGCGGCGAGGGTGATGCTGCGGTGGAACCCGCGGTAG AATCCGCGGTGAGAAGCGCTCAAGATAAGGAGTCGCCGCCGAGGGCGCCA AAAGCACATCAAGAAGAGGATGCAGGGGCGGCATCCTTCCCTCTGAAACG GGCAAGGATGATGCTGCCCTGGACAGCGAACAAAGATGGGCCTCCGCTTA TTCTAACGACGAAGGGGTGGACAAAGTGGGAGTGGAAGCCAGTCCTGATG AACGTCACGACCTAGGTGCTGTGCCGAGCACGTGGAGGAAGGCATGGTCA AACTCGACAAGAAACTGTGTCCGTTCAAGGGCTGCTTCACGTCGGCATCC TATGGCGTCGTTGGGGAGAAGAGGAAGTTCTGCGCGGCACACGCCGAGCG AGGCATGGTGTCCATCGGGGGCAGGAGGTGCGCGAAGGAGGACTGCAGCA AGCGCGCCAACTACGGTGTGGCGGGCACCAACAAGCGGGAGTTCTGCGCA GGCCACGCGGAAAAAGGAATGGTGAACATTAACAACCAAGGAAGCGTGCG AAGGGAGCTGACGACTACCAAAGGGAGTAGCGGCGTCCGCACAGGGGCGC CGCCAACCGCCACCAACCGGGGCACACCCCTCCCGAAACCCTTTGCATCT GTGGTTTCAGACTCCGCAGATGTTGGTCTACGGAGTGGGCCGCGACTCGA CGGGGCTCAAGAATGGTCGACGACTCACGCAGGCAACGACCACGGAGGCA ACGGACTTCGCTGCGTCATCAGTAACTGTTCAGAAGTCTCCACGCATTAC TTTCCGGGCGAGCAGAGGCTGGGGCTCTGCGCGCGTCACGCCGTGGCGGG GACGGTGGAGGACCGGCAACAGTATCGGCTGCCGCAACGGCAGCGACCGC CACAGATATACCAACCGCAGCAAATGCATCGGCAAATTCAGCTGCCGTAC CGGCAGCAACGGGAAGCGCAGCTGGAACTACCGTGGCGGCAGCACCAGCA CCAGCACCAGCAGTGGCGGCTGCATCCGCAAGAACCCTCGCAGGTGTACA CGCATGCCATGCCGAGTCGGGTCAACGGGGTACGAACCAACGGCAGCAGT TCGTTCTCGGCGGCCGAGAATCGCCCCAGTAGCTCGGAAGGCAACGTCAA TCATTACGCTTTCAAGGAGGACGCCATCGCCGGTCGGGCGGAAGCCCAAC ACCAAGCACCACCCAACAACAAGCCGGAACAGGCCCCAACTCGTGAGACA CAGCCTGCGGGGAGCGGCGAGGGTGATGCTGCGGTGGAACCCGCGGTAGA ATCCGCGGTGAGAAGCGCTCAAGATAAGGAGTCGCCGCCGAGGGCGCCAA AAGCACATCAAGAAGAGGATGCAGGGGCGGCATCCTTCCCTCTGAAACGG GCAAGGATGATGCTGCCCTGGACAGCGAACAAAGATGGGCCTCCGCTTAT TCTAACGACGAAGGGGTGGACAAAGTGGGAGTGGAAGCCAGTCCTGATGA ACGTCACGACCTAG back to top
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