mRNA_P-lacustris_contig119.1432.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig119.1432.1
Unique NamemRNA_P-lacustris_contig119.1432.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 3.350e-132
Identity = 194/252 (76.98%), Postives = 210/252 (83.33%), Query Frame = 2 
Query:  467 RGARLVGGRSALLEDLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAAS-GDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVDNG----VASAGGGGNEAAEIRKSCRGMAARLSELDPIHGRFYEFVERGGAVFGGE-VRGCTSDAD 1204
            RG  L+GGRSAL  DL LCA FLELDGRNFHCWAHRMWVAERMGLSA+EEFDFTT KIKQNFSNYSAFHFRS+VLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA++G  S  D+ERYE  LRAE ATLGELIEVE RCKWAE+ LLL SQRLANALEPRPQ     +         V +AG G  EA E+R+SCRGMAARLSELDP+HGRFYEFVE+GG V GG+ +RG   +AD
Sbjct:  147 RGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCKWAEVALLLVSQRLANALEPRPQPPRAQDXXXXXXXXXVTAAGNGSTEAGEVRESCRGMAARLSELDPMHGRFYEFVEKGGTVMGGQQMRGSAREAD 398
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.160e-52
Identity = 100/232 (43.10%), Postives = 132/232 (56.90%), Query Frame = 2 
Query:  461 RW---RGARLVGGRSALLEDLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDR-WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASGDA-ERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVDNGVASAGGGGNEAAEIRKSCRGMAARLSELDPIHGRFYE 1141
            RW   RGA  +GG +A   +L LC +FL LD RNFHCWA+R WV E+ GLSA+E+F FTT KI +NFSNYSAFH+RS++LP + E  G      L+  EL++ H A FTEP DQS WWYH FL+ WA E     +  ++Y + L+ EV  + EL+ VE RCKWA +TL      L  AL    Q                    E  E+    R +   L ++DP+H  +Y+
Sbjct:  125 RWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCKWALVTL----HHLLCALARTAQDT------------------EGVELMAEARSLVTTLVDVDPMHKSYYD 334
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: UPI000644DC6F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DC6F)

HSP 1 Score: 138 bits (348), Expect = 3.910e-34
Identity = 75/163 (46.01%), Postives = 104/163 (63.80%), Query Frame = 2 
Query:  509 DLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASGDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLA-NALEPRP 994
            +L LC+K L+LD RNFHCW++R +V E+ GL  ++E+ +TTTKI+QNFSNYSA+H RS ++P M  E     ++ L +E +L  +A+FTEP DQS W YH +L+   +  A  G    Y++   AEV  + ELIE+E  CKW   TLL     L  +A E RP
Sbjct:  128 ELKLCSKLLDLDLRNFHCWSYRRFVGEKSGLPLEKEYAYTTTKIEQNFSNYSAWHQRSALIPLMNTEP-QQLFEKLKEEFELVRNAVFTEPKDQSSWIYHKWLVGTMK--AIPGCD--YKEVFNAEVEAINELIEIEPDCKWPIYTLLTLKLDLGCDATELRP 285
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: H3GF34_PHYRM (Geranylgeranyl transferase type-2 subunit alpha n=6 Tax=Phytophthora TaxID=4783 RepID=H3GF34_PHYRM)

HSP 1 Score: 135 bits (341), Expect = 4.740e-33
Identity = 81/220 (36.82%), Postives = 116/220 (52.73%), Query Frame = 2 
Query:  488 GRSALLEDLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEE--GAASGDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVDNGVASAGGGGNEAAEIRKSCRGMAARLSELDPIHGRFYE 1141
            G + L +++ LC K LELD RNFHCW +R  V +  G++ +++  FTT KI+QNFSNYSA H RS  LP  +         +L DE+ L   A+FTEP DQS W+Y+ +LLT   E   +++GDA     FL+++V  LGEL+E+E   KW  +T+     RL    E       + ++V+                      +  R   LDP H R+YE
Sbjct:  125 GLADLKKEIGLCDKLLELDERNFHCWNYRRHVCKLAGVAEEDQLAFTTQKIEQNFSNYSALHHRSITLPEPLTA------DVLFDEIGLVQQAVFTEPDDQSAWFYYRWLLTSMVELVESSAGDAVG---FLKSQVQWLGELLEMETEAKWVVVTVADLHSRLGAITEVHGWEESKKQSVE----------------------LYERAIALDPDHRRYYE 313
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: A0A8K1CD87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD87_PYTOL)

HSP 1 Score: 135 bits (339), Expect = 1.040e-32
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 2 
Query:  500 LLEDLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASGDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVDNGVASAGGGGNEAAEIRKSCRGMAARLSELDPIHGRFY-EFVER 1153
            L +++ LC + L+LD RNFHCW +R  V +  G+S ++E  F T KI+QNFSNYSA H RS  LP+ +        ++L DE+ +   A+FTEP DQS W+Y+ +L+T   +   S  +E  E FL +++  L EL+E+E   KW  +TL    +RL+        A  EDE               A++ ++  R    +L  +DP H ++Y + ++R
Sbjct:  134 LKKEIALCNRLLDLDERNFHCWNYRRHVCQLAGVSREDELAFATLKIEQNFSNYSALHHRSITLPKPLTR------EILHDEIGIVQQAVFTEPDDQSAWFYYRWLVTSMLDVVQSEPSEAVE-FLDSQIQWLLELLEMESEAKWVLVTLADLQRRLS-------VAQTEDEA-------------SASQAKEQSRVYYKQLLSVDPDHAQYYRDMIQR 325
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: F0W4K2_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4K2_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.150e-32
Identity = 73/217 (33.64%), Postives = 117/217 (53.92%), Query Frame = 2 
Query:  506 EDLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA---EEGAASGDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVDNGVASAGGGGNEAAEIRKSCRGMAARLSE-LDPIHGRFYEF 1144
            +++ LC K L+LD RNFHCW +R +VA+++G+ A+EE  F+T KI+QNFSNYSA H RS  LP  + +       ++ +E++L   A+FTEP DQSVW+Y+ +L+  A   E      ++ +   F+ +++  + EL  +E   KW  +TL     RL                           G++  E R+ CR +  +LS+ +D  H  +YE+
Sbjct:  133 KEILLCEKLLDLDERNFHCWNYRRYVAKKLGMGAEEELQFSTIKIEQNFSNYSALHHRSISLPVPLTK------DIILEEINLVQQAVFTEPDDQSVWFYYRWLIQNAVDLENNETVSESCQLHSFIHSQITWVRELYVMEASAKWVIVTLADLYGRLCIYTT---------------------NGDDIQETREKCRALYRKLSDHIDQDHKHYYEY 322
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: D0N0T5_PHYIT (Geranylgeranyl transferase type-2 subunit alpha n=15 Tax=Phytophthora TaxID=4783 RepID=D0N0T5_PHYIT)

HSP 1 Score: 133 bits (335), Expect = 4.330e-32
Identity = 85/222 (38.29%), Postives = 113/222 (50.90%), Query Frame = 2 
Query:  488 GRSALLEDLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASGDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVDNGVASAGGGGNEAAEIRKSCRGMAARLSELDPIHGRFYEFVER 1153
            G   L  ++ LC K L LD RNFHCW +R  V +  G+S  E+  FTT KI+QNFSNYSA H RS  LP  +         +L DE+ L   A+FTEP DQS W+Y+ +LLT   E   S  AE    FL+++V  L EL+E+E   KW  +TL     RL+                   V +   G  EA   +K   G+  R   LDP H  +YE +++
Sbjct:  136 GLGDLKMEIGLCDKLLNLDERNFHCWNYRRHVCKLAGVSKAEQLAFTTQKIEQNFSNYSALHHRSITLPEPLSA------DVLFDEIGLVQQAVFTEPDDQSAWFYYRWLLTSMVELVESS-AEDASGFLKSQVQWLNELLEMESEAKWVVVTLADLQFRLS-------------------VITDVSGWEEA---KKRSVGLYDRAIALDPDHRHYYEDMKK 328
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA)

HSP 1 Score: 133 bits (334), Expect = 1.140e-31
Identity = 66/147 (44.90%), Postives = 92/147 (62.59%), Query Frame = 2 
Query:  509 DLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDR----WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASG-DAERYEKFLRAEVATLGELIEVEGRCKW 934
            +L L AK L LD RNFHCW +R  V    G++A+ E  FTTTKI+ NFSNYSA+H+RS++LP +   AG +       +L +EL+L  +A FT P D S W+YH +L+     GAA+      +E  +RAE+  + EL+E+E  CKW
Sbjct:  127 ELKLTAKLLALDDRNFHCWTYRRNVVRVAGVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECKW 273
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: M4C4N4_HYAAE (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4N4_HYAAE)

HSP 1 Score: 131 bits (329), Expect = 1.780e-31
Identity = 80/218 (36.70%), Postives = 110/218 (50.46%), Query Frame = 2 
Query:  488 GRSALLEDLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASGDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVDNGVASAGGGGNEAAEIRKSCRGMAARLSELDPIHGRFYE 1141
            G   L +++ LC K L+LD RNFHCW +R  V E  G+S  ++  FTT KI+QNFSNYSA H RS VLP  +         +LS E++L   A+FTEP DQS W+Y+ +LLT +         E    FL+ +V  L +L+E+E   KW  +TL     R+               +VD    S           +K    +  R  +LDP H R+YE
Sbjct:  110 GLGDLKKEIGLCDKLLDLDERNFHCWNYRRHVCEMAGVSKTDQLAFTTKKIEQNFSNYSALHHRSTVLPEPITV------DVLSSEIELVQQAVFTEPDDQSAWFYYRWLLT-SMLDLMESSPEDAAGFLKTQVQWLEQLLEMEKDAKWVVVTLADVRGRVGAMT-----------SVDGWQDS-----------KKQSAELYERAIKLDPSHRRYYE 298
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BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Match: A0A7S0JGG3_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JGG3_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 3.420e-31
Identity = 68/165 (41.21%), Postives = 98/165 (59.39%), Query Frame = 2 
Query:  509 DLTLCAKFLELDGRNFHCWAHRMWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEA---GHDRWQ-LLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASGDAERYEKFLRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPR 991
            DL L AK L LD RNFHCW +R +V  +  +   +E  FT  KI  NFSNYSA+H+RS++LP++ + A     DR++ +L +EL L  +A FT P DQS W+YH +LL   EE   +      E  L+ E+  L EL+E+E  CKW   T+   +++L+   + R
Sbjct:   72 DLKLTAKMLALDDRNFHCWTYRRFVVRQASVPLTDELAFTMGKINANFSNYSAWHYRSKLLPQLYKPATDTDQDRFECVLREELALLRNAFFTAPEDQSAWFYHRWLLAQLEERLGTATTAMLET-LQEELNMLNELLELEPDCKWPLATVSFIAKKLSLPADTR 235
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig119.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK31_ECTSI3.350e-13276.98Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A835Z1Z5_9STRA2.160e-5243.10Geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI000644DC6F3.910e-3446.01hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
H3GF34_PHYRM4.740e-3336.82Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A8K1CD87_PYTOL1.040e-3235.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0W4K2_9STRA4.150e-3233.64Geranylgeranyl transferase type-2 subunit alpha n=... [more]
D0N0T5_PHYIT4.330e-3238.29Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A0M0JE27_9EUKA1.140e-3144.90Geranylgeranyl transferase type-2 subunit alpha n=... [more]
M4C4N4_HYAAE1.780e-3136.70Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7S0JGG3_9EUKA3.420e-3141.21Geranylgeranyl transferase type-2 subunit alpha n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig119contigP-lacustris_contig119:142512..149046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.4
Seed ortholog evalue1.6e-88
Seed eggNOG ortholog2880.D8LK31
Preferred nameRABGGTA
KEGG koko:K14050,ko:K20306
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
EC2.5.1.60
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko04131
Exons7
Model size1219
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig119.1432.1prot_P-lacustris_contig119.1432.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig119 146498..149046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.7240498-UTR-P-lacustris_contig119:142511..1426191622815504.7240498-UTR-P-lacustris_contig119:142511..142619Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 142512..142619 +
1693493577.72515-UTR-P-lacustris_contig119:142511..1426191693493577.72515-UTR-P-lacustris_contig119:142511..142619Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 142512..142619 +
1622815504.7363946-UTR-P-lacustris_contig119:145112..1452501622815504.7363946-UTR-P-lacustris_contig119:145112..145250Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 145113..145250 +
1693493577.7451413-UTR-P-lacustris_contig119:145112..1452501693493577.7451413-UTR-P-lacustris_contig119:145112..145250Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 145113..145250 +
1622815504.7458935-UTR-P-lacustris_contig119:145731..1459771622815504.7458935-UTR-P-lacustris_contig119:145731..145977Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 145732..145977 +
1693493577.7539-UTR-P-lacustris_contig119:145731..1459771693493577.7539-UTR-P-lacustris_contig119:145731..145977Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 145732..145977 +
1622815504.7572465-UTR-P-lacustris_contig119:146415..1464971622815504.7572465-UTR-P-lacustris_contig119:146415..146497Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 146416..146497 +
1693493577.7635028-UTR-P-lacustris_contig119:146415..1464971693493577.7635028-UTR-P-lacustris_contig119:146415..146497Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig119 146416..146497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.7665198-CDS-P-lacustris_contig119:146497..1465691622815504.7665198-CDS-P-lacustris_contig119:146497..146569Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 146498..146569 +
1693493577.773066-CDS-P-lacustris_contig119:146497..1465691693493577.773066-CDS-P-lacustris_contig119:146497..146569Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 146498..146569 +
1622815504.7757647-CDS-P-lacustris_contig119:146807..1469241622815504.7757647-CDS-P-lacustris_contig119:146807..146924Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 146808..146924 +
1693493577.7832644-CDS-P-lacustris_contig119:146807..1469241693493577.7832644-CDS-P-lacustris_contig119:146807..146924Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 146808..146924 +
1622815504.7847133-CDS-P-lacustris_contig119:148220..1483881622815504.7847133-CDS-P-lacustris_contig119:148220..148388Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 148221..148388 +
1693493577.7938457-CDS-P-lacustris_contig119:148220..1483881693493577.7938457-CDS-P-lacustris_contig119:148220..148388Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 148221..148388 +
1622815504.7950995-CDS-P-lacustris_contig119:148758..1490461622815504.7950995-CDS-P-lacustris_contig119:148758..149046Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 148759..149046 +
1693493577.8027985-CDS-P-lacustris_contig119:148758..1490461693493577.8027985-CDS-P-lacustris_contig119:148758..149046Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig119 148759..149046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig119.1432.1

>prot_P-lacustris_contig119.1432.1 ID=prot_P-lacustris_contig119.1432.1|Name=mRNA_P-lacustris_contig119.1432.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=215bp
MWVAERMGLSAQEEFDFTTTKIKQNFSNYSAFHFRSRVLPRMVEEAGHDR
WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGAASGDAERYEKF
LRAEVATLGELIEVEGRCKWAEITLLLTSQRLANALEPRPQAAPEDETVD
NGVASAGGGGNEAAEIRKSCRGMAARLSELDPIHGRFYEFVERGGAVFGG
EVRGCTSDADTGYK*
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mRNA from alignment at P-lacustris_contig119:142512..149046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig119.1432.1 ID=mRNA_P-lacustris_contig119.1432.1|Name=mRNA_P-lacustris_contig119.1432.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6535bp|location=Sequence derived from alignment at P-lacustris_contig119:142512..149046+ (Pleurocladia lacustris SAG_25_93)
ATGCACGGCAGGAAAAAGAGCGACTTACCGCAAACAAAGGAGGAGAAGGA
TGCAGTGCAAGCAAAAATCTCCAACTACAAGAAGGCGAGACAGAGAGAAC
AGCTATTTGTTGTTTGTTCAAACAATGTCCAACAGCTAGGATTGCCTCTG
TCGTTCCCGTACGAGCTTGATGAAAGTATCCGTAGGCGGCTCTTCCATGA
CCTCCTGCTGTTCTCATTTTCTATGCATAGTTCGAACCATATTTTCATTG
CTCGCAAAAATCAACGAGGTACTTGTTTCTACACAGCGACGGTGCGGTGT
TGATGGTAGGAGCGAGTCTCTCCGCGCTAGTCGCTCGTGGCCCTACTTTA
GGACACTGCCGTAGGATGGTGGCTGCGTATAACGACCTACACTGGGCATA
CAGGATACAGCCCAACAGGTATACATCCAATGATTGTCTCACTGCGTCTA
CTGAGGTGGACATTAGACACACCCGTGATGATATTGATACTGAGTATTTG
GAGTTTGAAAACTCATCGGGTGTGTGTGCTATTCTGGAAGGGGTGTGATA
TCTTACGTCACCGTGCGAACTTGATTTGAGAGTCCCTTGTTTTTTTTGGT
TCAAGAAAACTATAGCACGGTGTGCTTTTCTGGAGCATTCTTTGGGGATG
TGCTATCTTATGTATCTACGGTTGTGTCTTGTGGTCTGTCTGTCTGTCTT
GCCAGTTTTTCATGCTTACCACCGGCTACCATCGGCGCGCCTGCAAGAGT
TGGACTATTTCAAATCACGCAGATGACAGACACTCTTCGTGCGCGTGATT
GCGTGATTTCAGCATCACGAGCAATCGCATAATTTCATCTCGCTGGCAAG
GTGGCACGAACATGTTGTAGCTTTTTCCATATGTTGTCAACCAACCGCTA
CACAGCGGAGTACGTTTTGCACCCACTCAAAATAATCCCTACAGCGCGGC
AACAAACACGGACATCTGCCATATCCCAGGCTGTCACATATGCACAGGGT
AACGGCGGTGCTGTCATCTGGGCTAAGTCAAAGTGTTGCGTGCACATTTG
CGCAGTGGCGGATAGGCCGCGGCAGCAGATCTGTTAAGGCCGCACCGCGC
CCAGCGGAATAGACCGCCAGTTTCCTCAACCTGTTGCGTTCCTTTTCGTG
TGTCGTTTCGTAATTTTCACGCGAATAAAAAGCTTTTATTAATTATTGTC
ACAGAAGCAGATCATTATCATCTCTATAGAATTACACGAATAACACAAAA
ATATCGTCCGATTGCAAGTCGGTTAAACGCGACACAGCCACCGATCAAGC
AGCACATGATACAACGCAGGCTGCTGCTGTGATCCTCGTCATGGCCGGCG
ACAACACTCCCCCGTGTGAAAAATTCGTACAAAACATGGAATTTCTGGGT
CGCTTTGAGGTACACGGCACCTAGCAAAGTATGTGTGCCCTTTCTTTGTT
GACGATTGCTTAGTGCTTTATTCCGTTCCCATTGGTTGCAGCTACCTTCT
ACACCCAAGACTTCGGCCGCAACGCCTGAAACCACCGCGCGCAGCAGCTT
CCAAATACGGTTGCAGACAACGGAGTGCAGAGATTTGCCATGCGTTTTTG
GTATAGACACCACCACCAAAAAATCGACTAGACCTGCTGTGCTGCGCTTG
GACGACCGGTTTCACCGTGGTACGACAGCCATACACCACAGCAACGACAC
TGTCAACCCTCGTGTCTCTAGGGCGATTCTTACGGGCTGTTGGGGCTCGT
AAGTGTGGTTCGGGGCAATGTCACTGAAGGCATACATACTACGTTCCTGA
GCGTCGAAGACGTGTGTTGTTGCCCAGCCTCCAGCTGTACGTGACCAATT
GAGAAATGGCAGGCAACGAAATGCTTCCAGACCGCCTGCCGGTGCCTATG
AAACCTTAGGCATAACCCAACGCTCTCTTCGAAGGCACGAACTCCGAAAT
GGCCTCGATCCGACAGCACAAATAGCAAAAAACAGTGAAACTGCCATTTT
TTTTCTGTAGGAAAAAGGGGGGGGGGATCCGGGGACACGAAGAGCGCGGT
GCGGCTTTAAGACTTCTGACGGCCCCTACTGCTGCTGGTAGGCTTACCAG
GGCCACCAGCCATTGGTGAAAAACCTAGCATTATTTAGCATTCGCATTAC
GTGAAATACTCTGGTGACGTGTACCGACAAGGTAGTGTCTGACTCATATT
TCTCCTGTGGTCCTCCCTCATCAGGGGCAACAAACAGCAACAGAACGCCG
ACGACATCTGGCGCGGCTGTCGTTGTATCTCGTTCGAGACGGACACCGCA
TAGTTAGTTCCCGTTGCCTTCTTGACACCTCCGTTCGGGTGGATCAAAAC
CTAGGATCAAGTTGCTTGTTGACGCGTAGAGGAGGCCCCTCTTTCAGCAC
CCCCGCCCCTTCAGGCTCTACCGGTATTTCAAACTCCGCGGCATTAGCCT
ATTTTTATTAACACAAACTCAACAAGCACCTGAAATTTCGGACGAACTTG
TCCTTGGCACGCACAAAAAGAAAAGACAAGTCAGGTTTGTTGCCAATCAA
ATTACGTACATGCATAGCTTTTCCCAACCCCGTTTGTTTCGGCTGCGACA
GGTAGTCGGCGCCGTCCGCCACAAGCGGGCGAATGGCCAAATGGACCGGG
AGTACAAAAACCTCCTGGGGAAGCTGCTGAGGCTGCACCCAGACTACTAC
TCGATGTGGAACTTCCGCAAGGAGGTCGTCCTGGCTGAGGTGAGAACGAT
ACGGTGAATAGAGCTAGGAAGGGAGGAGGGGGAGACGTGAAGGACGCGGT
GTAGGGATATAGACAGCACACGCGGCCAGAGAGGCCAAGGGGCGTAGATA
GTACAGAGGGAAATGTATTTTTAGAGGTATGGAGAGGGGAGGGAGGAAAT
GAGAGAAGGAGACAGGGACAGAGACGCACATAGGCATAGAGATAGACGGC
GACGCATTTATGGTCACCAAAGAGTCATCCAAGAGCGATCTAGGTGTGTT
GGTGGTACCCTCAGCCTATTTTGTCCTTCGTTCTGCCTACCCCCCTATCC
CCTTATCGTGAAGCTGGCTGCCTGGCGACCAACCGCTGTGTCCTTGTTTT
GGACTCACCCTGCCTGTCAGCGTCAACGGTCCTGTCAACATATGATCCCC
TCTGTTTCCTCCCAATCTCGCAACGACTACAACACGGCGCGCGACGTTCC
ACGACACGACCCGTGCATAGCTTTCTCGAATACAAGACGGTAACAGCTGC
CAAGAGGGTAGCAAGAGAATGGATATGGCGACGGTGGGAGAAGGAACTAG
CAGCTCCTTGTCGACATCGCCGCAGGAGAAAGAAGCACTGCTGCGGGGCG
TTTACCAAGAGGAGCTCGTGCTCAGCGTGGACTGCATCAAGCGCAATCCC
AAGTCGTACCCGGCGTGGCACCACCATAAATGGGCGTTGGAGAGGGGCTA
GACTTGTTGGGGGGAGGTGAGGGCAAGATATCCGTAGGGCATCGGAGTTG
CAGAGCTCTATTTCTTGCTTGGGACGAGTCGCCAGGCGGGATGGTCCAAC
GAGTACGGAACGATGCAGCTCCAATTTTTAGCAAAGGCGAATGCTACGGC
TTTGTCACCTCTGGCACAGGCTGGCCACCGTTGTATAGTCAATCTCAGTC
CGGCGCTTGTTTCCTTATCTCACCTTCGACGCCCTCTCCCTCTGCCTTTT
TTGCTTATTCATCGCCTGTTTTTTGGAACCCCGCGTGTCGCGCCACCCCC
CATGACGTGCTCCTATCCCCTCTCTTCATGGCTTCTCTCTTTTGAGTTTT
TCCCCCTCGCTCCCCGGCATGGTTCATGGCAAATGACTAAGCAACAAACA
TCTCCTTCCACCCCCTTCTCCTGGCCAAATTAACTTGTAACTCTTGTCTG
CAAGGTCAGCGCTTTTGGAGGATTTGACTCTGTGCGCCAAGTTTTTGGAG
CTAGACGGCAGAAATTTCCACTGCTGGGCGCATCGCATGTGGGTGGCAGA
GCGGATGGGCCTCTCTGCCCAGGAAGAGTTTGACTTCACCACCACCAAAA
TCAAGCAGGTGAAGAGGCGGGTCCATTTCTTTTCATTGGTTTATGGCACC
ATTTCCACGACGCTCACCGTTTCCCAAACCACGCCGAGATCGGCGCAGAA
TATCGTAGTATAGCTGTTCGGGAGCCAGCGACCAAATACCGTCCGATTGA
CCCCGTTGTAACGGTATCGCTTGGTGTACCACTGACTTTTTTGTCTTGTT
GATCGCGGATACCTTTCCCACCGCTCCCCCGCCCACCTCCTAACAGAACT
TCAGCAACTACAGCGCGTTTCACTTCCGGAGCAGAGTTTTGCCGAGGATG
GTGGAGGAGGCCGGCCACGACCGGTGGCAGCTGCTGTCCGACGAGCTAGA
TCTCACGCACGACGTGAGTGGCTTGTTGTGTCGCCGCGTGATGTGATGGC
GTCATGACCCTGTGCGGAACGGACGGACGTGGAACGTGTCTAACGTGGCG
TACCTTGCATTCGTCGTGGCGTGTACGTGCATAAGCGCGGGTGTGGTGCA
CGTCTCGTGTGTGTGTTTGTTTGTGTGCCTCGTTTATTAGCAACGACCGC
GCTAACCGGCGCGGGCGGACCAATGAAATACGCCAGCCTTATGACAGTCG
AACGCAATCTAAACTGCCGGCTCCCCCGAAGTGTTGAGCGAGGACGATCC
AGCCTCCGGATCGAAAGAACGTGTATGCGAGGACACCACAACGCCACTTT
TGACTACCAAGGATTCCTCCTTTTCCTACTCCTCATGACAATGCCTGGAC
CACTTTAATGCCTGGACCACTTAAAATTTCAAATTTATGTATAGAATTAA
ATTTGAAAAGTTTATTCCAAAATCTTCTTAGAAAATGGTCCAGGCATTAA
AGTGGTCCAGGCATTAAAGTGGTCCAGGCATTGTCATGAGGAGTAGGAAA
AGGAGGAATCCTTGGTAGTTTAAAAGTGGCGTTGTGGTGTCCTCGCATAC
ACGTTCTTTCGATCCGGAGGCTGGATCGTCCTCGCTCAACACTTCGGGGA
GCCCGCAGTTTAGATTGCGTTCGACTGTCATAAGGCTGGCGTATTTCATT
GGTCCGCCCGTGCTGGTTAGCGCGGTCGTTGCTAATAAACGAGACACACA
AACAAAACCTGTAGCTGTCTGTTCTACCTCCTAGAATACTTTTCCTCGCC
ACGTTGTGCTCGTTCCTAGTTCCAGTTAGTTGGTCTCTGAGAGTTTTCTT
GGACCTATTTCCACTGCTAGCGTTTCTACTGCTATGAAACCTTGTTCTCC
ATGCTGGTGGCGGTTCTGCGGCAGATTCAAATGATCGAAGCTCTTAGTCT
CTTCTACTCCACCATCCACGCCCTCGTGTCTTTTTTTCTCCTCCAGAAGA
GTCGCCTTCATCCTTTTTTCTCGAGTTCCTTCTTCTACACCTTTCTGCGT
GTGTGTGTGTGGGGGTTCTTGTCGGTAGCATCGATGGCGCTAACCGGCTG
ACCAATGGAAATACGTGAATCTGCAGCCGGAAGGGACGTAGAGCGCTTTC
TCTATCGCAGGCTCCCCTCACGGGCGTCGCGAGGGAGGGAGACCGGTCAA
GCCTGTTAAGATTCGTGTTTTGGGGCAGTGTTGCTTTTAGGTCGACCGAT
CCCGTGTGCTGAAGGAACCTCACGTTCTCGGTTGAATCCCCGTATTGCCT
ACCAAACAGGCGATGTTCACCGAGCCCGCAGACCAGAGCGTATGGTGGTA
CCACCACTTCCTTCTCACGTGGGCGGAGGAGGGCGCCGCCAGCGGCGACG
CAGAACGTTACGAGAAATTTCTTCGTGCGGAGGTGGCCACCCTGGGGGAG
CTGATCGAGGTGGAGGGTCGATGCAAGGTATGTCTCTCCGTGCCGTCGAC
ACACTTACCACCACCACCGTGGGTGGCATTTACCCTTTGTTCGTACCGTA
TTTTATGGACCTCGGCGGCCCGCGGATCGCTGAGATCGCAGGTGTGAGGG
AGGGCGCAGCTGTCGGTGTGCCTGAATTGTGGGCGAATGTGTGGTTCGCC
ACTCTGAACTAGCTGTACGTTGATGAAAGTGCCTCTGTGTCCCCTGTCCC
CTGTATTTTTTTTCGACACTCGCCAACTCTCTTCTGCGCGTGTGTCTGTC
TCTATTTCCCACCCTGTCGGTTTCACCCTTCAATTTTGCGTGTCCTGATT
TATCACGGCTCTCGCTGCTGCGCTCTTAACGTAACGCGCACGACCAGTGG
GCCGAGATCACGCTTCTCCTGACCTCCCAACGGCTCGCCAACGCCCTCGA
ACCACGTCCGCAAGCTGCTCCCGAGGACGAGACTGTTGACAATGGGGTAG
CTTCGGCTGGGGGTGGCGGCAACGAAGCCGCCGAGATCCGAAAGAGCTGC
CGCGGCATGGCGGCACGTCTGTCGGAGTTGGACCCGATACACGGCCGCTT
CTACGAATTCGTGGAGAGGGGTGGGGCTGTGTTTGGGGGAGAGGTGCGAG
GCTGCACCAGCGACGCAGATACGGGATACAAGTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig119:142512..149046+

>mRNA_P-lacustris_contig119.1432.1 ID=mRNA_P-lacustris_contig119.1432.1|Name=mRNA_P-lacustris_contig119.1432.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1290bp|location=Sequence derived from alignment at P-lacustris_contig119:142512..149046+ (Pleurocladia lacustris SAG_25_93)
ATGTGGGTGGCAGAGCGGATGGGCCTCTCTGCCCAGGAAGAGTTTGACTT
CACCACCACCAAAATCAAGCAGATGTGGGTGGCAGAGCGGATGGGCCTCT
CTGCCCAGGAAGAGTTTGACTTCACCACCACCAAAATCAAGCAGAACTTC
AGCAACTACAGCGCGTTTCACTTCCGGAGCAGAGTTTTGCCGAGGATGGT
GGAGGAGGCCGGCCACGACCGGTGGCAGCTGCTGTCCGACGAGCTAGATC
TCACGCACGACAACTTCAGCAACTACAGCGCGTTTCACTTCCGGAGCAGA
GTTTTGCCGAGGATGGTGGAGGAGGCCGGCCACGACCGGTGGCAGCTGCT
GTCCGACGAGCTAGATCTCACGCACGACGCGATGTTCACCGAGCCCGCAG
ACCAGAGCGTATGGTGGTACCACCACTTCCTTCTCACGTGGGCGGAGGAG
GGCGCCGCCAGCGGCGACGCAGAACGTTACGAGAAATTTCTTCGTGCGGA
GGTGGCCACCCTGGGGGAGCTGATCGAGGTGGAGGGTCGATGCAAGGCGA
TGTTCACCGAGCCCGCAGACCAGAGCGTATGGTGGTACCACCACTTCCTT
CTCACGTGGGCGGAGGAGGGCGCCGCCAGCGGCGACGCAGAACGTTACGA
GAAATTTCTTCGTGCGGAGGTGGCCACCCTGGGGGAGCTGATCGAGGTGG
AGGGTCGATGCAAGTGGGCCGAGATCACGCTTCTCCTGACCTCCCAACGG
CTCGCCAACGCCCTCGAACCACGTCCGCAAGCTGCTCCCGAGGACGAGAC
TGTTGACAATGGGGTAGCTTCGGCTGGGGGTGGCGGCAACGAAGCCGCCG
AGATCCGAAAGAGCTGCCGCGGCATGGCGGCACGTCTGTCGGAGTTGGAC
CCGATACACGGCCGCTTCTACGAATTCGTGGAGAGGGGTGGGGCTGTGTT
TGGGGGAGAGGTGCGAGGCTGCACCAGCGACGCAGATACGGGATACAAGT
AGTGGGCCGAGATCACGCTTCTCCTGACCTCCCAACGGCTCGCCAACGCC
CTCGAACCACGTCCGCAAGCTGCTCCCGAGGACGAGACTGTTGACAATGG
GGTAGCTTCGGCTGGGGGTGGCGGCAACGAAGCCGCCGAGATCCGAAAGA
GCTGCCGCGGCATGGCGGCACGTCTGTCGGAGTTGGACCCGATACACGGC
CGCTTCTACGAATTCGTGGAGAGGGGTGGGGCTGTGTTTGGGGGAGAGGT
GCGAGGCTGCACCAGCGACGCAGATACGGGATACAAGTAG
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