mRNA_P-lacustris_contig1186.1409.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1186.1409.1
Unique NamemRNA_P-lacustris_contig1186.1409.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1186.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1186contigP-lacustris_contig1186:26045..26425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.3891335-CDS-P-lacustris_contig1186:26044..264251622815501.3891335-CDS-P-lacustris_contig1186:26044..26425Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1186 26045..26425 +
1693493575.8063602-CDS-P-lacustris_contig1186:26044..264251693493575.8063602-CDS-P-lacustris_contig1186:26044..26425Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1186 26045..26425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1186.1409.1prot_P-lacustris_contig1186.1409.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1186 26045..26425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1186.1409.1

>prot_P-lacustris_contig1186.1409.1 ID=prot_P-lacustris_contig1186.1409.1|Name=mRNA_P-lacustris_contig1186.1409.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=127bp
GTQRNSCLCPAAFVYCSLFCWQLAVCVKGYTQTAANSLSNSQDKMFKCVY
FDCMFRQTRDSCWSRCRVCVSEAIAIFVVGAISTEMTWLLFCKENMYVGL
SVQHGVPHIFPVLHPSTSSPEGISFW*
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mRNA from alignment at P-lacustris_contig1186:26045..26425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1186.1409.1 ID=mRNA_P-lacustris_contig1186.1409.1|Name=mRNA_P-lacustris_contig1186.1409.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=381bp|location=Sequence derived from alignment at P-lacustris_contig1186:26045..26425+ (Pleurocladia lacustris SAG_25_93)
GGCACGCAACGCAACAGCTGTTTGTGTCCAGCAGCATTTGTTTATTGTAG
TTTGTTTTGCTGGCAACTTGCTGTTTGTGTTAAAGGATACACGCAAACAG
CAGCGAACAGCCTCTCGAACAGCCAAGACAAAATGTTTAAATGTGTTTAC
TTTGATTGTATGTTTCGCCAGACCAGAGACTCCTGTTGGTCACGATGTAG
AGTATGCGTAAGTGAAGCCATTGCAATATTTGTCGTAGGTGCCATATCCA
CCGAGATGACATGGCTTTTGTTTTGTAAGGAAAATATGTATGTTGGGCTG
AGCGTTCAGCATGGGGTCCCTCATATTTTTCCCGTTCTCCATCCCTCAAC
CTCTTCTCCCGAAGGCATTTCATTTTGGTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1186:26045..26425+

>mRNA_P-lacustris_contig1186.1409.1 ID=mRNA_P-lacustris_contig1186.1409.1|Name=mRNA_P-lacustris_contig1186.1409.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=762bp|location=Sequence derived from alignment at P-lacustris_contig1186:26045..26425+ (Pleurocladia lacustris SAG_25_93)
GGCACGCAACGCAACAGCTGTTTGTGTCCAGCAGCATTTGTTTATTGTAG
TTTGTTTTGCTGGCAACTTGCTGTTTGTGTTAAAGGATACACGCAAACAG
CAGCGAACAGCCTCTCGAACAGCCAAGACAAAATGTTTAAATGTGTTTAC
TTTGATTGTATGTTTCGCCAGACCAGAGACTCCTGTTGGTCACGATGTAG
AGTATGCGTAAGTGAAGCCATTGCAATATTTGTCGTAGGTGCCATATCCA
CCGAGATGACATGGCTTTTGTTTTGTAAGGAAAATATGTATGTTGGGCTG
AGCGTTCAGCATGGGGTCCCTCATATTTTTCCCGTTCTCCATCCCTCAAC
CTCTTCTCCCGAAGGCATTTCATTTTGGTAGGGCACGCAACGCAACAGCT
GTTTGTGTCCAGCAGCATTTGTTTATTGTAGTTTGTTTTGCTGGCAACTT
GCTGTTTGTGTTAAAGGATACACGCAAACAGCAGCGAACAGCCTCTCGAA
CAGCCAAGACAAAATGTTTAAATGTGTTTACTTTGATTGTATGTTTCGCC
AGACCAGAGACTCCTGTTGGTCACGATGTAGAGTATGCGTAAGTGAAGCC
ATTGCAATATTTGTCGTAGGTGCCATATCCACCGAGATGACATGGCTTTT
GTTTTGTAAGGAAAATATGTATGTTGGGCTGAGCGTTCAGCATGGGGTCC
CTCATATTTTTCCCGTTCTCCATCCCTCAACCTCTTCTCCCGAAGGCATT
TCATTTTGGTAG
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